data_Z9M
#

_chem_comp.id                                   Z9M
_chem_comp.name                                 2-amino-2-deoxy-4-O-phosphono-beta-D-glucopyranose
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H14 N O8 P"
_chem_comp.mon_nstd_parent_comp_id              GCS
_chem_comp.pdbx_synonyms                        
;4-O-phosphono-beta-D-glucosamine; 2-amino-2-deoxy-4-O-phosphono-beta-D-glucose;
2-amino-2-deoxy-4-O-phosphono-D-glucose; 2-amino-2-deoxy-4-O-phosphono-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-12-18
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       259.151
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Z9M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3PHO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  Z9M  4-O-phosphono-beta-D-glucosamine              PDB  ?  
2  Z9M  2-amino-2-deoxy-4-O-phosphono-beta-D-glucose  PDB  ?  
3  Z9M  2-amino-2-deoxy-4-O-phosphono-D-glucose       PDB  ?  
4  Z9M  2-amino-2-deoxy-4-O-phosphono-glucose         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Z9M  N2    N1    N  0  1  N  N  N  -71.470  -39.099  6.069  -3.122   2.278  -0.276  N2    Z9M   1  
Z9M  P1    P1    P  0  1  N  N  N  -73.301  -35.553  2.077   2.627   0.226   0.089  P1    Z9M   2  
Z9M  O6    O6    O  0  1  N  N  N  -68.053  -34.325  3.636  -0.569  -3.623  -0.302  O6    Z9M   3  
Z9M  O1    O1    O  0  1  N  Y  N  -69.198  -37.637  7.026  -4.171  -0.280   0.506  O1    Z9M   4  
Z9M  O3    O3    O  0  1  N  N  N  -73.274  -37.415  4.455  -0.255   2.493  -0.074  O3    Z9M   5  
Z9M  C1    C1    C  0  1  N  N  R  -69.728  -37.413  5.717  -2.911  -0.161  -0.158  C1    Z9M   6  
Z9M  O4    O4    O  0  1  N  N  N  -71.774  -35.889  2.460   1.221   0.122  -0.689  O4    Z9M   7  
Z9M  C2    C2    C  0  1  N  N  R  -71.232  -37.691  5.720  -2.269   1.181   0.202  C2    Z9M   8  
Z9M  O5    O5    O  0  1  N  N  N  -69.493  -36.051  5.332  -2.052  -1.225   0.257  O5    Z9M   9  
Z9M  C3    C3    C  0  1  N  N  R  -71.848  -37.393  4.352  -0.893   1.276  -0.464  C3    Z9M  10  
Z9M  O9    O9    O  0  1  N  N  N  -73.329  -35.254  0.486   2.728  -0.874   1.074  O9    Z9M  11  
Z9M  C4    C4    C  0  1  N  N  S  -71.395  -36.028  3.832  -0.040   0.084  -0.018  C4    Z9M  12  
Z9M  O7    O7    O  0  1  N  N  N  -74.263  -36.618  2.458   3.836   0.113  -0.968  O7    Z9M  13  
Z9M  C5    C5    C  0  1  N  N  R  -69.879  -35.868  3.962  -0.768  -1.215  -0.369  C5    Z9M  14  
Z9M  O8    O8    O  0  1  N  N  N  -73.658  -34.138  2.777   2.713   1.640   0.854  O8    Z9M  15  
Z9M  C6    C6    C  0  1  N  N  N  -69.473  -34.477  3.502   0.051  -2.409   0.127  C6    Z9M  16  
Z9M  HN21  H11N  H  0  0  N  N  N  -72.453  -39.281  6.071  -4.038   2.234   0.146  HN21  Z9M  17  
Z9M  HN22  H12N  H  0  0  N  Y  N  -71.023  -39.689  5.396  -2.689   3.173  -0.108  HN22  Z9M  18  
Z9M  HO1   H1    H  0  1  N  Y  N  -69.354  -38.539  7.281  -4.636  -1.108   0.323  HO1   Z9M  19  
Z9M  HO3   H3O   H  0  1  N  Y  N  -73.656  -37.230  3.605  -0.746   3.290  -0.320  HO3   Z9M  20  
Z9M  H1    H11   H  0  1  N  N  N  -69.248  -38.092  4.997  -3.062  -0.214  -1.236  H1    Z9M  21  
Z9M  H2    H21   H  0  1  N  N  N  -71.709  -37.042  6.470  -2.157   1.253   1.284  H2    Z9M  22  
Z9M  H3    H31   H  0  1  N  N  N  -71.513  -38.165  3.643  -1.011   1.256  -1.548  H3    Z9M  23  
Z9M  H4    H41   H  0  1  N  N  N  -71.881  -35.246  4.434   0.120   0.134   1.059  H4    Z9M  24  
Z9M  H7O   H7O   H  0  1  N  N  N  -74.719  -36.926  1.683   4.714   0.168  -0.568  H7O   Z9M  25  
Z9M  H5    H51   H  0  1  N  N  N  -69.385  -36.616  3.324  -0.890  -1.283  -1.450  H5    Z9M  26  
Z9M  H8O   H8O   H  0  1  N  N  N  -73.797  -33.479  2.107   2.654   2.408   0.269  H8O   Z9M  27  
Z9M  H61   H61   H  0  1  N  N  N  -69.982  -33.723  4.120   0.097  -2.390   1.216  H61   Z9M  28  
Z9M  H62   H62   H  0  1  N  N  N  -69.759  -34.341  2.448   1.060  -2.352  -0.280  H62   Z9M  29  
Z9M  HO6   H1O   H  0  1  N  Y  N  -67.799  -33.456  3.349  -0.103  -4.423  -0.022  HO6   Z9M  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Z9M  C2  N2    SING  N  N   1  
Z9M  N2  HN21  SING  N  N   2  
Z9M  N2  HN22  SING  N  N   3  
Z9M  O9  P1    DOUB  N  N   4  
Z9M  P1  O7    SING  N  N   5  
Z9M  P1  O4    SING  N  N   6  
Z9M  P1  O8    SING  N  N   7  
Z9M  C6  O6    SING  N  N   8  
Z9M  C1  O1    SING  N  N   9  
Z9M  O1  HO1   SING  N  N  10  
Z9M  C3  O3    SING  N  N  11  
Z9M  O3  HO3   SING  N  N  12  
Z9M  O5  C1    SING  N  N  13  
Z9M  C1  C2    SING  N  N  14  
Z9M  C1  H1    SING  N  N  15  
Z9M  O4  C4    SING  N  N  16  
Z9M  C3  C2    SING  N  N  17  
Z9M  C2  H2    SING  N  N  18  
Z9M  C5  O5    SING  N  N  19  
Z9M  C4  C3    SING  N  N  20  
Z9M  C3  H3    SING  N  N  21  
Z9M  C4  C5    SING  N  N  22  
Z9M  C4  H4    SING  N  N  23  
Z9M  O7  H7O   SING  N  N  24  
Z9M  C6  C5    SING  N  N  25  
Z9M  C5  H5    SING  N  N  26  
Z9M  O8  H8O   SING  N  N  27  
Z9M  C6  H61   SING  N  N  28  
Z9M  C6  H62   SING  N  N  29  
Z9M  O6  HO6   SING  N  N  30  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Z9M  SMILES            ACDLabs               12.01  "O=P(O)(O)OC1C(OC(O)C(N)C1O)CO"  
Z9M  InChI             InChI                 1.03   "InChI=1S/C6H14NO8P/c7-3-4(9)5(15-16(11,12)13)2(1-8)14-6(3)10/h2-6,8-10H,1,7H2,(H2,11,12,13)/t2-,3-,4-,5-,6-/m1/s1"  
Z9M  InChIKey          InChI                 1.03   QWDBGVNDGYUIAC-QZABAPFNSA-N  
Z9M  SMILES_CANONICAL  CACTVS                3.385  "N[C@H]1[C@H](O)O[C@H](CO)[C@@H](O[P](O)(O)=O)[C@@H]1O"  
Z9M  SMILES            CACTVS                3.385  "N[CH]1[CH](O)O[CH](CO)[CH](O[P](O)(O)=O)[CH]1O"  
Z9M  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)N)O)OP(=O)(O)O)O"  
Z9M  SMILES            "OpenEye OEToolkits"  1.7.6  "C(C1C(C(C(C(O1)O)N)O)OP(=O)(O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Z9M  "SYSTEMATIC NAME"            ACDLabs               12.01  2-amino-2-deoxy-4-O-phosphono-beta-D-glucopyranose  
Z9M  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.7.6  "[(2R,3S,4R,5R,6R)-5-azanyl-2-(hydroxymethyl)-4,6-bis(oxidanyl)oxan-3-yl] dihydrogen phosphate"  
Z9M  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    b-D-GlcpN4PO3  
#
_pdbx_chem_comp_related.comp_id            Z9M
_pdbx_chem_comp_related.related_comp_id    GCS
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  Z9M  C1    GCS  C1    "Carbohydrate core"  
 2  Z9M  C2    GCS  C2    "Carbohydrate core"  
 3  Z9M  C3    GCS  C3    "Carbohydrate core"  
 4  Z9M  C4    GCS  C4    "Carbohydrate core"  
 5  Z9M  C5    GCS  C5    "Carbohydrate core"  
 6  Z9M  C6    GCS  C6    "Carbohydrate core"  
 7  Z9M  N2    GCS  N2    "Carbohydrate core"  
 8  Z9M  O1    GCS  O1    "Carbohydrate core"  
 9  Z9M  O3    GCS  O3    "Carbohydrate core"  
10  Z9M  O4    GCS  O4    "Carbohydrate core"  
11  Z9M  O5    GCS  O5    "Carbohydrate core"  
12  Z9M  O6    GCS  O6    "Carbohydrate core"  
13  Z9M  HO1   GCS  HO1   "Carbohydrate core"  
14  Z9M  H1    GCS  H1    "Carbohydrate core"  
15  Z9M  HN21  GCS  HN21  "Carbohydrate core"  
16  Z9M  HN22  GCS  HN22  "Carbohydrate core"  
17  Z9M  HO6   GCS  HO6   "Carbohydrate core"  
18  Z9M  H2    GCS  H2    "Carbohydrate core"  
19  Z9M  H3    GCS  H3    "Carbohydrate core"  
20  Z9M  HO3   GCS  HO3   "Carbohydrate core"  
21  Z9M  H4    GCS  H4    "Carbohydrate core"  
22  Z9M  H5    GCS  H5    "Carbohydrate core"  
23  Z9M  H61   GCS  H61   "Carbohydrate core"  
24  Z9M  H62   GCS  H62   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
Z9M  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
Z9M  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
Z9M  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
Z9M  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Z9M  "Create component"          2012-12-18  RCSB  
Z9M  "Modify atom id"            2014-01-13  RCSB  
Z9M  "Initial release"           2015-06-24  RCSB  
Z9M  "Other modification"        2020-07-03  RCSB  
Z9M  "Modify parent residue"     2020-07-17  RCSB  
Z9M  "Modify synonyms"           2020-07-17  RCSB  
Z9M  "Modify linking type"       2020-07-17  RCSB  
Z9M  "Modify atom id"            2020-07-17  RCSB  
Z9M  "Modify component atom id"  2020-07-17  RCSB  
Z9M  "Modify leaving atom flag"  2020-07-17  RCSB  
##
