data_3GN
# 
_chem_comp.id                                    3GN 
_chem_comp.name                                  "2-[(2S)-2-methylpyrrolidin-2-yl]-1H-benzimidazole-7-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H16 N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-03-17 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        244.292 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3GN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3GN7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3GN C4   C4   C 0 1 Y N N 26.397 65.337 9.283  -1.138 0.224  0.042  C4   3GN 1  
3GN C5   C5   C 0 1 Y N N 26.876 66.112 10.375 -2.476 -0.182 -0.046 C5   3GN 2  
3GN C6   C6   C 0 1 Y N N 28.263 66.030 10.725 -3.474 0.776  -0.226 C6   3GN 3  
3GN C8   C8   C 0 1 Y N N 25.327 64.292 7.685  1.043  0.495  0.221  C8   3GN 4  
3GN C10  C10  C 0 1 N N N 26.020 67.021 11.185 -2.827 -1.612 0.051  C10  3GN 5  
3GN C13  C13  C 0 1 N N S 24.197 63.836 6.778  2.512  0.197  0.385  C13  3GN 6  
3GN C15  C15  C 0 1 N N N 22.997 65.586 5.677  3.568  -1.689 -0.650 C15  3GN 7  
3GN C17  C17  C 0 1 N N N 24.539 63.814 5.288  3.289  0.689  -0.854 C17  3GN 8  
3GN C1   C1   C 0 1 Y N N 29.142 65.190 9.995  -3.145 2.116  -0.318 C1   3GN 9  
3GN C2   C2   C 0 1 Y N N 28.656 64.423 8.908  -1.832 2.527  -0.232 C2   3GN 10 
3GN C3   C3   C 0 1 Y N N 27.312 64.481 8.552  -0.814 1.588  -0.052 C3   3GN 11 
3GN N7   N7   N 0 1 Y N N 26.585 63.852 7.562  0.536  1.682  0.066  N7   3GN 12 
3GN N9   N9   N 0 1 Y N N 25.159 65.168 8.684  0.054  -0.440 0.219  N9   3GN 13 
3GN N11  N11  N 0 1 N N N 24.700 66.765 11.199 -4.116 -1.996 -0.035 N11  3GN 14 
3GN O12  O12  O 0 1 N N N 26.462 67.965 11.819 -1.954 -2.443 0.207  O12  3GN 15 
3GN N14  N14  N 0 1 N N N 23.030 64.741 6.880  2.721  -1.259 0.482  N14  3GN 16 
3GN C16  C16  C 0 1 N N N 24.213 65.222 4.830  4.354  -0.419 -1.061 C16  3GN 17 
3GN C18  C18  C 0 1 N N N 23.810 62.406 7.178  3.045  0.888  1.642  C18  3GN 18 
3GN H6   H6   H 0 1 N N N 28.642 66.613 11.552 -4.507 0.469  -0.295 H6   3GN 19 
3GN H15  H15  H 0 1 N N N 22.072 65.403 5.111  4.255  -2.474 -0.333 H15  3GN 20 
3GN H15A H15A H 0 0 N N N 23.021 66.651 5.951  2.949  -2.036 -1.477 H15A 3GN 21 
3GN H17  H17  H 0 1 N N N 25.599 63.570 5.121  2.630  0.758  -1.720 H17  3GN 22 
3GN H17A H17A H 0 0 N N N 23.980 63.045 4.734  3.765  1.649  -0.654 H17A 3GN 23 
3GN H1   H1   H 0 1 N N N 30.185 65.135 10.269 -3.926 2.849  -0.458 H1   3GN 24 
3GN H2   H2   H 0 1 N N N 29.332 63.790 8.353  -1.590 3.577  -0.305 H2   3GN 25 
3GN HN9  HN9  H 0 1 N N N 24.304 65.615 8.947  0.168  -1.397 0.322  HN9  3GN 26 
3GN HN11 HN11 H 0 0 N N N 24.259 67.451 11.778 -4.813 -1.333 -0.160 HN11 3GN 27 
3GN HN1A HN1A H 0 0 N N N 24.240 66.020 10.715 -4.347 -2.936 0.029  HN1A 3GN 28 
3GN HN14 HN14 H 0 0 N N N 22.188 64.205 6.942  3.144  -1.506 1.365  HN14 3GN 29 
3GN H16  H16  H 0 1 N N N 23.984 65.257 3.755  5.213  -0.262 -0.408 H16  3GN 30 
3GN H16A H16A H 0 0 N N N 25.052 65.922 4.958  4.664  -0.472 -2.105 H16A 3GN 31 
3GN H18  H18  H 0 1 N N N 23.717 61.784 6.275  2.496  0.531  2.513  H18  3GN 32 
3GN H18A H18A H 0 0 N N N 24.587 61.986 7.834  4.104  0.659  1.761  H18A 3GN 33 
3GN H18B H18B H 0 0 N N N 22.848 62.422 7.712  2.915  1.966  1.547  H18B 3GN 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3GN C4  C5   DOUB Y N 1  
3GN C4  C3   SING Y N 2  
3GN C4  N9   SING Y N 3  
3GN C5  C6   SING Y N 4  
3GN C5  C10  SING N N 5  
3GN C6  C1   DOUB Y N 6  
3GN C8  C13  SING N N 7  
3GN C8  N7   DOUB Y N 8  
3GN C8  N9   SING Y N 9  
3GN C10 N11  SING N N 10 
3GN C10 O12  DOUB N N 11 
3GN C13 C17  SING N N 12 
3GN C13 N14  SING N N 13 
3GN C13 C18  SING N N 14 
3GN C15 N14  SING N N 15 
3GN C15 C16  SING N N 16 
3GN C17 C16  SING N N 17 
3GN C1  C2   SING Y N 18 
3GN C2  C3   DOUB Y N 19 
3GN C3  N7   SING Y N 20 
3GN C6  H6   SING N N 21 
3GN C15 H15  SING N N 22 
3GN C15 H15A SING N N 23 
3GN C17 H17  SING N N 24 
3GN C17 H17A SING N N 25 
3GN C1  H1   SING N N 26 
3GN C2  H2   SING N N 27 
3GN N9  HN9  SING N N 28 
3GN N11 HN11 SING N N 29 
3GN N11 HN1A SING N N 30 
3GN N14 HN14 SING N N 31 
3GN C16 H16  SING N N 32 
3GN C16 H16A SING N N 33 
3GN C18 H18  SING N N 34 
3GN C18 H18A SING N N 35 
3GN C18 H18B SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3GN SMILES           ACDLabs              10.04 "O=C(N)c3c1c(nc(n1)C2(NCCC2)C)ccc3"                                                                                              
3GN SMILES_CANONICAL CACTVS               3.341 "C[C@]1(CCCN1)c2[nH]c3c(cccc3C(N)=O)n2"                                                                                          
3GN SMILES           CACTVS               3.341 "C[C]1(CCCN1)c2[nH]c3c(cccc3C(N)=O)n2"                                                                                           
3GN SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@]1(CCCN1)c2[nH]c3c(cccc3n2)C(=O)N"                                                                                          
3GN SMILES           "OpenEye OEToolkits" 1.5.0 "CC1(CCCN1)c2[nH]c3c(cccc3n2)C(=O)N"                                                                                             
3GN InChI            InChI                1.03  "InChI=1S/C13H16N4O/c1-13(6-3-7-15-13)12-16-9-5-2-4-8(11(14)18)10(9)17-12/h2,4-5,15H,3,6-7H2,1H3,(H2,14,18)(H,16,17)/t13-/m0/s1" 
3GN InChIKey         InChI                1.03  JNAHVYVRKWKWKQ-ZDUSSCGKSA-N                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3GN "SYSTEMATIC NAME" ACDLabs              10.04 "2-[(2S)-2-methylpyrrolidin-2-yl]-1H-benzimidazole-7-carboxamide" 
3GN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[(2S)-2-methylpyrrolidin-2-yl]-3H-benzimidazole-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3GN "Create component"     2009-03-17 RCSB 
3GN "Modify aromatic_flag" 2011-06-04 RCSB 
3GN "Modify descriptor"    2011-06-04 RCSB 
# 
