data_TVM
#

_chem_comp.id                                   TVM
_chem_comp.name                                 "3-O-[(3-methoxyphenyl)methyl]-beta-D-galactopyranose"
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C14 H20 O7"
_chem_comp.mon_nstd_parent_comp_id              GAL
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-04-01
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       300.304
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    TVM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5NFA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TVM  C4   C4   C  0  1  N  N  S  18.421   -6.929  -0.766  -1.930   1.166  -0.062  C4   TVM   1  
TVM  C3   C3   C  0  1  N  N  S  18.068   -8.150  -1.571  -1.197  -0.072   0.466  C3   TVM   2  
TVM  C2   C2   C  0  1  N  N  R  19.001   -9.229  -1.214  -1.883  -1.329  -0.078  C2   TVM   3  
TVM  C1   C1   C  0  1  N  N  R  20.431   -8.830  -1.301  -3.359  -1.311   0.327  C1   TVM   4  
TVM  O6   O6   O  0  1  N  N  N  21.711   -5.191  -0.088  -5.503   2.283   0.241  O6   TVM   5  
TVM  O2   O2   O  0  1  N  N  N  18.814  -10.294  -2.218  -1.252  -2.490   0.465  O2   TVM   6  
TVM  O4   O4   O  0  1  N  N  N  18.008   -7.119   0.665  -1.827   1.209  -1.487  O4   TVM   7  
TVM  C5   C5   C  0  1  N  N  R  19.905   -6.569  -0.873  -3.405   1.089   0.342  C5   TVM   8  
TVM  C6   C6   C  0  1  N  N  N  20.329   -5.395  -0.012  -4.155   2.292  -0.232  C6   TVM   9  
TVM  O5   O5   O  0  1  N  N  N  20.693   -7.699  -0.439  -3.974  -0.120  -0.169  O5   TVM  10  
TVM  O3   O3   O  0  1  N  N  N  16.755   -8.510  -1.295   0.163  -0.043   0.030  O3   TVM  11  
TVM  C24  C24  C  0  1  N  N  N  15.821   -7.801  -2.121   1.073  -0.689   0.924  C24  TVM  12  
TVM  C25  C25  C  0  1  Y  N  N  14.454   -8.485  -2.037   2.471  -0.599   0.368  C25  TVM  13  
TVM  C26  C26  C  0  1  Y  N  N  13.371   -7.910  -2.653   2.946  -1.590  -0.472  C26  TVM  14  
TVM  C27  C27  C  0  1  Y  N  N  12.134   -8.572  -2.548   4.228  -1.510  -0.983  C27  TVM  15  
TVM  C28  C28  C  0  1  Y  N  N  11.966   -9.785  -1.877   5.038  -0.441  -0.655  C28  TVM  16  
TVM  C29  C29  C  0  1  Y  N  N  13.034  -10.394  -1.313   4.565   0.554   0.187  C29  TVM  17  
TVM  C30  C30  C  0  1  Y  N  N  14.290   -9.731  -1.396   3.276   0.475   0.694  C30  TVM  18  
TVM  O31  O31  O  0  1  N  N  N  12.835  -11.618  -0.646   5.360   1.608   0.511  O31  TVM  19  
TVM  C32  C32  C  0  1  N  N  N  13.913  -12.312   0.063   6.673   1.626  -0.052  C32  TVM  20  
TVM  H4   H1   H  0  1  N  N  N  17.847   -6.083  -1.172  -1.482   2.063   0.363  H4   TVM  21  
TVM  H3   H2   H  0  1  N  N  N  18.182   -7.913  -2.639  -1.231  -0.078   1.555  H3   TVM  22  
TVM  H2   H6   H  0  1  N  N  N  18.776   -9.611  -0.207  -1.804  -1.345  -1.165  H2   TVM  23  
TVM  H1   H3   H  0  1  N  N  N  20.672   -8.569  -2.342  -3.438  -1.335   1.414  H1   TVM  24  
TVM  HO6  HO6  H  0  1  N  Y  N  21.953   -4.452   0.458  -6.039   3.019  -0.084  HO6  TVM  25  
TVM  HO2  HO2  H  0  1  N  Y  N  19.400  -11.017  -2.027  -1.636  -3.324   0.163  HO2  TVM  26  
TVM  HO4  HO4  H  0  1  N  Y  N  18.234   -6.344   1.166  -2.272   1.968  -1.890  HO4  TVM  27  
TVM  H5   H5   H  0  1  N  N  N  20.135   -6.338  -1.924  -3.484   1.096   1.429  H5   TVM  28  
TVM  H61  H61  H  0  1  N  N  N  19.812   -4.489  -0.360  -4.151   2.236  -1.321  H61  TVM  29  
TVM  H62  H62  H  0  1  N  N  N  20.052   -5.597   1.033  -3.664   3.212   0.086  H62  TVM  30  
TVM  H28  H28  H  0  1  N  N  N  16.172   -7.808  -3.163   1.036  -0.199   1.896  H28  TVM  31  
TVM  H29  H29  H  0  1  N  N  N  15.735   -6.762  -1.770   0.792  -1.736   1.033  H29  TVM  32  
TVM  H30  H30  H  0  1  N  N  N  13.465   -6.983  -3.199   2.314  -2.427  -0.729  H30  TVM  33  
TVM  H31  H31  H  0  1  N  N  N  11.270   -8.119  -3.010   4.596  -2.286  -1.638  H31  TVM  34  
TVM  H32  H32  H  0  1  N  N  N  10.987  -10.235  -1.809   6.040  -0.380  -1.054  H32  TVM  35  
TVM  H33  H33  H  0  1  N  N  N  15.154  -10.201  -0.950   2.903   1.251   1.346  H33  TVM  36  
TVM  H34  H34  H  0  1  N  N  N  13.524  -13.242   0.504   7.219   0.738   0.268  H34  TVM  37  
TVM  H35  H35  H  0  1  N  N  N  14.722  -12.552  -0.643   6.602   1.637  -1.140  H35  TVM  38  
TVM  H36  H36  H  0  1  N  N  N  14.304  -11.664   0.861   7.201   2.518   0.286  H36  TVM  39  
TVM  O1   O1   O  0  1  N  Y  N  21.292   -9.835  -0.836  -4.019  -2.453  -0.224  O1   TVM  40  
TVM  HO1  HO1  H  0  1  N  Y  N  22.192   -9.540  -0.909  -4.959  -2.506  -0.007  HO1  TVM  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TVM  C26  C27  DOUB  Y  N   1  
TVM  C26  C25  SING  Y  N   2  
TVM  C27  C28  SING  Y  N   3  
TVM  O2   C2   SING  N  N   4  
TVM  C24  C25  SING  N  N   5  
TVM  C24  O3   SING  N  N   6  
TVM  C25  C30  DOUB  Y  N   7  
TVM  C28  C29  DOUB  Y  N   8  
TVM  C3   O3   SING  N  N   9  
TVM  C3   C2   SING  N  N  10  
TVM  C3   C4   SING  N  N  11  
TVM  C30  C29  SING  Y  N  12  
TVM  C29  O31  SING  N  N  13  
TVM  C1   C2   SING  N  N  14  
TVM  C1   O5   SING  N  N  15  
TVM  C5   C4   SING  N  N  16  
TVM  C5   O5   SING  N  N  17  
TVM  C5   C6   SING  N  N  18  
TVM  C4   O4   SING  N  N  19  
TVM  O31  C32  SING  N  N  20  
TVM  O6   C6   SING  N  N  21  
TVM  C4   H4   SING  N  N  22  
TVM  C3   H3   SING  N  N  23  
TVM  C2   H2   SING  N  N  24  
TVM  C1   H1   SING  N  N  25  
TVM  O6   HO6  SING  N  N  26  
TVM  O2   HO2  SING  N  N  27  
TVM  O4   HO4  SING  N  N  28  
TVM  C5   H5   SING  N  N  29  
TVM  C6   H61  SING  N  N  30  
TVM  C6   H62  SING  N  N  31  
TVM  C24  H28  SING  N  N  32  
TVM  C24  H29  SING  N  N  33  
TVM  C26  H30  SING  N  N  34  
TVM  C27  H31  SING  N  N  35  
TVM  C28  H32  SING  N  N  36  
TVM  C30  H33  SING  N  N  37  
TVM  C32  H34  SING  N  N  38  
TVM  C32  H35  SING  N  N  39  
TVM  C32  H36  SING  N  N  40  
TVM  C1   O1   SING  N  N  41  
TVM  O1   HO1  SING  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TVM  SMILES            ACDLabs               12.01  "C2(O)C(OCc1cc(ccc1)OC)C(C(OC2CO)O)O"  
TVM  InChI             InChI                 1.03   "InChI=1S/C14H20O7/c1-19-9-4-2-3-8(5-9)7-20-13-11(16)10(6-15)21-14(18)12(13)17/h2-5,10-18H,6-7H2,1H3/t10-,11+,12-,13+,14-/m1/s1"  
TVM  InChIKey          InChI                 1.03   UGTWEYDLNXWGMR-XHJNMGKDSA-N  
TVM  SMILES_CANONICAL  CACTVS                3.385  "COc1cccc(CO[C@@H]2[C@@H](O)[C@H](O)O[C@H](CO)[C@@H]2O)c1"  
TVM  SMILES            CACTVS                3.385  "COc1cccc(CO[CH]2[CH](O)[CH](O)O[CH](CO)[CH]2O)c1"  
TVM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1cccc(c1)CO[C@H]2[C@H]([C@H](O[C@H]([C@@H]2O)O)CO)O"  
TVM  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1cccc(c1)COC2C(C(OC(C2O)O)CO)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TVM  "SYSTEMATIC NAME"  ACDLabs               12.01  "3-O-[(3-methoxyphenyl)methyl]-beta-D-galactopyranose"  
TVM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-4-[(3-methoxyphenyl)methoxy]oxane-2,3,5-triol"  
#
_pdbx_chem_comp_related.comp_id            TVM
_pdbx_chem_comp_related.related_comp_id    GAL
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  TVM  C1   GAL  C1   "Carbohydrate core"  
 2  TVM  C2   GAL  C2   "Carbohydrate core"  
 3  TVM  C3   GAL  C3   "Carbohydrate core"  
 4  TVM  C4   GAL  C4   "Carbohydrate core"  
 5  TVM  C5   GAL  C5   "Carbohydrate core"  
 6  TVM  C6   GAL  C6   "Carbohydrate core"  
 7  TVM  O1   GAL  O1   "Carbohydrate core"  
 8  TVM  O2   GAL  O2   "Carbohydrate core"  
 9  TVM  O3   GAL  O3   "Carbohydrate core"  
10  TVM  O4   GAL  O4   "Carbohydrate core"  
11  TVM  O5   GAL  O5   "Carbohydrate core"  
12  TVM  O6   GAL  O6   "Carbohydrate core"  
13  TVM  H4   GAL  H4   "Carbohydrate core"  
14  TVM  H3   GAL  H3   "Carbohydrate core"  
15  TVM  H1   GAL  H1   "Carbohydrate core"  
16  TVM  H5   GAL  H5   "Carbohydrate core"  
17  TVM  H2   GAL  H2   "Carbohydrate core"  
18  TVM  H61  GAL  H61  "Carbohydrate core"  
19  TVM  H62  GAL  H62  "Carbohydrate core"  
20  TVM  HO1  GAL  HO1  "Carbohydrate core"  
21  TVM  HO2  GAL  HO2  "Carbohydrate core"  
22  TVM  HO4  GAL  HO4  "Carbohydrate core"  
23  TVM  HO6  GAL  HO6  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
TVM  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
TVM  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
TVM  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
TVM  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TVM  "Create component"          2020-04-01  RCSB  
TVM  "Modify atom id"            2020-07-17  RCSB  
TVM  "Modify component atom id"  2020-07-17  RCSB  
TVM  "Initial release"           2020-07-29  RCSB  
##
