data_XSM
#

_chem_comp.id                                   XSM
_chem_comp.name                                 "(2R)-4-borono-2-{[(1H-imidazol-4-yl)methyl]amino}butanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C8 H14 B N3 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-01-10
_chem_comp.pdbx_modified_date                   2022-01-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       227.025
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XSM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LA5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XSM  CAO  C1   C  0  1  Y  N  N  -22.241  -28.514   -6.121   3.742  -0.165   0.435  CAO  XSM   1  
XSM  NAP  N1   N  0  1  Y  N  N  -22.347  -29.677   -5.465   4.598   0.875   0.681  NAP  XSM   2  
XSM  CAQ  C2   C  0  1  Y  N  N  -23.560  -29.742   -4.920   4.100   1.960   0.049  CAQ  XSM   3  
XSM  NAR  N2   N  0  1  Y  N  N  -24.222  -28.623   -5.230   2.996   1.620  -0.558  NAR  XSM   4  
XSM  CAN  C3   C  0  1  Y  N  N  -23.402  -27.879   -5.970   2.751   0.320  -0.338  CAN  XSM   5  
XSM  CAM  C4   C  0  1  N  N  N  -23.726  -26.499   -6.561   1.574  -0.461  -0.862  CAM  XSM   6  
XSM  NAF  N3   N  0  1  N  N  N  -24.701  -26.555   -7.674   0.430  -0.289   0.042  NAF  XSM   7  
XSM  CAD  C5   C  0  1  N  N  R  -24.511  -25.481   -8.672  -0.739  -1.038  -0.439  CAD  XSM   8  
XSM  CAB  C6   C  0  1  N  N  N  -24.717  -24.062   -8.032  -0.655  -2.463   0.044  CAB  XSM   9  
XSM  OAA  O1   O  0  1  N  N  N  -24.234  -23.854   -6.895  -1.621  -3.338  -0.277  OAA  XSM  10  
XSM  OAC  O2   O  0  1  N  N  N  -25.320  -23.206   -8.707   0.282  -2.818   0.719  OAC  XSM  11  
XSM  CAG  C7   C  0  1  N  N  N  -23.083  -25.556   -9.259  -2.016  -0.392   0.100  CAG  XSM  12  
XSM  CAH  C8   C  0  1  N  N  N  -22.714  -26.984   -9.781  -2.165   1.012  -0.490  CAH  XSM  13  
XSM  BAI  B1   B  0  1  N  N  N  -21.722  -27.080  -10.870  -3.476   1.676   0.062  BAI  XSM  14  
XSM  OAL  O3   O  0  1  N  N  N  -20.481  -26.585  -10.482  -3.548   3.086   0.217  OAL  XSM  15  
XSM  OAK  O4   O  0  1  N  N  N  -21.630  -28.352  -11.402  -4.591   0.866   0.407  OAK  XSM  16  
XSM  H1   H1   H  0  1  N  N  N  -21.380  -28.159   -6.667   3.844  -1.180   0.789  H1   XSM  17  
XSM  H2   H2   H  0  1  N  N  N  -21.636  -30.377   -5.396   5.410   0.840   1.210  H2   XSM  18  
XSM  H3   H3   H  0  1  N  N  N  -23.944  -30.560   -4.328   4.542   2.945   0.046  H3   XSM  19  
XSM  H5   H5   H  0  1  N  N  N  -22.794  -26.051   -6.935   1.311  -0.098  -1.856  H5   XSM  20  
XSM  H6   H6   H  0  1  N  N  N  -24.142  -25.866   -5.763   1.836  -1.518  -0.919  H6   XSM  21  
XSM  H7   H7   H  0  1  N  N  N  -25.622  -26.475   -7.293   0.208   0.688   0.162  H7   XSM  22  
XSM  H9   H9   H  0  1  N  N  N  -25.237  -25.603   -9.490  -0.756  -1.024  -1.529  H9   XSM  23  
XSM  H10  H10  H  0  1  N  N  N  -24.401  -22.954   -6.639  -1.524  -4.241   0.056  H10  XSM  24  
XSM  H11  H11  H  0  1  N  N  N  -22.366  -25.273   -8.475  -2.877  -0.998  -0.183  H11  XSM  25  
XSM  H12  H12  H  0  1  N  N  N  -23.010  -24.846  -10.096  -1.960  -0.325   1.186  H12  XSM  26  
XSM  H13  H13  H  0  1  N  N  N  -23.642  -27.453  -10.139  -1.304   1.618  -0.208  H13  XSM  27  
XSM  H14  H14  H  0  1  N  N  N  -22.321  -27.555   -8.927  -2.222   0.946  -1.577  H14  XSM  28  
XSM  H15  H15  H  0  1  N  N  N  -20.586  -25.712  -10.123  -4.394   3.401   0.564  H15  XSM  29  
XSM  H16  H16  H  0  1  N  N  N  -22.495  -28.654  -11.654  -4.448  -0.080   0.268  H16  XSM  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XSM  OAK  BAI  SING  N  N   1  
XSM  BAI  OAL  SING  N  N   2  
XSM  BAI  CAH  SING  N  N   3  
XSM  CAH  CAG  SING  N  N   4  
XSM  CAG  CAD  SING  N  N   5  
XSM  OAC  CAB  DOUB  N  N   6  
XSM  CAD  CAB  SING  N  N   7  
XSM  CAD  NAF  SING  N  N   8  
XSM  CAB  OAA  SING  N  N   9  
XSM  NAF  CAM  SING  N  N  10  
XSM  CAM  CAN  SING  N  N  11  
XSM  CAO  CAN  DOUB  Y  N  12  
XSM  CAO  NAP  SING  Y  N  13  
XSM  CAN  NAR  SING  Y  N  14  
XSM  NAP  CAQ  SING  Y  N  15  
XSM  NAR  CAQ  DOUB  Y  N  16  
XSM  CAO  H1   SING  N  N  17  
XSM  NAP  H2   SING  N  N  18  
XSM  CAQ  H3   SING  N  N  19  
XSM  CAM  H5   SING  N  N  20  
XSM  CAM  H6   SING  N  N  21  
XSM  NAF  H7   SING  N  N  22  
XSM  CAD  H9   SING  N  N  23  
XSM  OAA  H10  SING  N  N  24  
XSM  CAG  H11  SING  N  N  25  
XSM  CAG  H12  SING  N  N  26  
XSM  CAH  H13  SING  N  N  27  
XSM  CAH  H14  SING  N  N  28  
XSM  OAL  H15  SING  N  N  29  
XSM  OAK  H16  SING  N  N  30  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XSM  SMILES            ACDLabs               12.01  "c1c(ncn1)CNC(C(O)=O)CCB(O)O"  
XSM  InChI             InChI                 1.03   "InChI=1S/C8H14BN3O4/c13-8(14)7(1-2-9(15)16)11-4-6-3-10-5-12-6/h3,5,7,11,15-16H,1-2,4H2,(H,10,12)(H,13,14)/t7-/m1/s1"  
XSM  InChIKey          InChI                 1.03   JBISBMUZBNLAPG-SSDOTTSWSA-N  
XSM  SMILES_CANONICAL  CACTVS                3.385  "OB(O)CC[C@@H](NCc1c[nH]cn1)C(O)=O"  
XSM  SMILES            CACTVS                3.385  "OB(O)CC[CH](NCc1c[nH]cn1)C(O)=O"  
XSM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "B(CC[C@H](C(=O)O)NCc1c[nH]cn1)(O)O"  
XSM  SMILES            "OpenEye OEToolkits"  2.0.7  "B(CCC(C(=O)O)NCc1c[nH]cn1)(O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XSM  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R)-4-borono-2-{[(1H-imidazol-4-yl)methyl]amino}butanoic acid"  
XSM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R})-4-(dihydroxyboranyl)-2-(1~{H}-imidazol-4-ylmethylamino)butanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XSM  "Create component"  2021-01-10  RCSB  
XSM  "Initial release"   2022-01-12  RCSB  
##
