data_VKM
#

_chem_comp.id                                   VKM
_chem_comp.name                                 "1-({3-[(3R,5R)-5-(4-fluorophenyl)oxolan-3-yl]-1,2,4-oxadiazol-5-yl}methyl)-7-methyl-1,7-dihydro-6H-purin-6-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H17 F N6 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-08-21
_chem_comp.pdbx_modified_date                   2021-03-26
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       396.375
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VKM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JUP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VKM  C1   C1   C  0  1  N  N  N  56.494  61.964  83.382   6.538   1.927  -1.720  C1   VKM   1  
VKM  C13  C2   C  0  1  Y  N  N  60.913  60.470  87.841   1.391   0.487   1.377  C13  VKM   2  
VKM  C15  C3   C  0  1  Y  N  N  62.478  61.700  88.407  -0.491  -0.068   0.585  C15  VKM   3  
VKM  C18  C4   C  0  1  N  N  R  63.153  62.949  88.879  -1.755  -0.827   0.270  C18  VKM   4  
VKM  C20  C5   C  0  1  N  N  R  64.699  64.392  87.731  -3.744   0.207  -0.683  C20  VKM   5  
VKM  C23  C6   C  0  1  Y  N  N  65.968  65.218  87.784  -5.234   0.147  -0.469  C23  VKM   6  
VKM  C24  C7   C  0  1  Y  N  N  65.914  66.587  87.484  -5.856  -1.073  -0.282  C24  VKM   7  
VKM  C25  C8   C  0  1  Y  N  N  67.086  67.298  87.222  -7.223  -1.130  -0.086  C25  VKM   8  
VKM  C26  C9   C  0  1  Y  N  N  68.315  66.645  87.301  -7.969   0.036  -0.076  C26  VKM   9  
VKM  C28  C10  C  0  1  Y  N  N  67.213  64.588  87.913  -5.977   1.312  -0.454  C28  VKM  10  
VKM  C6   C11  C  0  1  Y  N  N  57.050  62.063  85.854   5.474   0.099  -0.316  C6   VKM  11  
VKM  C7   C12  C  0  1  N  N  N  57.918  60.919  86.018   4.470   0.705   0.464  C7   VKM  12  
VKM  N9   N1   N  0  1  N  N  N  58.515  60.889  87.243   3.750  -0.077   1.299  N9   VKM  13  
VKM  O21  O1   O  0  1  N  N  N  63.580  65.118  88.216  -3.309  -0.894  -1.517  O21  VKM  14  
VKM  C10  C13  C  0  1  N  N  N  58.162  61.797  88.225   3.997  -1.410   1.375  C10  VKM  15  
VKM  C12  C14  C  0  1  N  N  N  59.561  59.876  87.545   2.697   0.517   2.128  C12  VKM  16  
VKM  C19  C15  C  0  1  N  N  N  64.651  63.104  88.552  -2.997   0.007   0.655  C19  VKM  17  
VKM  C22  C16  C  0  1  N  N  N  62.516  64.171  88.229  -1.896  -1.036  -1.254  C22  VKM  18  
VKM  C27  C17  C  0  1  Y  N  N  68.384  65.306  87.673  -7.345   1.258  -0.263  C27  VKM  19  
VKM  C3   C18  C  0  1  Y  N  N  55.727  63.652  85.119   7.093  -0.523  -1.659  C3   VKM  20  
VKM  C5   C19  C  0  1  Y  N  N  56.774  62.958  86.825   5.683  -1.277  -0.196  C5   VKM  21  
VKM  F29  F1   F  0  1  N  N  N  69.450  67.304  87.024  -9.305  -0.018   0.116  F29  VKM  22  
VKM  N11  N2   N  0  1  N  N  N  57.327  62.817  88.067   4.920  -1.986   0.661  N11  VKM  23  
VKM  N14  N3   N  0  1  Y  N  N  61.129  61.704  88.207   0.500  -0.476   1.397  N14  VKM  24  
VKM  N16  N4   N  0  1  Y  N  N  63.075  60.543  88.185  -0.164   1.104   0.129  N16  VKM  25  
VKM  N2   N5   N  0  1  Y  N  N  56.388  62.502  84.734   6.380   0.547  -1.253  N2   VKM  26  
VKM  N4   N6   N  0  1  Y  N  N  55.922  63.928  86.398   6.681  -1.595  -1.037  N4   VKM  27  
VKM  O17  O2   O  0  1  Y  N  N  62.021  59.696  87.819   0.915   1.439   0.569  O17  VKM  28  
VKM  O8   O3   O  0  1  N  N  N  58.110  60.076  85.156   4.256   1.903   0.389  O8   VKM  29  
VKM  H31  H1   H  0  1  N  N  N  57.085  61.036  83.401   5.892   2.095  -2.582  H31  VKM  30  
VKM  H30  H2   H  0  1  N  N  N  55.488  61.750  82.993   6.263   2.615  -0.920  H30  VKM  31  
VKM  H32  H3   H  0  1  N  N  N  56.990  62.700  82.732   7.576   2.097  -2.005  H32  VKM  32  
VKM  H37  H4   H  0  1  N  N  N  63.028  63.029  89.969  -1.763  -1.785   0.789  H37  VKM  33  
VKM  H40  H5   H  0  1  N  N  N  64.520  64.122  86.680  -3.464   1.159  -1.136  H40  VKM  34  
VKM  H43  H6   H  0  1  N  N  N  64.961  67.094  87.456  -5.274  -1.983  -0.290  H43  VKM  35  
VKM  H44  H7   H  0  1  N  N  N  67.041  68.345  86.960  -7.708  -2.084   0.060  H44  VKM  36  
VKM  H46  H8   H  0  1  N  N  N  67.266  63.548  88.198  -5.490   2.266  -0.595  H46  VKM  37  
VKM  H34  H9   H  0  1  N  N  N  58.603  61.665  89.202   3.407  -2.013   2.050  H34  VKM  38  
VKM  H36  H10  H  0  1  N  N  N  59.238  59.294  88.421   2.958   1.549   2.362  H36  VKM  39  
VKM  H35  H11  H  0  1  N  N  N  59.658  59.208  86.677   2.598  -0.052   3.052  H35  VKM  40  
VKM  H38  H12  H  0  1  N  N  N  65.017  62.249  87.965  -3.621  -0.539   1.362  H38  VKM  41  
VKM  H39  H13  H  0  1  N  N  N  65.247  63.200  89.471  -2.697   0.969   1.072  H39  VKM  42  
VKM  H41  H14  H  0  1  N  N  N  61.667  64.538  88.824  -1.332  -0.274  -1.793  H41  VKM  43  
VKM  H42  H15  H  0  1  N  N  N  62.176  63.944  87.208  -1.555  -2.032  -1.536  H42  VKM  44  
VKM  H45  H16  H  0  1  N  N  N  69.344  64.823  87.776  -7.926   2.168  -0.256  H45  VKM  45  
VKM  H33  H17  H  0  1  N  N  N  55.123  64.254  84.456   7.887  -0.498  -2.391  H33  VKM  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VKM  C1   N2   SING  N  N   1  
VKM  N2   C3   SING  Y  N   2  
VKM  N2   C6   SING  Y  N   3  
VKM  C3   N4   DOUB  Y  N   4  
VKM  O8   C7   DOUB  N  N   5  
VKM  C6   C7   SING  N  N   6  
VKM  C6   C5   DOUB  Y  N   7  
VKM  C7   N9   SING  N  N   8  
VKM  N4   C5   SING  Y  N   9  
VKM  C5   N11  SING  N  N  10  
VKM  F29  C26  SING  N  N  11  
VKM  C25  C26  DOUB  Y  N  12  
VKM  C25  C24  SING  Y  N  13  
VKM  N9   C12  SING  N  N  14  
VKM  N9   C10  SING  N  N  15  
VKM  C26  C27  SING  Y  N  16  
VKM  C24  C23  DOUB  Y  N  17  
VKM  C12  C13  SING  N  N  18  
VKM  C27  C28  DOUB  Y  N  19  
VKM  C20  C23  SING  N  N  20  
VKM  C20  O21  SING  N  N  21  
VKM  C20  C19  SING  N  N  22  
VKM  C23  C28  SING  Y  N  23  
VKM  O17  C13  SING  Y  N  24  
VKM  O17  N16  SING  Y  N  25  
VKM  C13  N14  DOUB  Y  N  26  
VKM  N11  C10  DOUB  N  N  27  
VKM  N16  C15  DOUB  Y  N  28  
VKM  N14  C15  SING  Y  N  29  
VKM  O21  C22  SING  N  N  30  
VKM  C22  C18  SING  N  N  31  
VKM  C15  C18  SING  N  N  32  
VKM  C19  C18  SING  N  N  33  
VKM  C1   H31  SING  N  N  34  
VKM  C1   H30  SING  N  N  35  
VKM  C1   H32  SING  N  N  36  
VKM  C18  H37  SING  N  N  37  
VKM  C20  H40  SING  N  N  38  
VKM  C24  H43  SING  N  N  39  
VKM  C25  H44  SING  N  N  40  
VKM  C28  H46  SING  N  N  41  
VKM  C10  H34  SING  N  N  42  
VKM  C12  H36  SING  N  N  43  
VKM  C12  H35  SING  N  N  44  
VKM  C19  H38  SING  N  N  45  
VKM  C19  H39  SING  N  N  46  
VKM  C22  H41  SING  N  N  47  
VKM  C22  H42  SING  N  N  48  
VKM  C27  H45  SING  N  N  49  
VKM  C3   H33  SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VKM  SMILES            ACDLabs               12.01  "Cn5c4C(N(Cc3nc(C2CC(c1ccc(cc1)F)OC2)no3)C=Nc4nc5)=O"  
VKM  InChI             InChI                 1.03   "InChI=1S/C19H17FN6O3/c1-25-9-21-18-16(25)19(27)26(10-22-18)7-15-23-17(24-29-15)12-6-14(28-8-12)11-2-4-13(20)5-3-11/h2-5,9-10,12,14H,6-8H2,1H3/t12-,14+/m0/s1"  
VKM  InChIKey          InChI                 1.03   KVSPYEYQFMGJNK-GXTWGEPZSA-N  
VKM  SMILES_CANONICAL  CACTVS                3.385  "Cn1cnc2N=CN(Cc3onc(n3)[C@@H]4CO[C@H](C4)c5ccc(F)cc5)C(=O)c12"  
VKM  SMILES            CACTVS                3.385  "Cn1cnc2N=CN(Cc3onc(n3)[CH]4CO[CH](C4)c5ccc(F)cc5)C(=O)c12"  
VKM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cn1cnc2c1C(=O)N(C=N2)Cc3nc(no3)[C@H]4C[C@@H](OC4)c5ccc(cc5)F"  
VKM  SMILES            "OpenEye OEToolkits"  2.0.7  "Cn1cnc2c1C(=O)N(C=N2)Cc3nc(no3)C4CC(OC4)c5ccc(cc5)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VKM  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-({3-[(3R,5R)-5-(4-fluorophenyl)oxolan-3-yl]-1,2,4-oxadiazol-5-yl}methyl)-7-methyl-1,7-dihydro-6H-purin-6-one"  
VKM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "1-[[3-[(3~{R},5~{R})-5-(4-fluorophenyl)oxolan-3-yl]-1,2,4-oxadiazol-5-yl]methyl]-7-methyl-purin-6-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VKM  "Create component"  2020-08-21  RCSB  
VKM  "Initial release"   2021-03-31  RCSB  
##
