data_I6M
# 
_chem_comp.id                                    I6M 
_chem_comp.name                                  "N~1~-[(1R,2R)-2-(carbamimidamidomethyl)-5-{[(2R)-2-(hydroxymethyl)pyrrolidin-1-yl]methyl}-2,3-dihydro-1H-inden-1-yl]-N~2~-(4-chloro-3-fluorophenyl)ethanediamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H30 Cl F N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-01-18 
_chem_comp.pdbx_modified_date                    2023-01-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        516.996 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     I6M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7TJP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
I6M C10  C1  C  0 1 Y N N -24.078 6.133  -75.297 6.373  1.013  -0.848 C10  I6M 1  
I6M C15  C2  C  0 1 N N R -26.777 -1.525 -75.475 -0.841 -2.054 0.453  C15  I6M 2  
I6M C17  C3  C  0 1 Y N N -28.942 -2.064 -74.717 -2.645 -0.891 -0.552 C17  I6M 3  
I6M C20  C4  C  0 1 N N N -27.325 -2.740 -77.568 -2.368 -4.044 0.127  C20  I6M 4  
I6M C22  C5  C  0 1 N N N -25.162 -3.152 -78.737 -3.810 -5.944 -0.477 C22  I6M 5  
I6M C26  C6  C  0 1 Y N N -29.560 -2.898 -72.495 -3.728 1.083  0.275  C26  I6M 6  
I6M C02  C7  C  0 1 N N N -25.523 0.492  -75.894 1.380  -1.140 0.864  C02  I6M 7  
I6M C03  C8  C  0 1 N N N -25.282 2.005  -75.729 2.718  -0.680 0.384  C03  I6M 8  
I6M C05  C9  C  0 1 Y N N -23.869 4.007  -76.326 4.913  0.117  0.832  C05  I6M 9  
I6M C06  C10 C  0 1 Y N N -23.214 4.594  -77.393 6.007  -0.119 1.655  C06  I6M 10 
I6M C07  C11 C  0 1 Y N N -22.958 5.958  -77.405 7.276  0.221  1.230  C07  I6M 11 
I6M C08  C12 C  0 1 Y N N -23.395 6.728  -76.352 7.462  0.781  -0.022 C08  I6M 12 
I6M C12  C13 C  0 1 Y N N -24.329 4.774  -75.274 5.099  0.684  -0.422 C12  I6M 13 
I6M C16  C14 C  0 1 Y N N -27.612 -2.045 -74.318 -1.798 -0.884 0.540  C16  I6M 14 
I6M C18  C15 C  0 1 N N N -29.048 -1.588 -76.182 -2.315 -2.065 -1.448 C18  I6M 15 
I6M C19  C16 C  0 1 N N R -27.626 -1.534 -76.701 -1.474 -3.018 -0.572 C19  I6M 16 
I6M C25  C17 C  0 1 Y N N -29.919 -2.502 -73.797 -3.610 0.094  -0.682 C25  I6M 17 
I6M C27  C18 C  0 1 N N N -30.690 -3.353 -71.543 -4.779 2.153  0.129  C27  I6M 18 
I6M C29  C19 C  0 1 N N N -30.530 -4.913 -70.011 -3.204 4.002  0.181  C29  I6M 19 
I6M C30  C20 C  0 1 N N N -31.942 -4.889 -69.350 -3.345 5.487  -0.236 C30  I6M 20 
I6M C31  C21 C  0 1 N N N -32.182 -3.683 -69.064 -4.880 5.617  -0.417 C31  I6M 21 
I6M C32  C22 C  0 1 N N R -30.911 -2.775 -69.538 -5.280 4.243  -0.995 C32  I6M 22 
I6M C33  C23 C  0 1 N N N -31.352 -1.378 -70.086 -6.620 3.800  -0.404 C33  I6M 23 
I6M C35  C24 C  0 1 Y N N -28.203 -2.860 -72.089 -2.880 1.089  1.368  C35  I6M 24 
I6M C36  C25 C  0 1 Y N N -27.227 -2.423 -73.002 -1.918 0.108  1.500  C36  I6M 25 
I6M F11  F1  F  0 1 N N N -24.507 6.897  -74.258 6.556  1.565  -2.067 F11  I6M 26 
I6M N04  N1  N  0 1 N N N -24.116 2.584  -76.402 3.627  -0.217 1.265  N04  I6M 27 
I6M N14  N2  N  0 1 N N N -26.652 -0.127 -75.242 0.471  -1.603 -0.017 N14  I6M 28 
I6M N21  N3  N  0 1 N N N -26.336 -2.320 -78.542 -2.964 -4.935 -0.872 N21  I6M 29 
I6M N23  N4  N  0 1 N N N -24.144 -2.740 -79.716 -4.340 -6.736 -1.366 N23  I6M 30 
I6M N24  N5  N  0 1 N N N -25.053 -4.212 -78.055 -4.097 -6.117 0.857  N24  I6M 31 
I6M N28  N6  N  0 1 N N N -30.280 -3.485 -70.432 -4.222 3.287  -0.619 N28  I6M 32 
I6M O01  O1  O  0 1 N N N -24.803 -0.198 -76.528 1.112  -1.097 2.046  O01  I6M 33 
I6M O13  O2  O  0 1 N N N -26.036 2.659  -75.068 2.987  -0.723 -0.799 O13  I6M 34 
I6M O34  O3  O  0 1 N N N -31.150 -0.365 -69.129 -6.544 3.828  1.023  O34  I6M 35 
I6M CL09 CL1 CL 0 0 N N N -23.053 8.486  -76.387 9.060  1.194  -0.558 CL09 I6M 36 
I6M H1   H1  H  0 1 N N N -25.824 -2.060 -75.595 -0.748 -2.539 1.424  H1   I6M 37 
I6M H2   H2  H  0 1 N N N -28.239 -3.077 -78.078 -1.771 -4.631 0.826  H2   I6M 38 
I6M H3   H3  H  0 1 N N N -26.926 -3.559 -76.952 -3.159 -3.527 0.671  H3   I6M 39 
I6M H4   H4  H  0 1 N N N -22.898 3.984  -78.226 5.865  -0.560 2.631  H4   I6M 40 
I6M H5   H5  H  0 1 N N N -22.424 6.408  -78.229 8.127  0.038  1.870  H5   I6M 41 
I6M H6   H6  H  0 1 N N N -24.870 4.324  -74.455 4.250  0.869  -1.063 H6   I6M 42 
I6M H7   H7  H  0 1 N N N -29.511 -0.591 -76.229 -3.230 -2.560 -1.775 H7   I6M 43 
I6M H8   H8  H  0 1 N N N -29.645 -2.298 -76.773 -1.737 -1.732 -2.310 H8   I6M 44 
I6M H9   H9  H  0 1 N N N -27.472 -0.610 -77.278 -0.708 -3.515 -1.166 H9   I6M 45 
I6M H10  H10 H  0 1 N N N -30.956 -2.534 -74.096 -4.272 0.090  -1.535 H10  I6M 46 
I6M H11  H11 H  0 1 N N N -31.489 -2.597 -71.545 -5.636 1.749  -0.408 H11  I6M 47 
I6M H12  H12 H  0 1 N N N -31.093 -4.314 -71.895 -5.094 2.489  1.117  H12  I6M 48 
I6M H13  H13 H  0 1 N N N -30.522 -5.582 -70.884 -2.206 3.634  -0.059 H13  I6M 49 
I6M H14  H14 H  0 1 N N N -29.769 -5.243 -69.289 -3.406 3.885  1.245  H14  I6M 50 
I6M H15  H15 H  0 1 N N N -32.697 -5.271 -70.053 -2.988 6.149  0.553  H15  I6M 51 
I6M H16  H16 H  0 1 N N N -31.945 -5.504 -68.438 -2.823 5.681  -1.173 H16  I6M 52 
I6M H17  H17 H  0 1 N N N -32.327 -3.581 -67.978 -5.369 5.789  0.542  H17  I6M 53 
I6M H18  H18 H  0 1 N N N -33.091 -3.351 -69.588 -5.119 6.417  -1.118 H18  I6M 54 
I6M H19  H19 H  0 1 N N N -30.288 -2.604 -68.647 -5.356 4.305  -2.080 H19  I6M 55 
I6M H20  H20 H  0 1 N N N -30.763 -1.144 -70.985 -7.406 4.476  -0.740 H20  I6M 56 
I6M H21  H21 H  0 1 N N N -32.420 -1.416 -70.347 -6.846 2.786  -0.736 H21  I6M 57 
I6M H22  H22 H  0 1 N N N -27.922 -3.163 -71.091 -2.971 1.862  2.117  H22  I6M 58 
I6M H23  H23 H  0 1 N N N -26.190 -2.375 -72.705 -1.256 0.114  2.353  H23  I6M 59 
I6M H24  H24 H  0 1 N N N -23.491 1.995  -76.914 3.388  -0.116 2.200  H24  I6M 60 
I6M H25  H25 H  0 1 N N N -27.295 0.385  -74.672 0.686  -1.637 -0.963 H25  I6M 61 
I6M H26  H26 H  0 1 N N N -26.460 -1.478 -79.067 -2.762 -4.812 -1.813 H26  I6M 62 
I6M H27  H27 H  0 1 N N N -23.385 -3.390 -79.764 -4.937 -7.448 -1.087 H27  I6M 63 
I6M H28  H28 H  0 1 N N N -25.766 -4.460 -77.400 -3.702 -5.528 1.518  H28  I6M 64 
I6M H29  H29 H  0 1 N N N -24.254 -4.801 -78.171 -4.693 -6.829 1.136  H29  I6M 65 
I6M H31  H31 H  0 1 N N N -31.426 0.470  -69.488 -7.360 3.558  1.465  H31  I6M 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
I6M N23  C22 DOUB N N 1  
I6M C22  N21 SING N N 2  
I6M C22  N24 SING N N 3  
I6M N21  C20 SING N N 4  
I6M C20  C19 SING N N 5  
I6M C07  C06 DOUB Y N 6  
I6M C07  C08 SING Y N 7  
I6M C06  C05 SING Y N 8  
I6M C19  C18 SING N N 9  
I6M C19  C15 SING N N 10 
I6M O01  C02 DOUB N N 11 
I6M N04  C05 SING N N 12 
I6M N04  C03 SING N N 13 
I6M CL09 C08 SING N N 14 
I6M C08  C10 DOUB Y N 15 
I6M C05  C12 DOUB Y N 16 
I6M C18  C17 SING N N 17 
I6M C02  C03 SING N N 18 
I6M C02  N14 SING N N 19 
I6M C03  O13 DOUB N N 20 
I6M C15  N14 SING N N 21 
I6M C15  C16 SING N N 22 
I6M C10  C12 SING Y N 23 
I6M C10  F11 SING N N 24 
I6M C17  C16 DOUB Y N 25 
I6M C17  C25 SING Y N 26 
I6M C16  C36 SING Y N 27 
I6M C25  C26 DOUB Y N 28 
I6M C36  C35 DOUB Y N 29 
I6M C26  C35 SING Y N 30 
I6M C26  C27 SING N N 31 
I6M C27  N28 SING N N 32 
I6M N28  C29 SING N N 33 
I6M N28  C32 SING N N 34 
I6M C33  C32 SING N N 35 
I6M C33  O34 SING N N 36 
I6M C29  C30 SING N N 37 
I6M C32  C31 SING N N 38 
I6M C30  C31 SING N N 39 
I6M C15  H1  SING N N 40 
I6M C20  H2  SING N N 41 
I6M C20  H3  SING N N 42 
I6M C06  H4  SING N N 43 
I6M C07  H5  SING N N 44 
I6M C12  H6  SING N N 45 
I6M C18  H7  SING N N 46 
I6M C18  H8  SING N N 47 
I6M C19  H9  SING N N 48 
I6M C25  H10 SING N N 49 
I6M C27  H11 SING N N 50 
I6M C27  H12 SING N N 51 
I6M C29  H13 SING N N 52 
I6M C29  H14 SING N N 53 
I6M C30  H15 SING N N 54 
I6M C30  H16 SING N N 55 
I6M C31  H17 SING N N 56 
I6M C31  H18 SING N N 57 
I6M C32  H19 SING N N 58 
I6M C33  H20 SING N N 59 
I6M C33  H21 SING N N 60 
I6M C35  H22 SING N N 61 
I6M C36  H23 SING N N 62 
I6M N04  H24 SING N N 63 
I6M N14  H25 SING N N 64 
I6M N21  H26 SING N N 65 
I6M N23  H27 SING N N 66 
I6M N24  H28 SING N N 67 
I6M N24  H29 SING N N 68 
I6M O34  H31 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
I6M SMILES           ACDLabs              12.01 "Clc1ccc(cc1F)NC(=O)C(=O)NC1c2ccc(cc2CC1CNC(=N)N)CN1CCCC1CO"                                                                                                                                                                       
I6M InChI            InChI                1.03  "InChI=1S/C25H30ClFN6O3/c26-20-6-4-17(10-21(20)27)31-23(35)24(36)32-22-16(11-30-25(28)29)9-15-8-14(3-5-19(15)22)12-33-7-1-2-18(33)13-34/h3-6,8,10,16,18,22,34H,1-2,7,9,11-13H2,(H,31,35)(H,32,36)(H4,28,29,30)/t16-,18-,22-/m1/s1" 
I6M InChIKey         InChI                1.03  PDHLMXYSEXYAHU-RADWXHQJSA-N                                                                                                                                                                                                        
I6M SMILES_CANONICAL CACTVS               3.385 "NC(=N)NC[C@H]1Cc2cc(CN3CCC[C@@H]3CO)ccc2[C@@H]1NC(=O)C(=O)Nc4ccc(Cl)c(F)c4"                                                                                                                                                       
I6M SMILES           CACTVS               3.385 "NC(=N)NC[CH]1Cc2cc(CN3CCC[CH]3CO)ccc2[CH]1NC(=O)C(=O)Nc4ccc(Cl)c(F)c4"                                                                                                                                                            
I6M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NC[C@H]1Cc2cc(ccc2[C@@H]1NC(=O)C(=O)Nc3ccc(c(c3)F)Cl)CN4CCC[C@@H]4CO"                                                                                                                                                 
I6M SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1CN3CCCC3CO)CC(C2NC(=O)C(=O)Nc4ccc(c(c4)F)Cl)CNC(=N)N"                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
I6M "SYSTEMATIC NAME" ACDLabs              12.01 "N~1~-[(1R,2R)-2-(carbamimidamidomethyl)-5-{[(2R)-2-(hydroxymethyl)pyrrolidin-1-yl]methyl}-2,3-dihydro-1H-inden-1-yl]-N~2~-(4-chloro-3-fluorophenyl)ethanediamide"                     
I6M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}'-[(1~{R},2~{R})-2-(carbamimidamidomethyl)-5-[[(2~{R})-2-(hydroxymethyl)pyrrolidin-1-yl]methyl]-2,3-dihydro-1~{H}-inden-1-yl]-~{N}-(4-chloranyl-3-fluoranyl-phenyl)ethanediamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
I6M "Create component" 2022-01-18 RCSB 
I6M "Initial release"  2023-01-25 RCSB 
# 
