data_U9M
#

_chem_comp.id                                   U9M
_chem_comp.name                                 "(2R,3R,4S,5S,6S)-6-(dihydroxymethyl)-3,4-dimethoxytetrahydro-2H-pyran-2,5-diol"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C8 H16 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-05-05
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       224.208
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    U9M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
U9M  O4    O4    O  0  1  N  N  N  30.539   1.497  50.541   1.018   2.451  -0.258  O4    U9M   1  
U9M  C4    C4    C  0  1  N  N  S  29.823   1.272  51.842   0.575   1.165   0.180  C4    U9M   2  
U9M  C5    C5    C  0  1  N  N  S  28.517   2.285  51.978   1.438   0.079  -0.467  C5    U9M   3  
U9M  O5    O5    O  0  1  N  N  N  27.843   2.069  53.235   0.957  -1.208  -0.073  O5    U9M   4  
U9M  C6    C6    C  0  1  N  N  N  27.423   2.112  50.817   2.890   0.242  -0.013  C6    U9M   5  
U9M  O6    O6    O  0  1  N  N  N  26.822   0.983  50.639   2.976   0.018   1.396  O6    U9M   6  
U9M  O6B   O6B   O  0  1  N  N  N  27.113   3.101  50.040   3.712  -0.705  -0.697  O6B   U9M   7  
U9M  C3    C3    C  0  1  N  N  S  30.812   1.547  53.153  -0.886   0.959  -0.232  C3    U9M   8  
U9M  O3    O3    O  0  1  N  N  N  32.057   0.701  53.176  -1.709   1.924   0.427  O3    U9M   9  
U9M  C3M   C3M   C  0  1  N  N  N  32.043  -0.741  53.538  -2.874   2.295  -0.313  C3M   U9M  10  
U9M  C2    C2    C  0  1  N  N  R  29.920   1.292  54.460  -1.325  -0.451   0.174  C2    U9M  11  
U9M  O2    O2    O  0  1  N  N  N  30.651   1.501  55.646  -2.664  -0.681  -0.270  O2    U9M  12  
U9M  C2M   C2M   C  0  1  N  N  N  30.399   0.425  56.591  -3.404  -1.581   0.558  C2M   U9M  13  
U9M  C1    C1    C  0  1  N  N  R  28.654   2.211  54.393  -0.389  -1.475  -0.473  C1    U9M  14  
U9M  O1    O1    O  0  1  N  Y  N  27.900   1.970  55.529  -0.758  -2.790  -0.054  O1    U9M  15  
U9M  H4    H4    H  0  1  N  N  N  29.460   0.235  51.900   0.661   1.100   1.265  H4    U9M  16  
U9M  H5    H5    H  0  1  N  N  N  28.898   3.316  51.930   1.384   0.170  -1.552  H5    U9M  17  
U9M  H61   H61   H  0  1  N  N  N  28.213   1.805  50.116   3.231   1.252  -0.242  H61   U9M  18  
U9M  HO6   HO6   H  0  1  N  N  N  26.212   1.059  49.915   2.687  -0.863   1.673  HO6   U9M  19  
U9M  H45   H45   H  0  1  N  N  N  26.454   2.820  49.417   4.648  -0.659  -0.457  H45   U9M  20  
U9M  H3    H3    H  0  1  N  N  N  31.095   2.610  53.134  -0.980   1.075  -1.311  H3    U9M  21  
U9M  H481  H481  H  0  0  N  N  N  33.065  -1.143  53.484  -3.445   3.031   0.254  H481  U9M  22  
U9M  H482  H482  H  0  0  N  N  N  31.657  -0.858  54.561  -2.575   2.726  -1.269  H482  U9M  23  
U9M  H483  H483  H  0  0  N  N  N  31.396  -1.289  52.837  -3.490   1.413  -0.488  H483  U9M  24  
U9M  H2    H2    H  0  1  N  N  N  29.575   0.248  54.418  -1.279  -0.549   1.259  H2    U9M  25  
U9M  H4B1  H4B1  H  0  0  N  N  N  30.976   0.602  57.511  -2.903  -2.548   0.581  H4B1  U9M  26  
U9M  H4B2  H4B2  H  0  0  N  N  N  29.326   0.392  56.832  -3.465  -1.178   1.569  H4B2  U9M  27  
U9M  H4B3  H4B3  H  0  0  N  N  N  30.704  -0.533  56.145  -4.409  -1.702   0.154  H4B3  U9M  28  
U9M  H1    H1    H  0  1  N  N  N  29.021   3.247  54.429  -0.467  -1.404  -1.558  H1    U9M  29  
U9M  HO4   HO4   H  0  1  N  Y  N  31.282   0.908  50.482   1.906   2.685   0.044  HO4   U9M  30  
U9M  HO1   HO1   H  0  1  N  Y  N  28.447   2.066  56.299  -0.205  -3.491  -0.426  HO1   U9M  31  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
U9M  O4   C4    SING  N  N   1  
U9M  C4   C5    SING  N  N   2  
U9M  C4   C3    SING  N  N   3  
U9M  C4   H4    SING  N  N   4  
U9M  C5   O5    SING  N  N   5  
U9M  C5   C6    SING  N  N   6  
U9M  C5   H5    SING  N  N   7  
U9M  O5   C1    SING  N  N   8  
U9M  C6   O6    SING  N  N   9  
U9M  C6   O6B   SING  N  N  10  
U9M  C6   H61   SING  N  N  11  
U9M  O6   HO6   SING  N  N  12  
U9M  O6B  H45   SING  N  N  13  
U9M  C3   O3    SING  N  N  14  
U9M  C3   C2    SING  N  N  15  
U9M  C3   H3    SING  N  N  16  
U9M  O3   C3M   SING  N  N  17  
U9M  C3M  H481  SING  N  N  18  
U9M  C3M  H482  SING  N  N  19  
U9M  C3M  H483  SING  N  N  20  
U9M  C2   O2    SING  N  N  21  
U9M  C2   C1    SING  N  N  22  
U9M  C2   H2    SING  N  N  23  
U9M  O2   C2M   SING  N  N  24  
U9M  C2M  H4B1  SING  N  N  25  
U9M  C2M  H4B2  SING  N  N  26  
U9M  C2M  H4B3  SING  N  N  27  
U9M  C1   O1    SING  N  N  28  
U9M  C1   H1    SING  N  N  29  
U9M  O4   HO4   SING  N  N  30  
U9M  O1   HO1   SING  N  N  31  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
U9M  SMILES            ACDLabs               12.01  "OC1C(OC(C(C1OC)OC)O)C(O)O"  
U9M  InChI             InChI                 1.03   "InChI=1S/C8H16O7/c1-13-4-3(9)5(7(10)11)15-8(12)6(4)14-2/h3-12H,1-2H3/t3-,4-,5-,6+,8+/m0/s1"  
U9M  InChIKey          InChI                 1.03   ABSMSNIBELWCOB-GRJZWZNASA-N  
U9M  SMILES_CANONICAL  CACTVS                3.385  "CO[C@H]1[C@H](O)O[C@H](C(O)O)[C@@H](O)[C@@H]1OC"  
U9M  SMILES            CACTVS                3.385  "CO[CH]1[CH](O)O[CH](C(O)O)[CH](O)[CH]1OC"  
U9M  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CO[C@H]1[C@@H]([C@H](O[C@H]([C@@H]1OC)O)C(O)O)O"  
U9M  SMILES            "OpenEye OEToolkits"  2.0.7  "COC1C(C(OC(C1OC)O)C(O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
U9M  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R,3R,4S,5S,6S)-6-(dihydroxymethyl)-3,4-dimethoxytetrahydro-2H-pyran-2,5-diol (non-preferred name)"  
U9M  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R},3~{R},4~{S},5~{S},6~{S})-6-[bis(oxidanyl)methyl]-3,4-dimethoxy-oxane-2,5-diol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
U9M  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
U9M  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
U9M  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
U9M  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
U9M  "Create component"  2020-05-05  RCSB  
U9M  "Initial release"   2020-07-29  RCSB  
##
