data_YJM
#

_chem_comp.id                                   YJM
_chem_comp.name                                 "2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H13 N O11 S2"
_chem_comp.mon_nstd_parent_comp_id              PA1
_chem_comp.pdbx_synonyms                        
;2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucose; 2-deoxy-6-O-sulfo-2-(sulfoamino)-D-glucose;
2-deoxy-6-O-sulfo-2-(sulfoamino)-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-08-25
_chem_comp.pdbx_modified_date                   2020-08-11
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  OBS
_chem_comp.pdbx_replaced_by                     SGN
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       339.298
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YJM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5G6U
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  YJM  "2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucose"  PDB  ?  
2  YJM  "2-deoxy-6-O-sulfo-2-(sulfoamino)-D-glucose"        PDB  ?  
3  YJM  "2-deoxy-6-O-sulfo-2-(sulfoamino)-glucose"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YJM  C1    C01   C  0  1  N  N  S  31.792   9.967  58.651   0.931   0.894  -0.539  C1    YJM   1  
YJM  C2    C02   C  0  1  N  N  R  32.741   8.839  58.436   1.834  -0.213   0.011  C2    YJM   2  
YJM  C3    C03   C  0  1  N  N  R  33.949   9.343  57.715   1.241  -1.576  -0.360  C3    YJM   3  
YJM  C4    C04   C  0  1  N  N  S  33.574   9.761  56.341  -0.187  -1.665   0.187  C4    YJM   4  
YJM  C5    C05   C  0  1  N  N  R  32.424  10.825  56.465  -1.012  -0.502  -0.371  C5    YJM   5  
YJM  C6    C06   C  0  1  N  N  N  31.895  11.373  55.073  -2.424  -0.550   0.218  C6    YJM   6  
YJM  N2    N07   N  0  1  N  N  N  33.133   8.284  59.702   3.173  -0.087  -0.570  N2    YJM   7  
YJM  O3    O08   O  0  1  N  N  N  34.945   8.390  57.761   2.037  -2.615   0.213  O3    YJM   8  
YJM  O4    O09   O  0  1  N  N  N  34.593  10.350  55.660  -0.776  -2.904  -0.215  O4    YJM   9  
YJM  O5    O10   O  0  1  N  N  N  31.376  10.441  57.429  -0.389   0.735  -0.016  O5    YJM  10  
YJM  O6    O11   O  0  1  N  N  N  31.482  12.671  55.263  -3.227   0.464  -0.389  O6    YJM  11  
YJM  S12   S12   S  0  1  N  N  N  32.516   6.783  59.882   4.355   0.737   0.246  S12   YJM  12  
YJM  O13   O13   O  0  1  N  N  N  33.095   5.894  58.903   5.527   0.651  -0.552  O13   YJM  13  
YJM  O14   O14   O  0  1  N  N  N  31.086   6.834  59.683   3.778   1.972   0.649  O14   YJM  14  
YJM  O15   O15   O  0  1  N  N  N  32.825   6.288  61.230   4.646  -0.039   1.522  O15   YJM  15  
YJM  S16   S16   S  0  1  N  N  N  32.257  13.788  54.714  -4.659   0.509   0.124  S16   YJM  16  
YJM  O17   O17   O  0  1  N  N  N  31.600  15.016  55.095  -5.061  -0.841   0.309  O17   YJM  17  
YJM  O18   O18   O  0  1  N  N  N  33.597  13.757  55.248  -4.623   1.140   1.508  O18   YJM  18  
YJM  O19   O19   O  0  1  N  N  N  32.299  13.682  53.251  -5.357   1.420  -0.715  O19   YJM  19  
YJM  O1    O20   O  0  1  N  Y  N  32.419  10.971  59.353   0.891   0.812  -1.966  O1    YJM  20  
YJM  H1    H01   H  0  1  N  N  N  30.930   9.591  59.222   1.325   1.866  -0.242  H1    YJM  21  
YJM  H2    H02   H  0  1  N  N  N  32.252   8.067  57.824   1.897  -0.125   1.096  H2    YJM  22  
YJM  H3    H03   H  0  1  N  N  N  34.295  10.241  58.248   1.225  -1.684  -1.444  H3    YJM  23  
YJM  H4    H04   H  0  1  N  N  N  33.180   8.893  55.792  -0.165  -1.608   1.275  H4    YJM  24  
YJM  H5    H05   H  0  1  N  N  N  32.918  11.697  56.919  -1.067  -0.583  -1.456  H5    YJM  25  
YJM  H61   H06   H  0  1  N  N  N  32.703  11.343  54.327  -2.865  -1.527   0.024  H61   YJM  26  
YJM  H62   H06A  H  0  1  N  N  N  31.051  10.759  54.725  -2.375  -0.379   1.293  H62   YJM  27  
YJM  HN21  HN07  H  0  0  N  N  N  34.131   8.237  59.746   3.367  -0.486  -1.432  HN21  YJM  28  
YJM  HO3   HO08  H  0  1  N  Y  N  35.713   8.711  57.302   1.719  -3.507   0.018  HO3   YJM  29  
YJM  HO4   HO09  H  0  1  N  Y  N  34.295  10.595  54.792  -1.683  -3.028   0.096  HO4   YJM  30  
YJM  HO15  HO15  H  0  0  N  N  N  33.338   5.491  61.165   5.329   0.361   2.078  HO15  YJM  31  
YJM  HO18  HO18  H  0  0  N  N  N  33.762  14.554  55.738  -5.490   1.217   1.928  HO18  YJM  32  
YJM  HO1   HO20  H  0  1  N  Y  N  32.704  10.638  60.196   0.336   1.485  -2.383  HO1   YJM  33  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YJM  O5   C1    SING  N  N   1  
YJM  C2   C1    SING  N  N   2  
YJM  C1   O1    SING  N  N   3  
YJM  C1   H1    SING  N  N   4  
YJM  C3   C2    SING  N  N   5  
YJM  C2   N2    SING  N  N   6  
YJM  C2   H2    SING  N  N   7  
YJM  C4   C3    SING  N  N   8  
YJM  C3   O3    SING  N  N   9  
YJM  C3   H3    SING  N  N  10  
YJM  O4   C4    SING  N  N  11  
YJM  C4   C5    SING  N  N  12  
YJM  C4   H4    SING  N  N  13  
YJM  C6   C5    SING  N  N  14  
YJM  C5   O5    SING  N  N  15  
YJM  C5   H5    SING  N  N  16  
YJM  C6   O6    SING  N  N  17  
YJM  C6   H61   SING  N  N  18  
YJM  C6   H62   SING  N  N  19  
YJM  N2   S12   SING  N  N  20  
YJM  N2   HN21  SING  N  N  21  
YJM  O3   HO3   SING  N  N  22  
YJM  O4   HO4   SING  N  N  23  
YJM  S16  O6    SING  N  N  24  
YJM  O13  S12   DOUB  N  N  25  
YJM  O14  S12   DOUB  N  N  26  
YJM  S12  O15   SING  N  N  27  
YJM  O15  HO15  SING  N  N  28  
YJM  O19  S16   DOUB  N  N  29  
YJM  S16  O17   DOUB  N  N  30  
YJM  S16  O18   SING  N  N  31  
YJM  O18  HO18  SING  N  N  32  
YJM  O1   HO1   SING  N  N  33  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YJM  SMILES            ACDLabs               12.01  "C1(O)C(NS(O)(=O)=O)C(O)C(C(O1)COS(=O)(O)=O)O"  
YJM  InChI             InChI                 1.03   "InChI=1S/C6H13NO11S2/c8-4-2(1-17-20(14,15)16)18-6(10)3(5(4)9)7-19(11,12)13/h2-10H,1H2,(H,11,12,13)(H,14,15,16)/t2-,3-,4-,5-,6+/m1/s1"  
YJM  InChIKey          InChI                 1.03   DQTRACMFIGDHSN-UKFBFLRUSA-N  
YJM  SMILES_CANONICAL  CACTVS                3.385  "O[C@H]1O[C@H](CO[S](O)(=O)=O)[C@@H](O)[C@H](O)[C@H]1N[S](O)(=O)=O"  
YJM  SMILES            CACTVS                3.385  "O[CH]1O[CH](CO[S](O)(=O)=O)[CH](O)[CH](O)[CH]1N[S](O)(=O)=O"  
YJM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)NS(=O)(=O)O)O)O)OS(=O)(=O)O"  
YJM  SMILES            "OpenEye OEToolkits"  1.7.6  "C(C1C(C(C(C(O1)O)NS(=O)(=O)O)O)O)OS(=O)(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YJM  "SYSTEMATIC NAME"                      ACDLabs               12.01  "2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose"  
YJM  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.7.6  "[(2S,3R,4R,5S,6R)-2,4,5-tris(oxidanyl)-6-(sulfooxymethyl)oxan-3-yl]sulfamic acid"  
YJM  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DGlcpNS[6S]a  
YJM  "COMMON NAME"                          GMML                  1.0    N-sulfo-6-sulfo-a-D-glucopyranose  
#
_pdbx_chem_comp_related.comp_id            YJM
_pdbx_chem_comp_related.related_comp_id    PA1
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  YJM  C1    PA1  C1    "Carbohydrate core"  
 2  YJM  C2    PA1  C2    "Carbohydrate core"  
 3  YJM  C3    PA1  C3    "Carbohydrate core"  
 4  YJM  C4    PA1  C4    "Carbohydrate core"  
 5  YJM  C5    PA1  C5    "Carbohydrate core"  
 6  YJM  C6    PA1  C6    "Carbohydrate core"  
 7  YJM  N2    PA1  N2    "Carbohydrate core"  
 8  YJM  O3    PA1  O3    "Carbohydrate core"  
 9  YJM  O4    PA1  O4    "Carbohydrate core"  
10  YJM  O5    PA1  O5    "Carbohydrate core"  
11  YJM  O6    PA1  O6    "Carbohydrate core"  
12  YJM  O1    PA1  O1    "Carbohydrate core"  
13  YJM  H1    PA1  H1    "Carbohydrate core"  
14  YJM  H2    PA1  H2    "Carbohydrate core"  
15  YJM  H3    PA1  H3    "Carbohydrate core"  
16  YJM  H4    PA1  H4    "Carbohydrate core"  
17  YJM  H5    PA1  H5    "Carbohydrate core"  
18  YJM  H61   PA1  H61   "Carbohydrate core"  
19  YJM  H62   PA1  H62   "Carbohydrate core"  
20  YJM  HN21  PA1  HN21  "Carbohydrate core"  
21  YJM  HO3   PA1  HO3   "Carbohydrate core"  
22  YJM  HO4   PA1  HO4   "Carbohydrate core"  
23  YJM  HO1   PA1  HO1   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
YJM  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
YJM  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
YJM  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
YJM  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YJM  "Create component"          2016-08-25  EBI   
YJM  "Initial release"           2018-02-21  RCSB  
YJM  "Other modification"        2020-07-03  RCSB  
YJM  "Modify parent residue"     2020-07-17  RCSB  
YJM  "Modify synonyms"           2020-07-17  RCSB  
YJM  "Modify internal type"      2020-07-17  RCSB  
YJM  "Modify linking type"       2020-07-17  RCSB  
YJM  "Modify atom id"            2020-07-17  RCSB  
YJM  "Modify component atom id"  2020-07-17  RCSB  
YJM  "Modify leaving atom flag"  2020-07-17  RCSB  
YJM  "Obsolete component"        2020-08-11  RCSB  
##
