data_O7M
# 
_chem_comp.id                                    O7M 
_chem_comp.name                                  
;6-(methoxycarbonyl)uridine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H15 N2 O11 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-10-30 
_chem_comp.pdbx_modified_date                    2013-11-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        382.217 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     O7M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3WK0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
O7M O3P   O3P   O 0 1 N N N 18.995 33.505 37.445 4.729  -1.923 0.020  O3P   O7M 1  
O7M P     P     P 0 1 N N N 19.096 34.653 38.402 4.725  -0.629 -0.698 P     O7M 2  
O7M O1P   O1P   O 0 1 N N N 17.805 34.860 39.136 5.868  0.327  -0.087 O1P   O7M 3  
O7M O2P   O2P   O 0 1 N N N 20.293 34.544 39.340 5.015  -0.882 -2.261 O2P   O7M 4  
O7M "O5'" "O5'" O 0 1 N N N 19.444 35.994 37.568 3.288  0.076  -0.526 "O5'" O7M 5  
O7M "C5'" "C5'" C 0 1 N N N 18.397 36.761 36.924 2.696  0.337  0.748  "C5'" O7M 6  
O7M "C4'" "C4'" C 0 1 N N R 19.143 37.890 36.280 1.338  1.012  0.551  "C4'" O7M 7  
O7M "O4'" "O4'" O 0 1 N N N 18.230 38.629 35.435 0.389  0.078  -0.009 "O4'" O7M 8  
O7M "C3'" "C3'" C 0 1 N N S 19.658 38.944 37.226 0.735  1.417  1.915  "C3'" O7M 9  
O7M "O3'" "O3'" O 0 1 N N N 20.794 39.623 36.668 0.978  2.800  2.179  "O3'" O7M 10 
O7M "C2'" "C2'" C 0 1 N N R 18.494 39.918 37.402 -0.778 1.155  1.750  "C2'" O7M 11 
O7M "O2'" "O2'" O 0 1 N N N 18.994 41.204 37.744 -1.516 2.368  1.907  "O2'" O7M 12 
O7M "C1'" "C1'" C 0 1 N N R 17.951 39.931 35.969 -0.912 0.623  0.306  "C1'" O7M 13 
O7M N1    N1    N 0 1 N N N 16.499 40.186 35.874 -1.933 -0.425 0.240  N1    O7M 14 
O7M C2    C2    C 0 1 N N N 15.588 39.511 36.520 -1.746 -1.571 0.916  C2    O7M 15 
O7M O2    O2    O 0 1 N N N 15.917 38.554 37.252 -0.730 -1.714 1.569  O2    O7M 16 
O7M N3    N3    N 0 1 N N N 14.268 39.827 36.455 -2.652 -2.564 0.890  N3    O7M 17 
O7M C4    C4    C 0 1 N N N 13.840 40.825 35.677 -3.788 -2.434 0.174  C4    O7M 18 
O7M O4    O4    O 0 1 N N N 12.581 41.033 35.632 -4.610 -3.330 0.148  O4    O7M 19 
O7M C5    C5    C 0 1 N N N 14.744 41.589 34.924 -4.015 -1.191 -0.574 C5    O7M 20 
O7M C6    C6    C 0 1 N N N 16.073 41.192 35.029 -3.071 -0.216 -0.508 C6    O7M 21 
O7M C7    C7    C 0 1 N N N 16.951 41.548 33.905 -3.257 1.056  -1.246 C7    O7M 22 
O7M O71   O71   O 0 1 N N N 17.754 40.749 33.458 -3.742 2.018  -0.686 O71   O7M 23 
O7M O72   O72   O 0 1 N N N 16.828 42.872 33.327 -2.889 1.145  -2.539 O72   O7M 24 
O7M C8    C8    C 0 1 N N N 16.392 43.051 31.988 -3.100 2.422  -3.198 C8    O7M 25 
O7M H1    H1    H 0 1 N N N 17.169 34.216 38.847 5.923  1.194  -0.511 H1    O7M 26 
O7M H2    H2    H 0 1 N N N 20.775 33.748 39.148 5.866  -1.305 -2.440 H2    O7M 27 
O7M H3    H3    H 0 1 N N N 17.673 37.137 37.662 2.561  -0.602 1.285  H3    O7M 28 
O7M H4    H4    H 0 1 N N N 17.871 36.156 36.171 3.349  0.994  1.324  H4    O7M 29 
O7M H5    H5    H 0 1 N N N 19.977 37.490 35.685 1.439  1.885  -0.093 H5    O7M 30 
O7M H6    H6    H 0 1 N N N 19.909 38.488 38.195 1.145  0.797  2.713  H6    O7M 31 
O7M H7    H7    H 0 1 N N N 21.102 40.282 37.280 0.621  3.108  3.023  H7    O7M 32 
O7M H8    H8    H 0 1 N N N 17.748 39.536 38.114 -1.117 0.407  2.467  H8    O7M 33 
O7M H9    H9    H 0 1 N N N 19.329 41.188 38.633 -1.419 2.778  2.777  H9    O7M 34 
O7M H10   H10   H 0 1 N N N 18.494 40.696 35.395 -1.157 1.436  -0.377 H10   O7M 35 
O7M H11   H11   H 0 1 N N N 13.608 39.306 36.997 -2.488 -3.380 1.388  H11   O7M 36 
O7M H12   H12   H 0 1 N N N 14.432 42.421 34.310 -4.915 -1.051 -1.154 H12   O7M 37 
O7M H15   H15   H 0 1 N N N 16.369 44.125 31.750 -2.537 3.197  -2.679 H15   O7M 38 
O7M H16   H16   H 0 1 N N N 17.086 42.539 31.305 -2.762 2.357  -4.232 H16   O7M 39 
O7M H17   H17   H 0 1 N N N 15.383 42.628 31.871 -4.162 2.669  -3.178 H17   O7M 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
O7M C8    O72   SING N N 1  
O7M O72   C7    SING N N 2  
O7M O71   C7    DOUB N N 3  
O7M C7    C6    SING N N 4  
O7M C5    C6    DOUB N N 5  
O7M C5    C4    SING N N 6  
O7M C6    N1    SING N N 7  
O7M "O4'" "C1'" SING N N 8  
O7M "O4'" "C4'" SING N N 9  
O7M O4    C4    DOUB N N 10 
O7M C4    N3    SING N N 11 
O7M N1    "C1'" SING N N 12 
O7M N1    C2    SING N N 13 
O7M "C1'" "C2'" SING N N 14 
O7M "C4'" "C5'" SING N N 15 
O7M "C4'" "C3'" SING N N 16 
O7M N3    C2    SING N N 17 
O7M C2    O2    DOUB N N 18 
O7M "O3'" "C3'" SING N N 19 
O7M "C5'" "O5'" SING N N 20 
O7M "C3'" "C2'" SING N N 21 
O7M "C2'" "O2'" SING N N 22 
O7M O3P   P     DOUB N N 23 
O7M "O5'" P     SING N N 24 
O7M P     O1P   SING N N 25 
O7M P     O2P   SING N N 26 
O7M O1P   H1    SING N N 27 
O7M O2P   H2    SING N N 28 
O7M "C5'" H3    SING N N 29 
O7M "C5'" H4    SING N N 30 
O7M "C4'" H5    SING N N 31 
O7M "C3'" H6    SING N N 32 
O7M "O3'" H7    SING N N 33 
O7M "C2'" H8    SING N N 34 
O7M "O2'" H9    SING N N 35 
O7M "C1'" H10   SING N N 36 
O7M N3    H11   SING N N 37 
O7M C5    H12   SING N N 38 
O7M C8    H15   SING N N 39 
O7M C8    H16   SING N N 40 
O7M C8    H17   SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
O7M SMILES           ACDLabs              12.01 "O=C(OC)C=1N(C(=O)NC(=O)C=1)C2OC(C(O)C2O)COP(=O)(O)O"                                                                                                               
O7M InChI            InChI                1.03  "InChI=1S/C11H15N2O11P/c1-22-10(17)4-2-6(14)12-11(18)13(4)9-8(16)7(15)5(24-9)3-23-25(19,20)21/h2,5,7-9,15-16H,3H2,1H3,(H,12,14,18)(H2,19,20,21)/t5-,7-,8-,9-/m1/s1" 
O7M InChIKey         InChI                1.03  VOHILSGGFMXAFJ-ZOQUXTDFSA-N                                                                                                                                         
O7M SMILES_CANONICAL CACTVS               3.385 "COC(=O)C1=CC(=O)NC(=O)N1[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O"                                                                                              
O7M SMILES           CACTVS               3.385 "COC(=O)C1=CC(=O)NC(=O)N1[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O"                                                                                                    
O7M SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "COC(=O)C1=CC(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O"                                                                                              
O7M SMILES           "OpenEye OEToolkits" 1.7.6 "COC(=O)C1=CC(=O)NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O"                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
O7M "SYSTEMATIC NAME" ACDLabs              12.01 
;6-(methoxycarbonyl)uridine 5'-(dihydrogen phosphate)
;
O7M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "methyl 3-[(2R,3R,4S,5R)-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]-2,6-bis(oxidanylidene)pyrimidine-4-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
O7M "Create component" 2013-10-30 PDBJ 
O7M "Initial release"  2013-12-04 RCSB 
# 
