data_Y5M
#

_chem_comp.id                                   Y5M
_chem_comp.name                                 "7-methoxy-4-(2-methyl-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl)-3,4-dihydroquinoxalin-2(1H)-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H18 N4 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-05-20
_chem_comp.pdbx_modified_date                   2021-09-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       310.350
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y5M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6X1F
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y5M  C01  C1   C  0  1  N  N  N  17.109  -67.164  -37.167  -1.504   3.835   0.947  C01  Y5M   1  
Y5M  C02  C2   C  0  1  Y  N  N  16.481  -67.089  -38.552  -1.882   2.432   0.546  C02  Y5M   2  
Y5M  C04  C3   C  0  1  Y  N  N  14.605  -67.075  -39.896  -3.532   0.910   0.037  C04  Y5M   3  
Y5M  C05  C4   C  0  1  Y  N  N  15.380  -66.955  -41.041  -2.568  -0.055  -0.167  C05  Y5M   4  
Y5M  C06  C5   C  0  1  N  N  N  14.448  -66.907  -42.281  -3.219  -1.361  -0.557  C06  Y5M   5  
Y5M  C07  C6   C  0  1  N  N  N  13.038  -67.197  -41.808  -4.654  -0.983  -0.986  C07  Y5M   6  
Y5M  C08  C7   C  0  1  N  N  N  13.119  -67.109  -40.301  -4.904   0.321  -0.204  C08  Y5M   7  
Y5M  C09  C8   C  0  1  Y  N  N  16.777  -66.898  -40.852  -1.227   0.295   0.002  C09  Y5M   8  
Y5M  C11  C9   C  0  1  Y  N  N  17.495  -65.957  -43.118   1.130  -0.268  -0.175  C11  Y5M   9  
Y5M  C12  C10  C  0  1  Y  N  N  16.804  -64.714  -43.061   1.525   1.000  -0.563  C12  Y5M  10  
Y5M  C13  C11  C  0  1  Y  N  N  16.639  -63.951  -44.219   2.866   1.339  -0.542  C13  Y5M  11  
Y5M  C14  C12  C  0  1  Y  N  N  17.161  -64.415  -45.436   3.813   0.410  -0.134  C14  Y5M  12  
Y5M  C16  C13  C  0  1  N  N  N  16.626  -62.359  -46.388   5.464   2.074  -0.533  C16  Y5M  13  
Y5M  C17  C14  C  0  1  Y  N  N  17.830  -65.630  -45.480   3.421  -0.861   0.257  C17  Y5M  14  
Y5M  C18  C15  C  0  1  Y  N  N  17.997  -66.402  -44.313   2.079  -1.205   0.238  C18  Y5M  15  
Y5M  C20  C16  C  0  1  N  N  N  19.218  -68.322  -43.204   0.417  -2.914   0.365  C20  Y5M  16  
Y5M  C21  C17  C  0  1  N  N  N  18.906  -67.539  -41.899  -0.543  -2.059  -0.421  C21  Y5M  17  
Y5M  N03  N1   N  0  1  Y  N  N  15.168  -67.139  -38.676  -3.155   2.133   0.389  N03  Y5M  18  
Y5M  N10  N2   N  0  1  N  N  N  17.701  -66.799  -41.959  -0.224  -0.642  -0.191  N10  Y5M  19  
Y5M  N19  N3   N  0  1  N  N  N  18.720  -67.691  -44.403   1.661  -2.479   0.639  N19  Y5M  20  
Y5M  N23  N4   N  0  1  Y  N  N  17.267  -66.978  -39.618  -0.929   1.542   0.357  N23  Y5M  21  
Y5M  O15  O1   O  0  1  N  N  N  17.017  -63.678  -46.612   5.130   0.748  -0.117  O15  Y5M  22  
Y5M  O22  O2   O  0  1  N  N  N  19.798  -69.350  -43.221   0.062  -4.005   0.759  O22  Y5M  23  
Y5M  H1   H1   H  0  1  N  N  N  18.204  -67.111  -37.257  -1.472   3.905   2.035  H1   Y5M  24  
Y5M  H2   H2   H  0  1  N  N  N  16.751  -66.322  -36.556  -0.523   4.078   0.538  H2   Y5M  25  
Y5M  H3   H3   H  0  1  N  N  N  16.826  -68.112  -36.687  -2.243   4.535   0.559  H3   Y5M  26  
Y5M  H4   H4   H  0  1  N  N  N  14.761  -67.665  -43.014  -2.686  -1.823  -1.387  H4   Y5M  27  
Y5M  H5   H5   H  0  1  N  N  N  14.491  -65.910  -42.743  -3.246  -2.035   0.299  H5   Y5M  28  
Y5M  H6   H6   H  0  1  N  N  N  12.334  -66.450  -42.204  -4.702  -0.798  -2.059  H6   Y5M  29  
Y5M  H7   H7   H  0  1  N  N  N  12.721  -68.202  -42.122  -5.363  -1.757  -0.693  H7   Y5M  30  
Y5M  H8   H8   H  0  1  N  N  N  12.618  -66.193  -39.955  -5.387   0.105   0.748  H8   Y5M  31  
Y5M  H9   H9   H  0  1  N  N  N  12.631  -67.986  -39.851  -5.516   1.004  -0.793  H9   Y5M  32  
Y5M  H10  H10  H  0  1  N  N  N  16.407  -64.360  -42.121   0.789   1.722  -0.882  H10  Y5M  33  
Y5M  H11  H11  H  0  1  N  N  N  16.112  -63.009  -44.178   3.177   2.328  -0.844  H11  Y5M  34  
Y5M  H12  H12  H  0  1  N  N  N  16.531  -61.836  -47.351   6.544   2.212  -0.472  H12  Y5M  35  
Y5M  H13  H13  H  0  1  N  N  N  15.657  -62.347  -45.867   5.136   2.227  -1.561  H13  Y5M  36  
Y5M  H14  H14  H  0  1  N  N  N  17.381  -61.853  -45.769   4.969   2.795   0.118  H14  Y5M  37  
Y5M  H15  H15  H  0  1  N  N  N  18.227  -65.988  -46.419   4.160  -1.582   0.573  H15  Y5M  38  
Y5M  H16  H16  H  0  1  N  N  N  18.832  -68.259  -41.070  -0.446  -2.282  -1.483  H16  Y5M  39  
Y5M  H17  H17  H  0  1  N  N  N  19.734  -66.841  -41.705  -1.564  -2.264  -0.097  H17  Y5M  40  
Y5M  H18  H18  H  0  1  N  N  N  18.863  -68.124  -45.293   2.275  -3.056   1.120  H18  Y5M  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y5M  O15  C16  SING  N  N   1  
Y5M  O15  C14  SING  N  N   2  
Y5M  C17  C14  DOUB  Y  N   3  
Y5M  C17  C18  SING  Y  N   4  
Y5M  C14  C13  SING  Y  N   5  
Y5M  N19  C18  SING  N  N   6  
Y5M  N19  C20  SING  N  N   7  
Y5M  C18  C11  DOUB  Y  N   8  
Y5M  C13  C12  DOUB  Y  N   9  
Y5M  O22  C20  DOUB  N  N  10  
Y5M  C20  C21  SING  N  N  11  
Y5M  C11  C12  SING  Y  N  12  
Y5M  C11  N10  SING  N  N  13  
Y5M  C06  C07  SING  N  N  14  
Y5M  C06  C05  SING  N  N  15  
Y5M  N10  C21  SING  N  N  16  
Y5M  N10  C09  SING  N  N  17  
Y5M  C07  C08  SING  N  N  18  
Y5M  C05  C09  DOUB  Y  N  19  
Y5M  C05  C04  SING  Y  N  20  
Y5M  C09  N23  SING  Y  N  21  
Y5M  C08  C04  SING  N  N  22  
Y5M  C04  N03  DOUB  Y  N  23  
Y5M  N23  C02  DOUB  Y  N  24  
Y5M  N03  C02  SING  Y  N  25  
Y5M  C02  C01  SING  N  N  26  
Y5M  C01  H1   SING  N  N  27  
Y5M  C01  H2   SING  N  N  28  
Y5M  C01  H3   SING  N  N  29  
Y5M  C06  H4   SING  N  N  30  
Y5M  C06  H5   SING  N  N  31  
Y5M  C07  H6   SING  N  N  32  
Y5M  C07  H7   SING  N  N  33  
Y5M  C08  H8   SING  N  N  34  
Y5M  C08  H9   SING  N  N  35  
Y5M  C12  H10  SING  N  N  36  
Y5M  C13  H11  SING  N  N  37  
Y5M  C16  H12  SING  N  N  38  
Y5M  C16  H13  SING  N  N  39  
Y5M  C16  H14  SING  N  N  40  
Y5M  C17  H15  SING  N  N  41  
Y5M  C21  H16  SING  N  N  42  
Y5M  C21  H17  SING  N  N  43  
Y5M  N19  H18  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y5M  SMILES            ACDLabs               12.01  "Cc1nc4c(c(n1)N3c2ccc(cc2NC(C3)=O)OC)CCC4"  
Y5M  InChI             InChI                 1.03   "InChI=1S/C17H18N4O2/c1-10-18-13-5-3-4-12(13)17(19-10)21-9-16(22)20-14-8-11(23-2)6-7-15(14)21/h6-8H,3-5,9H2,1-2H3,(H,20,22)"  
Y5M  InChIKey          InChI                 1.03   UEPKZTFWZFQXML-UHFFFAOYSA-N  
Y5M  SMILES_CANONICAL  CACTVS                3.385  "COc1ccc2N(CC(=O)Nc2c1)c3nc(C)nc4CCCc34"  
Y5M  SMILES            CACTVS                3.385  "COc1ccc2N(CC(=O)Nc2c1)c3nc(C)nc4CCCc34"  
Y5M  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1nc2c(c(n1)N3CC(=O)Nc4c3ccc(c4)OC)CCC2"  
Y5M  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1nc2c(c(n1)N3CC(=O)Nc4c3ccc(c4)OC)CCC2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y5M  "SYSTEMATIC NAME"  ACDLabs               12.01  "7-methoxy-4-(2-methyl-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl)-3,4-dihydroquinoxalin-2(1H)-one"  
Y5M  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "7-methoxy-4-(2-methyl-6,7-dihydro-5~{H}-cyclopenta[d]pyrimidin-4-yl)-1,3-dihydroquinoxalin-2-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y5M  "Create component"  2020-05-20  RCSB  
Y5M  "Initial release"   2021-09-22  RCSB  
##
