data_2JN
# 
_chem_comp.id                                    2JN 
_chem_comp.name                                  2-methyl-D-norleucine 
_chem_comp.type                                  "D-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C7 H15 N O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-11-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        145.199 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2JN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4N7Y 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2JN O   OAE O 0 1 N N N Y N Y 10.030 12.373 13.757 -2.011 -1.604 0.157  OAE 2JN 1  
2JN C   CAG C 0 1 N N N Y N Y 10.798 13.271 13.416 -1.998 -0.412 -0.041 CAG 2JN 2  
2JN CA  CAQ C 0 1 N N R Y N N 11.130 14.425 14.362 -0.714 0.362  0.102  CAQ 2JN 3  
2JN CAA CAA C 0 1 N N N N N N 11.128 15.735 13.573 -0.634 0.964  1.506  CAA 2JN 4  
2JN N   NAC N 0 1 N N N Y Y N 12.449 14.188 14.965 -0.678 1.440  -0.895 NAC 2JN 5  
2JN CAO CAO C 0 1 N N N N N N 10.054 14.500 15.447 0.475  -0.576 -0.119 CAO 2JN 6  
2JN CAM CAM C 0 1 N N N N N N 10.309 13.414 16.494 1.779  0.210  0.026  CAM 2JN 7  
2JN CAK CAK C 0 1 N N N N N N 10.295 14.038 17.891 2.967  -0.728 -0.195 CAK 2JN 8  
2JN CAI CAI C 0 1 N N N N N N 9.737  13.029 18.896 4.272  0.058  -0.050 CAI 2JN 9  
2JN OXT O1  O 0 1 N Y N Y N Y 11.492 13.475 12.115 -3.128 0.221  -0.394 O1  2JN 10 
2JN H1  H1  H 0 1 N N N N N N 11.366 16.570 14.248 -0.660 0.164  2.246  H1  2JN 11 
2JN H4  H2  H 0 1 N N N N N N 11.882 15.683 12.774 0.295  1.524  1.610  H2  2JN 12 
2JN H3  H3  H 0 1 N N N N N N 10.134 15.894 13.129 -1.481 1.632  1.664  H3  2JN 13 
2JN H   H4  H 0 1 N N N Y Y N 12.672 14.940 15.585 0.144  2.014  -0.779 H4  2JN 14 
2JN H2  H5  H 0 1 N Y N Y Y N 12.432 13.328 15.476 -0.729 1.068  -1.832 H5  2JN 15 
2JN H7  H7  H 0 1 N N N N N N 10.087 15.488 15.928 0.449  -1.376 0.621  H7  2JN 16 
2JN H8  H8  H 0 1 N N N N N N 9.064  14.346 14.993 0.418  -1.005 -1.120 H8  2JN 17 
2JN H9  H9  H 0 1 N N N N N N 9.522  12.648 16.427 1.806  1.010  -0.714 H9  2JN 18 
2JN H10 H10 H 0 1 N N N N N N 11.289 12.950 16.310 1.836  0.639  1.027  H10 2JN 19 
2JN H11 H11 H 0 1 N N N N N N 11.320 14.314 18.179 2.941  -1.528 0.545  H11 2JN 20 
2JN H12 H12 H 0 1 N N N N N N 9.661  14.937 17.884 2.911  -1.157 -1.195 H12 2JN 21 
2JN H13 H13 H 0 1 N N N N N N 9.727  13.478 19.900 4.298  0.858  -0.790 H13 2JN 22 
2JN H14 H14 H 0 1 N N N N N N 8.712  12.753 18.608 4.328  0.487  0.951  H14 2JN 23 
2JN H15 H15 H 0 1 N N N N N N 10.371 12.130 18.903 5.118  -0.610 -0.207 H15 2JN 24 
2JN HXT H16 H 0 1 N Y N Y N Y 11.259 12.774 11.518 -3.926 -0.319 -0.477 H16 2JN 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2JN C   O   DOUB N N 1  
2JN C   CA  SING N N 2  
2JN CAA CA  SING N N 3  
2JN CA  N   SING N N 4  
2JN CA  CAO SING N N 5  
2JN CAO CAM SING N N 6  
2JN CAM CAK SING N N 7  
2JN CAK CAI SING N N 8  
2JN C   OXT SING N N 9  
2JN CAA H1  SING N N 10 
2JN CAA H4  SING N N 11 
2JN CAA H3  SING N N 12 
2JN N   H   SING N N 13 
2JN N   H2  SING N N 14 
2JN CAO H7  SING N N 15 
2JN CAO H8  SING N N 16 
2JN CAM H9  SING N N 17 
2JN CAM H10 SING N N 18 
2JN CAK H11 SING N N 19 
2JN CAK H12 SING N N 20 
2JN CAI H13 SING N N 21 
2JN CAI H14 SING N N 22 
2JN CAI H15 SING N N 23 
2JN OXT HXT SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2JN SMILES           ACDLabs              12.01 "O=C(O)C(N)(CCCC)C"                                                         
2JN InChI            InChI                1.03  "InChI=1S/C7H15NO2/c1-3-4-5-7(2,8)6(9)10/h3-5,8H2,1-2H3,(H,9,10)/t7-/m1/s1" 
2JN InChIKey         InChI                1.03  LKZQHZQXROBVOO-SSDOTTSWSA-N                                                 
2JN SMILES_CANONICAL CACTVS               3.385 "CCCC[C@@](C)(N)C(O)=O"                                                     
2JN SMILES           CACTVS               3.385 "CCCC[C](C)(N)C(O)=O"                                                       
2JN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCC[C@](C)(C(=O)O)N"                                                      
2JN SMILES           "OpenEye OEToolkits" 1.7.6 "CCCCC(C)(C(=O)O)N"                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2JN "SYSTEMATIC NAME" ACDLabs              12.01 2-methyl-D-norleucine                  
2JN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2-azanyl-2-methyl-hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2JN "Create component" 2013-11-01 RCSB 
2JN "Initial release"  2014-02-19 RCSB 
2JN "Modify backbone"  2023-11-03 PDBE 
2JN "Modify PCM"       2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 2JN DLE Norleucine  "Named protein modification" "Amino-acid side chain" "Any position" ? ? ? ? 
2 2JN DLE Methylation "Named protein modification" "Amino-acid backbone"   "Any position" ? ? ? ? 
# 
