data_RNM
#

_chem_comp.id                                   RNM
_chem_comp.name                                 "(7R)-7-methyl-2-({[(3R)-1-methylpiperidin-3-yl]methyl}sulfanyl)-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H26 N4 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-02-17
_chem_comp.pdbx_modified_date                   2020-05-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       362.556
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RNM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6VUW
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RNM  N01  N1   N  0  1  N  N  N  22.274  -11.401  37.737   1.347   2.470   0.121  N01  RNM   1  
RNM  C02  C1   C  0  1  Y  N  N  21.038  -10.865  37.257   1.072   1.124  -0.041  C02  RNM   2  
RNM  N03  N2   N  0  1  Y  N  N  20.497   -9.881  37.927  -0.176   0.707  -0.188  N03  RNM   3  
RNM  C04  C2   C  0  1  Y  N  N  19.368   -9.273  37.595  -0.454  -0.582  -0.345  C04  RNM   4  
RNM  S05  S1   S  0  1  N  N  N  18.854   -7.917  38.701  -2.134  -1.077  -0.535  S05  RNM   5  
RNM  C06  C3   C  0  1  N  N  N  19.702   -7.850  40.358  -2.950   0.536  -0.435  C06  RNM   6  
RNM  C07  C4   C  0  1  N  N  R  19.019   -8.630  41.517  -4.462   0.352  -0.579  C07  RNM   7  
RNM  C08  C5   C  0  1  N  N  N  19.827   -8.528  42.729  -5.142   1.724  -0.620  C08  RNM   8  
RNM  C09  C6   C  0  1  N  N  N  19.965   -9.713  43.576  -6.658   1.530  -0.703  C09  RNM   9  
RNM  C10  C7   C  0  1  N  N  N  19.834  -11.097  42.879  -7.129   0.702   0.495  C10  RNM  10  
RNM  N11  N3   N  0  1  N  N  N  18.772  -11.229  41.873  -6.451  -0.600   0.488  N11  RNM  11  
RNM  C12  C8   C  0  1  N  N  N  18.836  -12.252  41.178  -6.979  -1.474   1.543  C12  RNM  12  
RNM  C13  C9   C  0  1  N  N  N  18.627  -10.061  41.022  -4.996  -0.442   0.615  C13  RNM  13  
RNM  N14  N4   N  0  1  Y  N  N  18.684   -9.669  36.513   0.491  -1.504  -0.363  N14  RNM  14  
RNM  C15  C10  C  0  1  Y  N  N  19.174  -10.699  35.751   1.782  -1.170  -0.221  C15  RNM  15  
RNM  C16  C11  C  0  1  Y  N  N  20.378  -11.317  36.103   2.124   0.170  -0.059  C16  RNM  16  
RNM  C17  C12  C  0  1  Y  N  N  20.817  -12.436  35.156   3.562   0.370   0.083  C17  RNM  17  
RNM  C18  C13  C  0  1  Y  N  N  19.867  -12.599  34.122   4.271  -0.757   0.033  C18  RNM  18  
RNM  C19  C14  C  0  1  N  N  N  20.065  -13.659  33.022   5.784  -0.824   0.153  C19  RNM  19  
RNM  C20  C15  C  0  1  N  N  R  21.550  -14.054  32.839   6.359   0.579  -0.058  C20  RNM  20  
RNM  C21  C16  C  0  1  N  N  N  21.537  -15.407  32.143   7.844   0.584   0.307  C21  RNM  21  
RNM  C22  C17  C  0  1  N  N  N  22.305  -14.262  34.158   5.606   1.565   0.840  C22  RNM  22  
RNM  C23  C18  C  0  1  N  N  N  22.060  -13.271  35.272   4.187   1.747   0.273  C23  RNM  23  
RNM  S24  S2   S  0  1  Y  N  N  18.627  -11.486  34.362   3.235  -2.154  -0.212  S24  RNM  24  
RNM  H1   H1   H  0  1  N  N  N  22.552  -10.910  38.563   0.624   3.098   0.275  H1   RNM  25  
RNM  H2   H2   H  0  1  N  N  N  22.156  -12.371  37.949   2.264   2.785   0.085  H2   RNM  26  
RNM  H3   H3   H  0  1  N  N  N  20.716   -8.258  40.232  -2.730   0.995   0.529  H3   RNM  27  
RNM  H4   H4   H  0  1  N  N  N  19.767   -6.794  40.658  -2.584   1.178  -1.236  H4   RNM  28  
RNM  H5   H5   H  0  1  N  N  N  18.071   -8.109  41.716  -4.677  -0.188  -1.501  H5   RNM  29  
RNM  H6   H6   H  0  1  N  N  N  20.840   -8.229  42.420  -4.895   2.279   0.285  H6   RNM  30  
RNM  H7   H7   H  0  1  N  N  N  19.384   -7.735  43.349  -4.796   2.276  -1.493  H7   RNM  31  
RNM  H8   H8   H  0  1  N  N  N  20.958   -9.671  44.047  -7.150   2.503  -0.689  H8   RNM  32  
RNM  H9   H9   H  0  1  N  N  N  19.189   -9.658  44.353  -6.908   1.009  -1.627  H9   RNM  33  
RNM  H10  H10  H  0  1  N  N  N  19.648  -11.848  43.661  -6.891   1.231   1.418  H10  RNM  34  
RNM  H11  H11  H  0  1  N  N  N  20.792  -11.313  42.383  -8.207   0.551   0.430  H11  RNM  35  
RNM  H13  H13  H  0  1  N  N  N  18.946  -13.132  41.829  -8.058  -1.578   1.423  H13  RNM  36  
RNM  H14  H14  H  0  1  N  N  N  17.916  -12.349  40.583  -6.510  -2.455   1.472  H14  RNM  37  
RNM  H15  H15  H  0  1  N  N  N  19.703  -12.184  40.505  -6.763  -1.038   2.519  H15  RNM  38  
RNM  H16  H16  H  0  1  N  N  N  17.564  -10.012  40.743  -4.525  -1.424   0.639  H16  RNM  39  
RNM  H17  H17  H  0  1  N  N  N  19.233  -10.255  40.125  -4.768   0.093   1.538  H17  RNM  40  
RNM  H18  H18  H  0  1  N  N  N  19.688  -13.255  32.071   6.055  -1.184   1.145  H18  RNM  41  
RNM  H19  H19  H  0  1  N  N  N  19.492  -14.558  33.291   6.181  -1.501  -0.603  H19  RNM  42  
RNM  H20  H20  H  0  1  N  N  N  22.066  -13.307  32.218   6.237   0.869  -1.102  H20  RNM  43  
RNM  H21  H21  H  0  1  N  N  N  22.571  -15.747  31.982   8.377  -0.126  -0.327  H21  RNM  44  
RNM  H22  H22  H  0  1  N  N  N  21.004  -16.137  32.770   8.252   1.583   0.155  H22  RNM  45  
RNM  H23  H23  H  0  1  N  N  N  21.026  -15.315  31.173   7.963   0.297   1.352  H23  RNM  46  
RNM  H24  H24  H  0  1  N  N  N  22.033  -15.258  34.539   5.568   1.176   1.857  H24  RNM  47  
RNM  H25  H25  H  0  1  N  N  N  23.380  -14.238  33.928   6.120   2.526   0.836  H25  RNM  48  
RNM  H26  H26  H  0  1  N  N  N  21.999  -13.834  36.215   4.220   2.268  -0.683  H26  RNM  49  
RNM  H27  H27  H  0  1  N  N  N  22.921  -12.588  35.308   3.594   2.322   0.984  H27  RNM  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RNM  C21  C20  SING  N  N   1  
RNM  C20  C19  SING  N  N   2  
RNM  C20  C22  SING  N  N   3  
RNM  C19  C18  SING  N  N   4  
RNM  C18  S24  SING  Y  N   5  
RNM  C18  C17  DOUB  Y  N   6  
RNM  C22  C23  SING  N  N   7  
RNM  S24  C15  SING  Y  N   8  
RNM  C17  C23  SING  N  N   9  
RNM  C17  C16  SING  Y  N  10  
RNM  C15  C16  DOUB  Y  N  11  
RNM  C15  N14  SING  Y  N  12  
RNM  C16  C02  SING  Y  N  13  
RNM  N14  C04  DOUB  Y  N  14  
RNM  C02  N01  SING  N  N  15  
RNM  C02  N03  DOUB  Y  N  16  
RNM  C04  N03  SING  Y  N  17  
RNM  C04  S05  SING  N  N  18  
RNM  S05  C06  SING  N  N  19  
RNM  C06  C07  SING  N  N  20  
RNM  C13  C07  SING  N  N  21  
RNM  C13  N11  SING  N  N  22  
RNM  C12  N11  SING  N  N  23  
RNM  C07  C08  SING  N  N  24  
RNM  N11  C10  SING  N  N  25  
RNM  C08  C09  SING  N  N  26  
RNM  C10  C09  SING  N  N  27  
RNM  N01  H1   SING  N  N  28  
RNM  N01  H2   SING  N  N  29  
RNM  C06  H3   SING  N  N  30  
RNM  C06  H4   SING  N  N  31  
RNM  C07  H5   SING  N  N  32  
RNM  C08  H6   SING  N  N  33  
RNM  C08  H7   SING  N  N  34  
RNM  C09  H8   SING  N  N  35  
RNM  C09  H9   SING  N  N  36  
RNM  C10  H10  SING  N  N  37  
RNM  C10  H11  SING  N  N  38  
RNM  C12  H13  SING  N  N  39  
RNM  C12  H14  SING  N  N  40  
RNM  C12  H15  SING  N  N  41  
RNM  C13  H16  SING  N  N  42  
RNM  C13  H17  SING  N  N  43  
RNM  C19  H18  SING  N  N  44  
RNM  C19  H19  SING  N  N  45  
RNM  C20  H20  SING  N  N  46  
RNM  C21  H21  SING  N  N  47  
RNM  C21  H22  SING  N  N  48  
RNM  C21  H23  SING  N  N  49  
RNM  C22  H24  SING  N  N  50  
RNM  C22  H25  SING  N  N  51  
RNM  C23  H26  SING  N  N  52  
RNM  C23  H27  SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RNM  SMILES            ACDLabs               12.01  "Nc2nc(SCC1CCCN(C)C1)nc4c2c3CCC(Cc3s4)C"  
RNM  InChI             InChI                 1.03   "InChI=1S/C18H26N4S2/c1-11-5-6-13-14(8-11)24-17-15(13)16(19)20-18(21-17)23-10-12-4-3-7-22(2)9-12/h11-12H,3-10H2,1-2H3,(H2,19,20,21)/t11-,12-/m1/s1"  
RNM  InChIKey          InChI                 1.03   STWKSNMUKUNXDK-VXGBXAGGSA-N  
RNM  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1CCc2c(C1)sc3nc(SC[C@@H]4CCCN(C)C4)nc(N)c23"  
RNM  SMILES            CACTVS                3.385  "C[CH]1CCc2c(C1)sc3nc(SC[CH]4CCCN(C)C4)nc(N)c23"  
RNM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H]1CCc2c(sc3c2c(nc(n3)SC[C@@H]4CCCN(C4)C)N)C1"  
RNM  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1CCc2c(sc3c2c(nc(n3)SCC4CCCN(C4)C)N)C1"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RNM  "SYSTEMATIC NAME"  ACDLabs               12.01  "(7R)-7-methyl-2-({[(3R)-1-methylpiperidin-3-yl]methyl}sulfanyl)-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4-amine"  
RNM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(7~{R})-7-methyl-2-[[(3~{R})-1-methylpiperidin-3-yl]methylsulfanyl]-5,6,7,8-tetrahydro-[1]benzothiolo[2,3-d]pyrimidin-4-amine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RNM  "Create component"  2020-02-17  RCSB  
RNM  "Initial release"   2020-06-03  RCSB  
##
