data_YSM
#

_chem_comp.id                                   YSM
_chem_comp.name                                 "5-(3-{3-chloro-5-[(3-fluorophenyl)methoxy]phenyl}-2-oxo-2H-[1,3'-bipyridin]-5-yl)pyrimidine-2,4(1H,3H)-dione"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H18 Cl F N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-30
_chem_comp.pdbx_modified_date                   2021-06-25
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       516.908
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YSM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7M8O
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YSM  C1   C1   C   0  1  N  N  N  -20.641  -4.348  -26.985  -1.255  -1.396   0.576  C1   YSM   1  
YSM  F1   F1   F   0  1  N  N  N  -18.966  -6.292  -36.914   8.524  -1.987  -1.079  F1   YSM   2  
YSM  N1   N1   N   0  1  N  N  N  -20.354  -4.519  -25.686  -2.454  -1.893   0.217  N1   YSM   3  
YSM  C2   C2   C   0  1  Y  N  N  -18.969  -4.759  -25.269  -2.659  -3.278   0.239  C2   YSM   4  
YSM  C3   C3   C   0  1  Y  N  N  -18.073  -3.687  -25.234  -3.546  -3.843   1.145  C3   YSM   5  
YSM  N3   N2   N   0  1  N  N  N  -24.654  -3.720  -21.916  -5.362   2.753  -2.194  N3   YSM   6  
YSM  O3   O1   O   0  1  N  N  N  -26.960  -3.804  -21.472  -7.377   3.535  -1.738  O3   YSM   7  
YSM  C4   C4   C   0  1  Y  N  N  -16.340  -5.041  -24.482  -3.113  -5.960   0.344  C4   YSM   8  
YSM  O4   O2   O   0  1  N  N  N  -21.801  -5.690  -32.040   3.755   0.519  -0.177  O4   YSM   9  
YSM  C5   C5   C   0  1  Y  N  N  -17.199  -6.145  -24.494  -2.219  -5.470  -0.591  C5   YSM  10  
YSM  C6   C6   C   0  1  Y  N  N  -18.523  -6.013  -24.886  -1.982  -4.107  -0.652  C6   YSM  11  
YSM  C7   C7   C   0  1  N  N  N  -21.313  -4.429  -24.754  -3.467  -1.073  -0.167  C7   YSM  12  
YSM  C8   C8   C   0  1  N  N  N  -22.637  -4.173  -25.104  -3.295   0.292  -0.198  C8   YSM  13  
YSM  C9   C9   C   0  1  N  N  N  -23.786  -4.072  -24.092  -4.411   1.174  -0.619  C9   YSM  14  
YSM  C10  C10  C   0  1  N  N  N  -23.592  -3.796  -22.742  -4.322   1.965  -1.853  C10  YSM  15  
YSM  C11  C11  C   0  1  N  N  N  -25.102  -4.250  -24.532  -5.544   1.272   0.131  C11  YSM  16  
YSM  C12  C12  C   0  1  N  N  N  -25.899  -3.896  -22.371  -6.454   2.813  -1.411  C12  YSM  17  
YSM  C13  C13  C   0  1  N  N  N  -22.937  -4.012  -26.441  -2.053   0.847   0.171  C13  YSM  18  
YSM  C14  C14  C   0  1  N  N  N  -21.938  -4.099  -27.386  -1.029   0.001   0.560  C14  YSM  19  
YSM  C15  C15  C   0  1  Y  N  N  -22.280  -3.913  -28.860   0.289   0.552   0.955  C15  YSM  20  
YSM  C16  C16  C   0  1  Y  N  N  -22.976  -2.784  -29.281   0.400   1.351   2.092  C16  YSM  21  
YSM  C17  C17  C   0  1  Y  N  N  -23.285  -2.622  -30.632   1.630   1.862   2.458  C17  YSM  22  
YSM  C18  C18  C   0  1  Y  N  N  -22.913  -3.580  -31.568   2.753   1.584   1.699  C18  YSM  23  
YSM  C20  C19  C   0  1  N  N  N  -20.410  -5.668  -32.268   4.990   1.085   0.267  C20  YSM  24  
YSM  C21  C20  C   0  1  Y  N  N  -20.113  -6.554  -33.470   6.095   0.679  -0.674  C21  YSM  25  
YSM  C22  C21  C   0  1  Y  N  N  -20.326  -7.925  -33.381   6.395   1.468  -1.769  C22  YSM  26  
YSM  C23  C22  C   0  1  Y  N  N  -20.088  -8.751  -34.473   7.408   1.097  -2.633  C23  YSM  27  
YSM  C24  C23  C   0  1  Y  N  N  -19.631  -8.194  -35.656   8.124  -0.062  -2.402  C24  YSM  28  
YSM  C26  C24  C   0  1  Y  N  N  -19.665  -5.993  -34.653   6.813  -0.477  -0.438  C26  YSM  29  
YSM  C19  C25  C   0  1  Y  N  N  -22.221  -4.713  -31.135   2.649   0.790   0.565  C19  YSM  30  
YSM  C25  C26  C   0  1  Y  N  N  -19.420  -6.822  -35.744   7.825  -0.853  -1.305  C25  YSM  31  
YSM  C27  C27  C   0  1  Y  N  N  -21.905  -4.880  -29.785   1.421   0.268   0.194  C27  YSM  32  
YSM  N2   N3   N   0  1  Y  N  N  -16.789  -3.837  -24.855  -3.742  -5.147   1.170  N2   YSM  33  
YSM  N4   N4   N   0  1  N  N  N  -26.133  -4.158  -23.669  -6.553   2.098  -0.279  N4   YSM  34  
YSM  O1   O3   O   0  1  N  N  N  -19.640  -4.429  -27.965  -0.363  -2.152   0.921  O1   YSM  35  
YSM  O2   O4   O   0  1  N  N  N  -22.314  -3.598  -22.216  -3.329   1.910  -2.555  O2   YSM  36  
YSM  CL1  CL1  CL  0  0  N  N  N  -24.163  -1.164  -31.146   1.768   2.857   3.874  CL1  YSM  37  
YSM  H1   H1   H   0  1  N  N  N  -18.422  -2.706  -25.520  -4.080  -3.210   1.838  H1   YSM  38  
YSM  H6   H2   H   0  1  N  N  N  -24.508  -3.529  -20.945  -5.321   3.283  -3.006  H6   YSM  39  
YSM  H2   H3   H   0  1  N  N  N  -15.313  -5.161  -24.171  -3.301  -7.022   0.395  H2   YSM  40  
YSM  H3   H4   H   0  1  N  N  N  -16.826  -7.113  -24.194  -1.712  -6.144  -1.266  H3   YSM  41  
YSM  H4   H5   H   0  1  N  N  N  -19.188  -6.864  -24.892  -1.290  -3.697  -1.373  H4   YSM  42  
YSM  H5   H6   H   0  1  N  N  N  -21.055  -4.557  -23.713  -4.419  -1.497  -0.450  H5   YSM  43  
YSM  H7   H7   H   0  1  N  N  N  -25.294  -4.463  -25.573  -5.643   0.705   1.045  H7   YSM  44  
YSM  H9   H8   H   0  1  N  N  N  -23.954  -3.818  -26.747  -1.904   1.917   0.151  H9   YSM  45  
YSM  H10  H9   H   0  1  N  N  N  -23.276  -2.035  -28.564  -0.475   1.570   2.687  H10  YSM  46  
YSM  H11  H10  H   0  1  N  N  N  -23.155  -3.450  -32.612   3.711   1.989   1.986  H11  YSM  47  
YSM  H13  H11  H   0  1  N  N  N  -19.881  -6.051  -31.383   4.906   2.171   0.283  H13  YSM  48  
YSM  H12  H12  H   0  1  N  N  N  -20.082  -4.638  -32.474   5.215   0.723   1.270  H12  YSM  49  
YSM  H14  H13  H   0  1  N  N  N  -20.680  -8.352  -32.454   5.836   2.375  -1.950  H14  YSM  50  
YSM  H15  H14  H   0  1  N  N  N  -20.257  -9.815  -34.400   7.641   1.714  -3.488  H15  YSM  51  
YSM  H16  H15  H   0  1  N  N  N  -19.438  -8.825  -36.511   8.915  -0.352  -3.077  H16  YSM  52  
YSM  H17  H16  H   0  1  N  N  N  -19.508  -4.927  -34.729   6.579  -1.093   0.418  H17  YSM  53  
YSM  H18  H17  H   0  1  N  N  N  -21.370  -5.760  -29.460   1.341  -0.354  -0.686  H18  YSM  54  
YSM  H8   H18  H   0  1  N  N  N  -27.070  -4.284  -23.993  -7.359   2.166   0.257  H8   YSM  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YSM  F1   C25  SING  N  N   1  
YSM  C25  C24  DOUB  Y  N   2  
YSM  C25  C26  SING  Y  N   3  
YSM  C24  C23  SING  Y  N   4  
YSM  C26  C21  DOUB  Y  N   5  
YSM  C23  C22  DOUB  Y  N   6  
YSM  C21  C22  SING  Y  N   7  
YSM  C21  C20  SING  N  N   8  
YSM  C20  O4   SING  N  N   9  
YSM  O4   C19  SING  N  N  10  
YSM  C18  C19  DOUB  Y  N  11  
YSM  C18  C17  SING  Y  N  12  
YSM  CL1  C17  SING  N  N  13  
YSM  C19  C27  SING  Y  N  14  
YSM  C17  C16  DOUB  Y  N  15  
YSM  C27  C15  DOUB  Y  N  16  
YSM  C16  C15  SING  Y  N  17  
YSM  C15  C14  SING  N  N  18  
YSM  O1   C1   DOUB  N  N  19  
YSM  C14  C1   SING  N  N  20  
YSM  C14  C13  DOUB  N  N  21  
YSM  C1   N1   SING  N  N  22  
YSM  C13  C8   SING  N  N  23  
YSM  N1   C2   SING  N  N  24  
YSM  N1   C7   SING  N  N  25  
YSM  C2   C3   DOUB  Y  N  26  
YSM  C2   C6   SING  Y  N  27  
YSM  C3   N2   SING  Y  N  28  
YSM  C8   C7   DOUB  N  N  29  
YSM  C8   C9   SING  N  N  30  
YSM  C6   C5   DOUB  Y  N  31  
YSM  N2   C4   DOUB  Y  N  32  
YSM  C11  C9   DOUB  N  N  33  
YSM  C11  N4   SING  N  N  34  
YSM  C5   C4   SING  Y  N  35  
YSM  C9   C10  SING  N  N  36  
YSM  N4   C12  SING  N  N  37  
YSM  C10  O2   DOUB  N  N  38  
YSM  C10  N3   SING  N  N  39  
YSM  C12  N3   SING  N  N  40  
YSM  C12  O3   DOUB  N  N  41  
YSM  C3   H1   SING  N  N  42  
YSM  N3   H6   SING  N  N  43  
YSM  C4   H2   SING  N  N  44  
YSM  C5   H3   SING  N  N  45  
YSM  C6   H4   SING  N  N  46  
YSM  C7   H5   SING  N  N  47  
YSM  C11  H7   SING  N  N  48  
YSM  C13  H9   SING  N  N  49  
YSM  C16  H10  SING  N  N  50  
YSM  C18  H11  SING  N  N  51  
YSM  C20  H13  SING  N  N  52  
YSM  C20  H12  SING  N  N  53  
YSM  C22  H14  SING  N  N  54  
YSM  C23  H15  SING  N  N  55  
YSM  C24  H16  SING  N  N  56  
YSM  C26  H17  SING  N  N  57  
YSM  C27  H18  SING  N  N  58  
YSM  N4   H8   SING  N  N  59  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YSM  SMILES            ACDLabs               12.01  "Fc1cccc(c1)COc1cc(cc(Cl)c1)C1=CC(=CN(c2cnccc2)C1=O)C1=CNC(=O)NC1=O"  
YSM  InChI             InChI                 1.03   "InChI=1S/C27H18ClFN4O4/c28-19-8-17(9-22(11-19)37-15-16-3-1-4-20(29)7-16)23-10-18(24-13-31-27(36)32-25(24)34)14-33(26(23)35)21-5-2-6-30-12-21/h1-14H,15H2,(H2,31,32,34,36)"  
YSM  InChIKey          InChI                 1.03   DGQRJEVFDWWDCX-UHFFFAOYSA-N  
YSM  SMILES_CANONICAL  CACTVS                3.385  "Fc1cccc(COc2cc(Cl)cc(c2)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O)c1"  
YSM  SMILES            CACTVS                3.385  "Fc1cccc(COc2cc(Cl)cc(c2)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O)c1"  
YSM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(cc(c1)F)COc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O"  
YSM  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(cc(c1)F)COc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YSM  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-(3-{3-chloro-5-[(3-fluorophenyl)methoxy]phenyl}-2-oxo-2H-[1,3'-bipyridin]-5-yl)pyrimidine-2,4(1H,3H)-dione"  
YSM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "5-[5-[3-chloranyl-5-[(3-fluorophenyl)methoxy]phenyl]-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1~{H}-pyrimidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YSM  "Create component"  2021-03-30  RCSB  
YSM  "Initial release"   2021-06-30  RCSB  
##
