data_48N
# 
_chem_comp.id                                    48N 
_chem_comp.name                                  "(2E)-2-[(2S,4R)-5-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-4-oxidanyl-3-oxidanylidene-pentan-2-yl]iminoethanoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H24 N6 O14 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-02-12 
_chem_comp.pdbx_modified_date                    2016-03-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        598.352 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     48N 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4Y4L 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
48N O1  O1A O 0 1 N N N 166.394 62.355 -22.998 -0.276 -4.032 -0.846 O1  48N 1  
48N P1  PA  P 0 1 N N N 167.342 63.169 -22.181 -0.359 -2.554 -0.849 P1  48N 2  
48N O2  O2A O 0 1 N N N 168.804 62.836 -22.115 -0.471 -2.026 -2.366 O2  48N 3  
48N O3  O3A O 0 1 N N N 166.912 63.231 -20.629 0.963  -1.941 -0.164 O3  48N 4  
48N P2  PB  P 0 1 N N N 165.572 62.788 -19.876 2.537  -2.253 -0.294 P2  48N 5  
48N O4  O1B O 0 1 N N N 165.999 62.661 -18.433 2.879  -3.621 0.483  O4  48N 6  
48N O5  O2B O 0 1 N N N 164.424 63.700 -20.217 2.896  -2.394 -1.722 O5  48N 7  
48N O6  O3B O 0 1 N N N 165.241 61.322 -20.447 3.379  -1.043 0.355  O6  48N 8  
48N C1  C7T C 0 1 N N N 166.256 60.327 -20.468 4.805  -0.973 0.304  C1  48N 9  
48N C2  C6T C 0 1 N N R 165.624 58.997 -20.839 5.279  0.298  1.011  C2  48N 10 
48N O7  O6T O 0 1 N N N 165.274 58.978 -22.228 4.928  0.232  2.395  O7  48N 11 
48N C3  C5T C 0 1 N N N 166.562 57.867 -20.542 6.775  0.420  0.878  C3  48N 12 
48N O8  O5T O 0 1 N N N 167.746 58.064 -20.295 7.492  0.081  1.788  O8  48N 13 
48N C4  C4T C 0 1 N N S 166.054 56.461 -20.554 7.376  0.966  -0.392 C4  48N 14 
48N C5  C1M C 0 1 N N N 164.783 56.306 -19.719 7.496  -0.158 -1.423 C5  48N 15 
48N N1  N3T N 0 1 N N N 167.182 55.664 -20.101 8.705  1.512  -0.108 N1  48N 16 
48N C6  C2T C 0 1 N N N 167.470 55.423 -18.894 8.951  2.748  -0.333 C6  48N 17 
48N C7  C1R C 0 1 N N N 168.677 54.615 -18.649 10.296 3.301  -0.046 C7  48N 18 
48N O9  O1R O 0 1 N N N 168.924 54.194 -17.501 10.555 4.601  -0.283 O9  48N 19 
48N O10 O2R O 0 1 N N N 169.409 54.344 -19.629 11.164 2.582  0.404  O10 48N 20 
48N O11 O5* O 0 1 N N N 167.195 64.692 -22.644 -1.658 -2.088 -0.021 O11 48N 21 
48N C8  C5* C 0 1 N N N 168.132 65.662 -22.186 -2.977 -2.552 -0.316 C8  48N 22 
48N C9  C4* C 0 1 N N R 168.149 66.802 -23.185 -3.971 -1.915 0.657  C9  48N 23 
48N C10 C3* C 0 1 N N S 168.867 66.417 -24.473 -5.381 -2.490 0.417  C10 48N 24 
48N O12 O3* O 0 1 N N N 168.017 66.749 -25.572 -5.864 -3.138 1.595  O12 48N 25 
48N C11 C2* C 0 1 N N R 170.148 67.235 -24.475 -6.245 -1.250 0.083  C11 48N 26 
48N O13 O2* O 0 1 N N N 170.507 67.640 -25.789 -7.524 -1.334 0.715  O13 48N 27 
48N C12 C1* C 0 1 N N R 169.767 68.423 -23.615 -5.404 -0.097 0.688  C12 48N 28 
48N O14 O4* O 0 1 N N N 168.857 67.912 -22.643 -4.043 -0.498 0.426  O14 48N 29 
48N N2  N9  N 0 1 Y N N 170.842 69.073 -22.851 -5.707 1.170  0.016  N2  48N 30 
48N C13 C4  C 0 1 Y N N 170.984 70.398 -22.778 -6.737 2.024  0.320  C13 48N 31 
48N N3  N3  N 0 1 Y N N 170.341 71.462 -23.328 -7.719 2.029  1.216  N3  48N 32 
48N C14 C2  C 0 1 Y N N 170.755 72.717 -23.068 -8.581 3.022  1.261  C14 48N 33 
48N N4  N1  N 0 1 Y N N 171.803 72.996 -22.265 -8.521 4.051  0.435  N4  48N 34 
48N C15 C6  C 0 1 Y N N 172.519 72.026 -21.658 -7.574 4.134  -0.493 C15 48N 35 
48N N5  N6  N 0 1 N N N 173.560 72.332 -20.855 -7.518 5.216  -1.354 N5  48N 36 
48N C16 C5  C 0 1 Y N N 172.133 70.619 -21.898 -6.629 3.096  -0.581 C16 48N 37 
48N N6  N7  N 0 1 Y N N 172.557 69.401 -21.498 -5.560 2.846  -1.373 N6  48N 38 
48N C17 C8  C 0 1 Y N N 171.775 68.469 -22.084 -5.014 1.718  -1.021 C17 48N 39 
48N H1  H1  H 0 1 N N N 168.980 62.072 -22.651 -0.529 -1.064 -2.444 H1  48N 40 
48N H2  H2  H 0 1 N N N 165.448 63.212 -17.890 2.669  -3.601 1.427  H2  48N 41 
48N H3  H3  H 0 1 N N N 166.721 60.252 -19.474 5.230  -1.845 0.800  H3  48N 42 
48N H4  H4  H 0 1 N N N 167.021 60.594 -21.212 5.131  -0.952 -0.736 H4  48N 43 
48N H5  H5  H 0 1 N N N 164.716 58.866 -20.232 4.801  1.166  0.557  H5  48N 44 
48N H6  H6  H 0 1 N N N 164.679 59.695 -22.415 5.319  -0.518 2.864  H6  48N 45 
48N H7  H7  H 0 1 N N N 165.815 56.186 -21.592 6.736  1.755  -0.787 H7  48N 46 
48N H8  H8  H 0 1 N N N 164.445 55.260 -19.755 8.024  0.212  -2.303 H8  48N 47 
48N H9  H9  H 0 1 N N N 164.993 56.587 -18.676 8.050  -0.990 -0.990 H9  48N 48 
48N H10 H10 H 0 1 N N N 163.996 56.960 -20.124 6.500  -0.494 -1.712 H10 48N 49 
48N H11 H11 H 0 1 N N N 166.861 55.792 -18.082 8.179  3.388  -0.734 H11 48N 50 
48N H12 H12 H 0 1 N N N 169.715 53.669 -17.519 11.446 4.916  -0.080 H12 48N 51 
48N H13 H13 H 0 1 N N N 169.133 65.211 -22.117 -3.240 -2.275 -1.337 H13 48N 52 
48N H14 H14 H 0 1 N N N 167.829 66.036 -21.197 -3.012 -3.637 -0.214 H14 48N 53 
48N H15 H15 H 0 1 N N N 167.114 67.087 -23.424 -3.660 -2.108 1.684  H15 48N 54 
48N H16 H16 H 0 1 N N N 169.106 65.343 -24.462 -5.371 -3.185 -0.423 H16 48N 55 
48N H17 H17 H 0 1 N N N 167.230 66.218 -25.536 -6.748 -3.518 1.500  H17 48N 56 
48N H18 H18 H 0 1 N N N 170.958 66.666 -23.995 -6.352 -1.129 -0.995 H18 48N 57 
48N H19 H19 H 0 1 N N N 171.309 68.148 -25.756 -8.052 -2.095 0.434  H19 48N 58 
48N H20 H20 H 0 1 N N N 169.264 69.170 -24.246 -5.583 -0.013 1.760  H20 48N 59 
48N H21 H21 H 0 1 N N N 170.223 73.539 -23.524 -9.367 2.995  2.001  H21 48N 60 
48N H22 H22 H 0 1 N N N 173.670 73.325 -20.815 -8.176 5.926  -1.283 H22 48N 61 
48N H23 H23 H 0 1 N N N 173.387 71.978 -19.936 -6.822 5.265  -2.028 H23 48N 62 
48N H24 H24 H 0 1 N N N 171.880 67.401 -21.958 -4.142 1.281  -1.484 H24 48N 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
48N O13 C11 SING N N 1  
48N O12 C10 SING N N 2  
48N C11 C10 SING N N 3  
48N C11 C12 SING N N 4  
48N C10 C9  SING N N 5  
48N C12 N2  SING N N 6  
48N C12 O14 SING N N 7  
48N N3  C14 DOUB Y N 8  
48N N3  C13 SING Y N 9  
48N C9  O14 SING N N 10 
48N C9  C8  SING N N 11 
48N C14 N4  SING Y N 12 
48N O1  P1  DOUB N N 13 
48N N2  C13 SING Y N 14 
48N N2  C17 SING Y N 15 
48N C13 C16 DOUB Y N 16 
48N O11 C8  SING N N 17 
48N O11 P1  SING N N 18 
48N N4  C15 DOUB Y N 19 
48N O7  C2  SING N N 20 
48N P1  O2  SING N N 21 
48N P1  O3  SING N N 22 
48N C17 N6  DOUB Y N 23 
48N C16 C15 SING Y N 24 
48N C16 N6  SING Y N 25 
48N C15 N5  SING N N 26 
48N C2  C3  SING N N 27 
48N C2  C1  SING N N 28 
48N O3  P2  SING N N 29 
48N C4  C3  SING N N 30 
48N C4  N1  SING N N 31 
48N C4  C5  SING N N 32 
48N C3  O8  DOUB N N 33 
48N C1  O6  SING N N 34 
48N O6  P2  SING N N 35 
48N O5  P2  DOUB N N 36 
48N N1  C6  DOUB N N 37 
48N P2  O4  SING N N 38 
48N O10 C7  DOUB N N 39 
48N C6  C7  SING N N 40 
48N C7  O9  SING N N 41 
48N O2  H1  SING N N 42 
48N O4  H2  SING N N 43 
48N C1  H3  SING N N 44 
48N C1  H4  SING N N 45 
48N C2  H5  SING N N 46 
48N O7  H6  SING N N 47 
48N C4  H7  SING N N 48 
48N C5  H8  SING N N 49 
48N C5  H9  SING N N 50 
48N C5  H10 SING N N 51 
48N C6  H11 SING N N 52 
48N O9  H12 SING N N 53 
48N C8  H13 SING N N 54 
48N C8  H14 SING N N 55 
48N C9  H15 SING N N 56 
48N C10 H16 SING N N 57 
48N O12 H17 SING N N 58 
48N C11 H18 SING N N 59 
48N O13 H19 SING N N 60 
48N C12 H20 SING N N 61 
48N C14 H21 SING N N 62 
48N N5  H22 SING N N 63 
48N N5  H23 SING N N 64 
48N C17 H24 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
48N SMILES           ACDLabs              12.01 "O=C(O)/C=N/C(C(=O)C(O)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O)C" 
48N InChI            InChI                1.03  
"InChI=1S/C17H24N6O14P2/c1-7(19-2-10(25)26)12(27)8(24)3-34-38(30,31)37-39(32,33)35-4-9-13(28)14(29)17(36-9)23-6-22-11-15(18)20-5-21-16(11)23/h2,5-9,13-14,17,24,28-29H,3-4H2,1H3,(H,25,26)(H,30,31)(H,32,33)(H2,18,20,21)/b19-2+/t7-,8+,9+,13+,14+,17+/m0/s1" 
48N InChIKey         InChI                1.03  DLIOKNCFMMUGKN-VGULMVRRSA-N 
48N SMILES_CANONICAL CACTVS               3.385 "C[C@H](N=CC(O)=O)C(=O)[C@H](O)CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 
48N SMILES           CACTVS               3.385 "C[CH](N=CC(O)=O)C(=O)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 
48N SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@@H](C(=O)[C@@H](COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)O)/N=C/C(=O)O" 
48N SMILES           "OpenEye OEToolkits" 1.9.2 "CC(C(=O)C(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)O)N=CC(=O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
48N "SYSTEMATIC NAME" ACDLabs              12.01 
"(3R,5R,8R,10S,11E)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]-3,5,8-trihydroxy-10-methyl-9-oxo-2,4,6-trioxa-11-aza-3,5-diphosphatridec-11-en-13-oic acid 3,5-dioxide (non-preferred name)" 
48N "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2E)-2-[(2S,4R)-5-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-4-oxidanyl-3-oxidanylidene-pentan-2-yl]iminoethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
48N "Create component" 2015-02-12 RCSB 
48N "Initial release"  2016-03-09 RCSB 
# 
