data_VZM
#

_chem_comp.id                                   VZM
_chem_comp.name                                 "N-(6-methoxypyridin-3-yl)-N'-thiophen-2-ylurea"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H11 N3 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-24
_chem_comp.pdbx_modified_date                   2020-11-06
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       249.289
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VZM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5RQ1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VZM  N1   N1   N  0  1  N  N  N   -8.080  15.021   4.762  -2.048   1.276  -0.184  N1   VZM   1  
VZM  C4   C1   C  0  1  Y  N  N   -6.168  14.823   1.617   1.528   0.745  -0.174  C4   VZM   2  
VZM  C5   C2   C  0  1  N  N  N   -7.931  15.079   3.369  -0.849   0.671  -0.063  C5   VZM   3  
VZM  C6   C3   C  0  1  Y  N  N   -9.278  15.063   5.485  -3.223   0.530  -0.054  C6   VZM   4  
VZM  C7   C4   C  0  1  Y  N  N   -9.358  15.215   6.872  -4.466   1.023  -0.149  C7   VZM   5  
VZM  C8   C5   C  0  1  Y  N  N  -10.738  15.187   7.300  -5.475   0.088   0.015  C8   VZM   6  
VZM  C10  C6   C  0  1  Y  N  N   -4.813  14.904   1.299   2.641   1.379   0.358  C10  VZM   7  
VZM  O1   O1   O  0  1  N  N  N   -8.898  15.210   2.616  -0.790  -0.523   0.159  O1   VZM   8  
VZM  S    S1   S  0  1  Y  N  N  -10.862  14.902   4.754  -3.299  -1.200   0.252  S    VZM   9  
VZM  C9   C7   C  0  1  Y  N  N  -11.625  15.030   6.285  -5.057  -1.157   0.242  C9   VZM  10  
VZM  N    N2   N  0  1  N  N  N   -6.631  14.977   2.939   0.284   1.390  -0.189  N    VZM  11  
VZM  C3   C8   C  0  1  Y  N  N   -7.068  14.726   0.569   1.664  -0.538  -0.699  C3   VZM  12  
VZM  C2   C9   C  0  1  Y  N  N   -6.615  14.772  -0.730   2.911  -1.136  -0.663  C2   VZM  13  
VZM  N2   N3   N  0  1  Y  N  N   -4.342  14.918   0.047   3.816   0.778   0.375  N2   VZM  14  
VZM  C1   C10  C  0  1  Y  N  N   -5.239  14.857  -0.928   3.979  -0.442  -0.110  C1   VZM  15  
VZM  O    O2   O  0  1  N  N  N   -4.872  14.874  -2.222   5.207  -1.020  -0.070  O    VZM  16  
VZM  C    C11  C  0  1  N  N  N   -3.480  14.926  -2.529   6.265  -0.256   0.512  C    VZM  17  
VZM  H1   H1   H  0  1  N  N  N   -7.239  14.941   5.297  -2.095   2.229  -0.358  H1   VZM  18  
VZM  H2   H2   H  0  1  N  N  N   -8.510  15.336   7.530  -4.666   2.067  -0.339  H2   VZM  19  
VZM  H3   H3   H  0  1  N  N  N  -11.036  15.282   8.334  -6.522   0.348  -0.037  H3   VZM  20  
VZM  H4   H4   H  0  1  N  N  N   -4.102  14.959   2.110   2.546   2.375   0.764  H4   VZM  21  
VZM  H5   H5   H  0  1  N  N  N  -12.695  14.990   6.426  -5.700  -2.011   0.393  H5   VZM  22  
VZM  H6   H6   H  0  1  N  N  N   -5.928  15.017   3.649   0.238   2.354  -0.289  H6   VZM  23  
VZM  H7   H7   H  0  1  N  N  N   -8.123  14.614   0.770   0.816  -1.054  -1.123  H7   VZM  24  
VZM  H8   H8   H  0  1  N  N  N   -7.301  14.743  -1.564   3.053  -2.130  -1.061  H8   VZM  25  
VZM  H9   H9   H  0  1  N  N  N   -3.345  14.934  -3.621   7.189  -0.833   0.480  H9   VZM  26  
VZM  H10  H10  H  0  1  N  N  N   -3.044  15.840  -2.099   6.395   0.670  -0.048  H10  VZM  27  
VZM  H11  H11  H  0  1  N  N  N   -2.978  14.045  -2.104   6.018  -0.023   1.547  H11  VZM  28  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VZM  C    O    SING  N  N   1  
VZM  O    C1   SING  N  N   2  
VZM  C1   C2   DOUB  Y  N   3  
VZM  C1   N2   SING  Y  N   4  
VZM  C2   C3   SING  Y  N   5  
VZM  N2   C10  DOUB  Y  N   6  
VZM  C3   C4   DOUB  Y  N   7  
VZM  C10  C4   SING  Y  N   8  
VZM  C4   N    SING  N  N   9  
VZM  O1   C5   DOUB  N  N  10  
VZM  N    C5   SING  N  N  11  
VZM  C5   N1   SING  N  N  12  
VZM  S    C6   SING  Y  N  13  
VZM  S    C9   SING  Y  N  14  
VZM  N1   C6   SING  N  N  15  
VZM  C6   C7   DOUB  Y  N  16  
VZM  C9   C8   DOUB  Y  N  17  
VZM  C7   C8   SING  Y  N  18  
VZM  N1   H1   SING  N  N  19  
VZM  C7   H2   SING  N  N  20  
VZM  C8   H3   SING  N  N  21  
VZM  C10  H4   SING  N  N  22  
VZM  C9   H5   SING  N  N  23  
VZM  N    H6   SING  N  N  24  
VZM  C3   H7   SING  N  N  25  
VZM  C2   H8   SING  N  N  26  
VZM  C    H9   SING  N  N  27  
VZM  C    H10  SING  N  N  28  
VZM  C    H11  SING  N  N  29  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VZM  SMILES            ACDLabs               12.01  "N(c1cccs1)C(=O)Nc2cnc(cc2)OC"  
VZM  InChI             InChI                 1.03   "InChI=1S/C11H11N3O2S/c1-16-9-5-4-8(7-12-9)13-11(15)14-10-3-2-6-17-10/h2-7H,1H3,(H2,13,14,15)"  
VZM  InChIKey          InChI                 1.03   QQTNSKDCQAMODS-UHFFFAOYSA-N  
VZM  SMILES_CANONICAL  CACTVS                3.385  "COc1ccc(NC(=O)Nc2sccc2)cn1"  
VZM  SMILES            CACTVS                3.385  "COc1ccc(NC(=O)Nc2sccc2)cn1"  
VZM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1ccc(cn1)NC(=O)Nc2cccs2"  
VZM  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1ccc(cn1)NC(=O)Nc2cccs2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VZM  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-(6-methoxypyridin-3-yl)-N'-thiophen-2-ylurea"  
VZM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "1-(6-methoxypyridin-3-yl)-3-thiophen-2-yl-urea"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VZM  "Create component"  2020-09-24  RCSB  
VZM  "Initial release"   2020-11-11  RCSB  
##
