data_YQM
#

_chem_comp.id                                   YQM
_chem_comp.name                                 Eravacycline
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H31 F N4 O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-23
_chem_comp.pdbx_modified_date                   2021-05-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       558.555
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YQM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7M4Y
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YQM  C01  C1   C  0  1  N  N  N  164.088  219.086  254.974  -5.235   1.946   2.922  C01  YQM   1  
YQM  C03  C2   C  0  1  N  N  N  165.395  217.763  253.423  -7.180   1.947   1.479  C03  YQM   2  
YQM  C04  C3   C  0  1  N  N  S  166.475  219.749  254.632  -4.975   1.602   0.539  C04  YQM   3  
YQM  C05  C4   C  0  1  N  N  S  166.016  220.880  253.575  -3.638   0.928   0.780  C05  YQM   4  
YQM  C06  C5   C  0  1  N  N  N  167.186  221.199  252.638  -2.592   1.431  -0.214  C06  YQM   5  
YQM  C07  C6   C  0  1  N  N  R  166.959  222.261  251.489  -1.204   1.019   0.286  C07  YQM   6  
YQM  C08  C7   C  0  1  N  N  N  168.332  222.569  250.752  -0.152   1.429  -0.742  C08  YQM   7  
YQM  C09  C8   C  0  1  Y  N  N  168.200  223.602  249.603   1.194   0.876  -0.354  C09  YQM   8  
YQM  C10  C9   C  0  1  Y  N  N  169.020  223.590  248.411   2.342   1.602  -0.590  C10  YQM   9  
YQM  C11  C10  C  0  1  Y  N  N  168.924  224.516  247.348   3.581   1.078  -0.249  C11  YQM  10  
YQM  C12  C11  C  0  1  Y  N  N  167.971  225.568  247.382   3.676  -0.178   0.331  C12  YQM  11  
YQM  C13  C12  C  0  1  Y  N  N  167.151  225.602  248.568   2.524  -0.920   0.581  C13  YQM  12  
YQM  C14  C13  C  0  1  Y  N  N  167.250  224.628  249.689   1.275  -0.387   0.242  C14  YQM  13  
YQM  C15  C14  C  0  1  N  N  N  166.355  224.650  250.985   0.039  -1.132   0.527  C15  YQM  14  
YQM  C16  C15  C  0  1  N  N  N  166.286  223.575  251.909  -1.173  -0.467   0.519  C16  YQM  15  
YQM  C17  C16  C  0  1  N  N  N  165.228  223.324  252.988  -2.340  -1.195   0.730  C17  YQM  16  
YQM  C19  C17  C  0  1  N  N  R  165.491  222.221  254.193  -3.707  -0.581   0.763  C19  YQM  17  
YQM  C20  C18  C  0  1  N  N  N  166.480  222.766  255.389  -4.531  -1.117  -0.368  C20  YQM  18  
YQM  C21  C19  C  0  1  N  N  N  166.984  221.847  256.329  -5.450  -0.356  -1.043  C21  YQM  19  
YQM  C22  C20  C  0  1  N  N  N  166.686  220.364  256.086  -5.648   1.046  -0.683  C22  YQM  20  
YQM  C24  C21  C  0  1  N  N  N  167.611  222.232  257.745  -6.239  -0.953  -2.134  C24  YQM  21  
YQM  C32  C22  C  0  1  N  N  N  166.892  227.536  245.984   6.032  -0.290   0.003  C32  YQM  22  
YQM  C34  C23  C  0  1  N  N  N  166.849  228.562  244.789   7.371  -0.912   0.306  C34  YQM  23  
YQM  C36  C24  C  0  1  N  N  N  167.424  229.056  242.465   9.673  -1.034  -0.450  C36  YQM  24  
YQM  C37  C25  C  0  1  N  N  N  167.132  228.299  241.208  10.753  -0.029   0.001  C37  YQM  25  
YQM  C38  C26  C  0  1  N  N  N  166.055  227.290  241.609  10.150   1.340  -0.410  C38  YQM  26  
YQM  C39  C27  C  0  1  N  N  N  166.086  227.164  243.132   8.641   1.109  -0.147  C39  YQM  27  
YQM  F40  F1   F  0  1  N  N  N  169.954  222.626  248.270   2.261   2.826  -1.155  F40  YQM  28  
YQM  N02  N1   N  0  1  N  N  N  165.464  218.607  254.660  -5.841   1.387   1.706  N02  YQM  29  
YQM  N26  N2   N  0  1  N  N  N  167.881  223.540  258.237  -7.364  -1.640  -1.854  N26  YQM  30  
YQM  N31  N3   N  0  1  N  N  N  167.906  226.536  246.247   4.933  -0.701   0.665  N31  YQM  31  
YQM  N35  N4   N  0  1  N  N  N  167.247  227.981  243.519   8.400  -0.296  -0.542  N35  YQM  32  
YQM  O18  O1   O  0  1  N  N  N  164.138  223.848  253.116  -2.245  -2.396   0.897  O18  YQM  33  
YQM  O23  O2   O  0  1  N  N  N  166.587  219.561  257.005  -6.354   1.757  -1.368  O23  YQM  34  
YQM  O25  O3   O  0  1  N  N  N  167.904  221.324  258.518  -5.874  -0.826  -3.287  O25  YQM  35  
YQM  O27  O4   O  0  1  N  N  N  167.056  223.938  254.984  -4.362  -2.396  -0.735  O27  YQM  36  
YQM  O28  O5   O  0  1  N  N  N  164.252  221.964  254.792  -4.341  -1.000   1.974  O28  YQM  37  
YQM  O29  O6   O  0  1  N  N  N  165.698  225.842  251.178   0.088  -2.455   0.794  O29  YQM  38  
YQM  O30  O7   O  0  1  N  N  N  166.208  226.608  248.662   2.612  -2.149   1.150  O30  YQM  39  
YQM  O33  O8   O  0  1  N  N  N  165.945  227.650  246.742   5.944   0.582  -0.836  O33  YQM  40  
YQM  H1   H1   H  0  1  N  N  N  164.114  219.709  255.880  -5.930   1.844   3.755  H1   YQM  41  
YQM  H2   H2   H  0  1  N  N  N  163.706  219.681  254.131  -4.314   1.409   3.149  H2   YQM  42  
YQM  H3   H3   H  0  1  N  N  N  163.428  218.222  255.142  -5.010   3.001   2.763  H3   YQM  43  
YQM  H4   H4   H  0  1  N  N  N  164.637  216.977  253.557  -7.634   1.464   0.614  H4   YQM  44  
YQM  H5   H5   H  0  1  N  N  N  165.122  218.393  252.564  -7.800   1.773   2.359  H5   YQM  45  
YQM  H6   H6   H  0  1  N  N  N  166.376  217.300  253.240  -7.099   3.019   1.297  H6   YQM  46  
YQM  H7   H7   H  0  1  N  N  N  167.443  219.352  254.292  -4.817   2.672   0.404  H7   YQM  47  
YQM  H8   H8   H  0  1  N  N  N  165.203  220.449  252.972  -3.294   1.229   1.770  H8   YQM  48  
YQM  H9   H9   H  0  1  N  N  N  167.483  220.256  252.156  -2.775   0.987  -1.193  H9   YQM  49  
YQM  H10  H10  H  0  1  N  N  N  168.013  221.568  253.263  -2.649   2.517  -0.288  H10  YQM  50  
YQM  H11  H11  H  0  1  N  N  N  166.304  221.785  250.745  -0.993   1.534   1.223  H11  YQM  51  
YQM  H12  H12  H  0  1  N  N  N  168.720  221.629  250.332  -0.434   1.041  -1.722  H12  YQM  52  
YQM  H13  H13  H  0  1  N  N  N  169.044  222.961  251.493  -0.095   2.516  -0.787  H13  YQM  53  
YQM  H14  H14  H  0  1  N  N  N  169.584  224.422  246.498   4.476   1.652  -0.437  H14  YQM  54  
YQM  H19  H19  H  0  1  N  N  N  167.528  229.396  245.020   7.619  -0.749   1.354  H19  YQM  55  
YQM  H20  H20  H  0  1  N  N  N  165.821  228.943  244.692   7.328  -1.982   0.105  H20  YQM  56  
YQM  H21  H21  H  0  1  N  N  N  168.450  229.453  242.465   9.934  -1.447  -1.425  H21  YQM  57  
YQM  H22  H22  H  0  1  N  N  N  166.712  229.882  242.611   9.583  -1.838   0.281  H22  YQM  58  
YQM  H23  H23  H  0  1  N  N  N  168.034  227.782  240.847  10.899  -0.078   1.080  H23  YQM  59  
YQM  H24  H24  H  0  1  N  N  N  166.759  228.975  240.425  11.691  -0.210  -0.524  H24  YQM  60  
YQM  H25  H25  H  0  1  N  N  N  165.067  227.646  241.282  10.537   2.142   0.219  H25  YQM  61  
YQM  H26  H26  H  0  1  N  N  N  166.265  226.314  241.147  10.335   1.548  -1.464  H26  YQM  62  
YQM  H27  H27  H  0  1  N  N  N  165.161  227.558  243.578   8.413   1.250   0.909  H27  YQM  63  
YQM  H28  H28  H  0  1  N  N  N  166.223  226.116  243.437   8.041   1.783  -0.759  H28  YQM  64  
YQM  H30  H30  H  0  1  N  N  N  168.278  223.660  259.147  -7.694  -1.680  -0.942  H30  YQM  65  
YQM  H31  H31  H  0  1  N  N  N  167.673  224.339  257.673  -7.844  -2.095  -2.563  H31  YQM  66  
YQM  H32  H32  H  0  1  N  N  N  168.655  226.488  245.587   5.011  -1.360   1.373  H32  YQM  67  
YQM  H34  H34  H  0  1  N  N  N  167.630  224.262  255.668  -4.849  -2.697  -1.513  H34  YQM  68  
YQM  H35  H35  H  0  1  N  N  N  163.601  222.561  254.443  -4.433  -1.959   2.057  H35  YQM  69  
YQM  H36  H36  H  0  1  N  N  N  165.178  225.793  251.971   0.390  -2.995   0.052  H36  YQM  70  
YQM  H37  H37  H  0  1  N  N  N  166.118  227.038  247.820   2.575  -2.139   2.116  H37  YQM  71  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YQM  C37  C38  SING  N  N   1  
YQM  C37  C36  SING  N  N   2  
YQM  C38  C39  SING  N  N   3  
YQM  C36  N35  SING  N  N   4  
YQM  C39  N35  SING  N  N   5  
YQM  N35  C34  SING  N  N   6  
YQM  C34  C32  SING  N  N   7  
YQM  C32  N31  SING  N  N   8  
YQM  C32  O33  DOUB  N  N   9  
YQM  N31  C12  SING  N  N  10  
YQM  C11  C12  DOUB  Y  N  11  
YQM  C11  C10  SING  Y  N  12  
YQM  C12  C13  SING  Y  N  13  
YQM  F40  C10  SING  N  N  14  
YQM  C10  C09  DOUB  Y  N  15  
YQM  C13  O30  SING  N  N  16  
YQM  C13  C14  DOUB  Y  N  17  
YQM  C09  C14  SING  Y  N  18  
YQM  C09  C08  SING  N  N  19  
YQM  C14  C15  SING  N  N  20  
YQM  C08  C07  SING  N  N  21  
YQM  C15  O29  SING  N  N  22  
YQM  C15  C16  DOUB  N  N  23  
YQM  C07  C16  SING  N  N  24  
YQM  C07  C06  SING  N  N  25  
YQM  C16  C17  SING  N  N  26  
YQM  C06  C05  SING  N  N  27  
YQM  C17  O18  DOUB  N  N  28  
YQM  C17  C19  SING  N  N  29  
YQM  C03  N02  SING  N  N  30  
YQM  C05  C19  SING  N  N  31  
YQM  C05  C04  SING  N  N  32  
YQM  C19  O28  SING  N  N  33  
YQM  C19  C20  SING  N  N  34  
YQM  C04  N02  SING  N  N  35  
YQM  C04  C22  SING  N  N  36  
YQM  N02  C01  SING  N  N  37  
YQM  O27  C20  SING  N  N  38  
YQM  C20  C21  DOUB  N  N  39  
YQM  C22  C21  SING  N  N  40  
YQM  C22  O23  DOUB  N  N  41  
YQM  C21  C24  SING  N  N  42  
YQM  C24  N26  SING  N  N  43  
YQM  C24  O25  DOUB  N  N  44  
YQM  C01  H1   SING  N  N  45  
YQM  C01  H2   SING  N  N  46  
YQM  C01  H3   SING  N  N  47  
YQM  C03  H4   SING  N  N  48  
YQM  C03  H5   SING  N  N  49  
YQM  C03  H6   SING  N  N  50  
YQM  C04  H7   SING  N  N  51  
YQM  C05  H8   SING  N  N  52  
YQM  C06  H9   SING  N  N  53  
YQM  C06  H10  SING  N  N  54  
YQM  C07  H11  SING  N  N  55  
YQM  C08  H12  SING  N  N  56  
YQM  C08  H13  SING  N  N  57  
YQM  C11  H14  SING  N  N  58  
YQM  C34  H19  SING  N  N  59  
YQM  C34  H20  SING  N  N  60  
YQM  C36  H21  SING  N  N  61  
YQM  C36  H22  SING  N  N  62  
YQM  C37  H23  SING  N  N  63  
YQM  C37  H24  SING  N  N  64  
YQM  C38  H25  SING  N  N  65  
YQM  C38  H26  SING  N  N  66  
YQM  C39  H27  SING  N  N  67  
YQM  C39  H28  SING  N  N  68  
YQM  N26  H30  SING  N  N  69  
YQM  N26  H31  SING  N  N  70  
YQM  N31  H32  SING  N  N  71  
YQM  O27  H34  SING  N  N  72  
YQM  O28  H35  SING  N  N  73  
YQM  O29  H36  SING  N  N  74  
YQM  O30  H37  SING  N  N  75  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YQM  SMILES            ACDLabs               12.01  "O=C(Nc1cc(F)c2CC3CC4C(N(C)C)C(=O)C(C(N)=O)=C(O)C4(O)C(=O)C3=C(O)c2c1O)CN1CCCC1"  
YQM  InChI             InChI                 1.03   "InChI=1S/C27H31FN4O8/c1-31(2)20-13-8-11-7-12-14(28)9-15(30-16(33)10-32-5-3-4-6-32)21(34)18(12)22(35)17(11)24(37)27(13,40)25(38)19(23(20)36)26(29)39/h9,11,13,20,34-35,38,40H,3-8,10H2,1-2H3,(H2,29,39)(H,30,33)/t11-,13-,20-,27-/m0/s1"  
YQM  InChIKey          InChI                 1.03   AKLMFDDQCHURPW-ISIOAQNYSA-N  
YQM  SMILES_CANONICAL  CACTVS                3.385  "CN(C)[C@H]1[C@@H]2C[C@@H]3Cc4c(F)cc(NC(=O)CN5CCCC5)c(O)c4C(=C3C(=O)[C@]2(O)C(=C(C(N)=O)C1=O)O)O"  
YQM  SMILES            CACTVS                3.385  "CN(C)[CH]1[CH]2C[CH]3Cc4c(F)cc(NC(=O)CN5CCCC5)c(O)c4C(=C3C(=O)[C]2(O)C(=C(C(N)=O)C1=O)O)O"  
YQM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN(C)[C@H]1[C@@H]2C[C@@H]3Cc4c(cc(c(c4C(=C3C(=O)[C@@]2(C(=C(C1=O)C(=O)N)O)O)O)O)NC(=O)CN5CCCC5)F"  
YQM  SMILES            "OpenEye OEToolkits"  2.0.7  "CN(C)C1C2CC3Cc4c(cc(c(c4C(=C3C(=O)C2(C(=C(C1=O)C(=O)N)O)O)O)O)NC(=O)CN5CCCC5)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YQM  "SYSTEMATIC NAME"  ACDLabs               12.01  "(4S,4aS,5aR,12aR)-4-(dimethylamino)-7-fluoro-1,10,11,12a-tetrahydroxy-3,12-dioxo-9-[2-(pyrrolidin-1-yl)acetamido]-3,4,4a,5,5a,6,12,12a-octahydrotetracene-2-carboxamide"  
YQM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(4~{S},4~{a}~{S},5~{a}~{R},12~{a}~{R})-4-(dimethylamino)-7-fluoranyl-1,10,11,12~{a}-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-9-(2-pyrrolidin-1-ylethanoylamino)-4~{a},5,5~{a},6-tetrahydro-4~{H}-tetracene-2-carboxamide"  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     YQM
_pdbx_chem_comp_synonyms.name        "(4S,4aS,5aR,12aR)-4-(dimethylamino)-7-fluoro-1,10,11,12a-tetrahydroxy-3,12-dioxo-9-[2-(pyrrolidin-1-yl)acetamido]-3,4,4a,5,5a,6,12,12a-octahydrotetracene-2-carboxamide"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YQM  "Create component"  2021-03-23  RCSB  
YQM  "Initial release"   2021-05-19  RCSB  
##
