data_PNM
# 
_chem_comp.id                                    PNM 
_chem_comp.name                                  "OPEN FORM - PENICILLIN G" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H20 N2 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2000-10-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        336.406 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PNM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1GHP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PNM O8   O8   O 0 1 N N N N N N 4.891 -10.980 -11.986 -3.127 0.310  -0.385 O8   PNM 1  
PNM C7   C7   C 0 1 N N N N N N 3.748 -10.586 -12.111 -2.652 -0.617 0.224  C7   PNM 2  
PNM N4   N4   N 0 1 N N N N N N 4.566 -7.897  -11.806 -0.735 0.615  2.210  N4   PNM 3  
PNM C3   C3   C 0 1 N N S N N N 4.799 -6.773  -10.861 0.189  0.839  3.325  C3   PNM 4  
PNM C11  C11  C 0 1 N N N N N N 6.130 -6.060  -11.134 -0.494 0.438  4.606  C11  PNM 5  
PNM O13  O13  O 0 1 N N N N N N 6.847 -5.846  -10.132 -0.158 1.033  5.761  O13  PNM 6  
PNM O12  O12  O 0 1 N N N N N N 6.519 -5.845  -12.273 -1.346 -0.418 4.593  O12  PNM 7  
PNM C2   C2   C 0 1 N N N N N N 3.563 -5.858  -10.862 1.511  0.048  3.207  C2   PNM 8  
PNM C10  C10  C 0 1 N N N N N N 3.566 -4.896  -9.680  1.736  -0.828 4.441  C10  PNM 9  
PNM C9   C9   C 0 1 N N N N N N 3.442 -5.073  -12.175 2.696  0.990  2.985  C9   PNM 10 
PNM S1   S1   S 0 1 N N N N N N 2.183 -7.039  -10.732 1.200  -0.985 1.712  S1   PNM 11 
PNM C5   C5   C 0 1 N N R N N N 3.165 -8.312  -11.626 -0.634 -0.767 1.657  C5   PNM 12 
PNM C6   C6   C 0 1 N N R N N N 3.130 -9.712  -11.045 -1.161 -0.835 0.222  C6   PNM 13 
PNM N14  N14  N 0 1 N N N N N N 3.797 -9.799  -9.749  -0.516 0.204  -0.584 N14  PNM 14 
PNM C15  C15  C 0 1 N N N N N N 3.120 -9.679  -8.599  -0.319 0.008  -1.903 C15  PNM 15 
PNM O16  O16  O 0 1 N N N N N N 1.884 -9.599  -8.573  -0.676 -1.028 -2.422 O16  PNM 16 
PNM C17  C17  C 0 1 N N N N N N 3.930 -9.701  -7.248  0.342  1.077  -2.732 C17  PNM 17 
PNM C18  C18  C 0 1 Y N N N N N 4.652 -8.394  -6.959  0.442  0.614  -4.163 C18  PNM 18 
PNM C19  C19  C 0 1 Y N N N N N 3.942 -7.215  -6.738  -0.581 0.885  -5.050 C19  PNM 19 
PNM C20  C20  C 0 1 Y N N N N N 4.617 -5.984  -6.571  -0.490 0.459  -6.362 C20  PNM 20 
PNM C21  C21  C 0 1 Y N N N N N 6.022 -5.948  -6.620  0.626  -0.236 -6.787 C21  PNM 21 
PNM C22  C22  C 0 1 Y N N N N N 6.727 -7.120  -6.823  1.650  -0.506 -5.900 C22  PNM 22 
PNM C23  C23  C 0 1 Y N N N N N 6.052 -8.329  -6.992  1.561  -0.077 -4.589 C23  PNM 23 
PNM HC7  HC7  H 0 1 N N N N N N 3.330 -10.967 -13.058 -3.295 -1.291 0.770  HC7  PNM 24 
PNM H4   H4   H 0 1 N N N N N N 5.231 -8.662  -11.694 -1.667 0.710  2.584  H4   PNM 25 
PNM HC3  HC3  H 0 1 N N N N N N 4.917 -7.160  -9.822  0.423  1.903  3.374  HC3  PNM 26 
PNM HXT  HXT  H 0 1 N N N N N N 7.671 -5.404  -10.301 -0.597 0.776  6.583  HXT  PNM 27 
PNM H101 1H10 H 0 0 N N N N N N 2.669 -4.232  -9.680  2.645  -1.415 4.309  H101 PNM 28 
PNM H102 2H10 H 0 0 N N N N N N 3.664 -5.442  -8.713  1.838  -0.195 5.323  H102 PNM 29 
PNM H103 3H10 H 0 0 N N N N N N 4.509 -4.302  -9.643  0.886  -1.497 4.571  H103 PNM 30 
PNM HC91 1HC9 H 0 0 N N N N N N 2.545 -4.409  -12.175 3.605  0.404  2.851  HC91 PNM 31 
PNM HC92 2HC9 H 0 0 N N N N N N 4.373 -4.499  -12.394 2.518  1.593  2.095  HC92 PNM 32 
PNM HC93 3HC9 H 0 0 N N N N N N 3.445 -5.753  -13.058 2.808  1.643  3.850  HC93 PNM 33 
PNM HC5  HC5  H 0 1 N N N N N N 2.645 -8.378  -12.610 -1.140 -1.490 2.297  HC5  PNM 34 
PNM HC6  HC6  H 0 1 N N N N N N 2.092 -10.045 -10.810 -0.937 -1.814 -0.201 HC6  PNM 35 
PNM H14  H14  H 0 1 N N N N N N 4.799 -9.953  -9.640  -0.231 1.033  -0.169 H14  PNM 36 
PNM H171 1H17 H 0 0 N N N N N N 3.270 -9.986  -6.395  -0.249 1.991  -2.687 H171 PNM 37 
PNM H172 2H17 H 0 0 N N N N N N 4.641 -10.559 -7.226  1.342  1.272  -2.343 H172 PNM 38 
PNM H19  H19  H 0 1 N N N N N N 2.840 -7.256  -6.695  -1.453 1.429  -4.719 H19  PNM 39 
PNM H20  H20  H 0 1 N N N N N N 4.048 -5.053  -6.402  -1.290 0.670  -7.056 H20  PNM 40 
PNM H21  H21  H 0 1 N N N N N N 6.571 -4.999  -6.499  0.697  -0.569 -7.812 H21  PNM 41 
PNM H22  H22  H 0 1 N N N N N N 7.829 -7.090  -6.850  2.522  -1.051 -6.231 H22  PNM 42 
PNM H23  H23  H 0 1 N N N N N N 6.636 -9.250  -7.154  2.362  -0.288 -3.895 H23  PNM 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PNM O8  C7   DOUB N N 1  
PNM C7  C6   SING N N 2  
PNM C7  HC7  SING N N 3  
PNM N4  C3   SING N N 4  
PNM N4  C5   SING N N 5  
PNM N4  H4   SING N N 6  
PNM C3  C11  SING N N 7  
PNM C3  C2   SING N N 8  
PNM C3  HC3  SING N N 9  
PNM C11 O13  SING N N 10 
PNM C11 O12  DOUB N N 11 
PNM O13 HXT  SING N N 12 
PNM C2  C10  SING N N 13 
PNM C2  C9   SING N N 14 
PNM C2  S1   SING N N 15 
PNM C10 H101 SING N N 16 
PNM C10 H102 SING N N 17 
PNM C10 H103 SING N N 18 
PNM C9  HC91 SING N N 19 
PNM C9  HC92 SING N N 20 
PNM C9  HC93 SING N N 21 
PNM S1  C5   SING N N 22 
PNM C5  C6   SING N N 23 
PNM C5  HC5  SING N N 24 
PNM C6  N14  SING N N 25 
PNM C6  HC6  SING N N 26 
PNM N14 C15  SING N N 27 
PNM N14 H14  SING N N 28 
PNM C15 O16  DOUB N N 29 
PNM C15 C17  SING N N 30 
PNM C17 C18  SING N N 31 
PNM C17 H171 SING N N 32 
PNM C17 H172 SING N N 33 
PNM C18 C19  DOUB Y N 34 
PNM C18 C23  SING Y N 35 
PNM C19 C20  SING Y N 36 
PNM C19 H19  SING N N 37 
PNM C20 C21  DOUB Y N 38 
PNM C20 H20  SING N N 39 
PNM C21 C22  SING Y N 40 
PNM C21 H21  SING N N 41 
PNM C22 C23  DOUB Y N 42 
PNM C22 H22  SING N N 43 
PNM C23 H23  SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PNM SMILES           ACDLabs              10.04 "O=C(NC(C=O)C1SC(C(N1)C(=O)O)(C)C)Cc2ccccc2"                                                                                                                  
PNM SMILES_CANONICAL CACTVS               3.341 "CC1(C)S[C@@H](N[C@H]1C(O)=O)[C@H](NC(=O)Cc2ccccc2)C=O"                                                                                                       
PNM SMILES           CACTVS               3.341 "CC1(C)S[CH](N[CH]1C(O)=O)[CH](NC(=O)Cc2ccccc2)C=O"                                                                                                           
PNM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1([C@@H](N[C@H](S1)[C@@H](C=O)NC(=O)Cc2ccccc2)C(=O)O)C"                                                                                                    
PNM SMILES           "OpenEye OEToolkits" 1.5.0 "CC1(C(NC(S1)C(C=O)NC(=O)Cc2ccccc2)C(=O)O)C"                                                                                                                  
PNM InChI            InChI                1.03  "InChI=1S/C16H20N2O4S/c1-16(2)13(15(21)22)18-14(23-16)11(9-19)17-12(20)8-10-6-4-3-5-7-10/h3-7,9,11,13-14,18H,8H2,1-2H3,(H,17,20)(H,21,22)/t11-,13+,14-/m1/s1" 
PNM InChIKey         InChI                1.03  OGFZUTGOGYUTKZ-KWCYVHTRSA-N                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PNM "SYSTEMATIC NAME" ACDLabs              10.04 "(2R,4S)-5,5-dimethyl-2-{(1R)-2-oxo-1-[(phenylacetyl)amino]ethyl}-1,3-thiazolidine-4-carboxylic acid"   
PNM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,4S)-5,5-dimethyl-2-[(1R)-2-oxo-1-(2-phenylethanoylamino)ethyl]-1,3-thiazolidine-4-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PNM "Create component"  2000-10-23 EBI  
PNM "Modify descriptor" 2011-06-04 RCSB 
PNM "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            PNM 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C7 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
