data_I0M
# 
_chem_comp.id                                    I0M 
_chem_comp.name                                  "2-[(3S)-1-[[2-[3,5-bis(chloranyl)phenyl]-6-[2-(4-methylpiperazin-4-ium-1-yl)pyrimidin-5-yl]oxy-pyridin-4-yl]methyl]pyrrolidin-1-ium-3-yl]oxyethanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H32 Cl2 N6 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    2 
_chem_comp.pdbx_initial_date                     2022-02-08 
_chem_comp.pdbx_modified_date                    2022-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        575.487 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     I0M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7QXZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
I0M N1   N1  N  0 1 Y N N 48.632 -33.317 -4.265  -0.614  0.343  -1.629 N1   I0M 1  
I0M C4   C1  C  0 1 Y N N 49.765 -33.687 -1.754  2.009   -0.403 -1.937 C4   I0M 2  
I0M C5   C2  C  0 1 Y N N 48.556 -33.035 -1.893  1.686   0.830  -1.393 C5   I0M 3  
I0M C6   C3  C  0 1 Y N N 47.997 -32.896 -3.156  0.346   1.179  -1.250 C6   I0M 4  
I0M C7   C4  C  0 1 Y N N 46.713 -32.185 -3.361  -0.013  2.496  -0.670 C7   I0M 5  
I0M C8   C5  C  0 1 Y N N 46.351 -31.135 -2.515  -1.328  2.952  -0.732 C8   I0M 6  
I0M C10  C6  C  0 1 Y N N 44.376 -30.708 -3.832  -0.683  4.955  0.414  C10  I0M 7  
I0M C15  C7  C  0 1 N N N 50.413 -33.804 -0.417  3.449   -0.815 -2.107 C15  I0M 8  
I0M C21  C8  C  0 1 Y N N 48.941 -34.765 -8.879  -4.476  -2.084 -0.004 C21  I0M 9  
I0M C26  C9  C  0 1 N N N 49.277 -35.413 -12.385 -7.758  -3.212 1.250  C26  I0M 10 
I0M C28  C10 C  0 1 N N N 47.426 -36.704 -11.451 -7.213  -1.110 2.270  C28  I0M 11 
I0M C11  C11 C  0 1 Y N N 44.768 -31.720 -4.683  0.623   4.504  0.484  C11  I0M 12 
I0M C12  C12 C  0 1 Y N N 45.913 -32.461 -4.468  0.963   3.278  -0.056 C12  I0M 13 
I0M C18  C13 C  0 1 Y N N 49.944 -34.518 -6.430  -2.401  -1.804 -1.675 C18  I0M 14 
I0M C19  C14 C  0 1 Y N N 48.792 -35.233 -6.671  -3.524  -2.533 -2.051 C19  I0M 15 
I0M C2   C15 C  0 1 Y N N 49.809 -33.917 -4.107  -0.336  -0.839 -2.150 C2   I0M 16 
I0M C23  C16 C  0 1 Y N N 50.560 -33.956 -7.521  -2.381  -1.223 -0.412 C23  I0M 17 
I0M C25  C17 C  0 1 N N N 49.070 -34.336 -11.329 -6.617  -3.032 0.246  C25  I0M 18 
I0M C29  C18 C  0 1 N N N 47.193 -35.636 -10.410 -6.068  -0.912 1.275  C29  I0M 19 
I0M C3   C19 C  0 1 Y N N 50.421 -34.119 -2.890  0.982   -1.248 -2.320 C3   I0M 20 
I0M C30  C20 C  0 1 N N N 48.133 -37.102 -13.780 -9.388  -2.070 2.588  C30  I0M 21 
I0M C31  C21 C  0 1 N N N 51.628 -32.469 1.359   5.316   -1.951 -1.048 C31  I0M 22 
I0M C32  C22 C  0 1 N N S 52.507 -31.188 1.320   5.828   -2.129 0.398  C32  I0M 23 
I0M C33  C23 C  0 1 N N N 52.988 -31.069 -0.113  4.924   -1.223 1.258  C33  I0M 24 
I0M C34  C24 C  0 1 N N N 52.297 -32.200 -0.863  3.941   -0.573 0.260  C34  I0M 25 
I0M C36  C25 C  0 1 N N N 54.463 -30.217 2.304   7.943   -2.405 1.493  C36  I0M 26 
I0M C37  C26 C  0 1 N N N 54.966 -30.035 3.691   9.356   -1.884 1.510  C37  I0M 27 
I0M C9   C27 C  0 1 Y N N 45.188 -30.437 -2.752  -1.657  4.179  -0.190 C9   I0M 28 
I0M N16  N2  N  1 1 N N N 51.101 -32.526 -0.033  3.905   -1.510 -0.896 N16  I0M 29 
I0M N20  N3  N  0 1 Y N N 48.267 -35.359 -7.888  -4.530  -2.650 -1.200 N20  I0M 30 
I0M N22  N4  N  0 1 Y N N 50.064 -34.052 -8.755  -3.423  -1.382 0.387  N22  I0M 31 
I0M N24  N5  N  0 1 N N N 48.433 -34.902 -10.132 -5.552  -2.224 0.859  N24  I0M 32 
I0M N27  N6  N  1 1 N N N 47.982 -36.093 -12.694 -8.281  -1.895 1.638  N27  I0M 33 
I0M O17  O1  O  0 1 N N N 50.513 -34.402 -5.166  -1.347  -1.662 -2.523 O17  I0M 34 
I0M O35  O2  O  0 1 N N N 53.644 -31.378 2.155   7.190   -1.709 0.497  O35  I0M 35 
I0M O38  O3  O  0 1 N N N 55.180 -28.827 4.031   9.686   -1.007 0.748  O38  I0M 36 
I0M O39  O4  O  0 1 N N N 55.147 -31.066 4.409   10.250  -2.395 2.372  O39  I0M 37 
I0M CL13 CL1 CL 0 0 N N N 43.768 -32.099 -6.050  1.838   5.480  1.249  CL13 I0M 38 
I0M CL14 CL2 CL 0 0 N N N 44.733 -29.169 -1.655  -3.294  4.752  -0.273 CL14 I0M 39 
I0M H41  H1  H  0 1 N N N 48.049 -32.636 -1.026  2.464   1.512  -1.084 H41  I0M 40 
I0M H42  H2  H  0 1 N N N 46.981 -30.871 -1.678  -2.089  2.348  -1.204 H42  I0M 41 
I0M H43  H3  H  0 1 N N N 43.468 -30.150 -4.005  -0.945  5.914  0.837  H43  I0M 42 
I0M H45  H4  H  0 1 N N N 49.645 -34.038 0.335   3.537   -1.483 -2.964 H45  I0M 43 
I0M H46  H5  H  0 1 N N N 51.155 -34.616 -0.448  4.063   0.070  -2.271 H46  I0M 44 
I0M H53  H6  H  0 1 N N N 49.996 -36.156 -12.010 -8.554  -3.799 0.793  H53  I0M 45 
I0M H52  H7  H  0 1 N N N 49.672 -34.951 -13.302 -7.386  -3.730 2.134  H52  I0M 46 
I0M H55  H8  H  0 1 N N N 46.472 -37.200 -11.684 -6.844  -1.639 3.149  H55  I0M 47 
I0M H56  H9  H  0 1 N N N 48.138 -37.445 -11.059 -7.606  -0.138 2.570  H56  I0M 48 
I0M H44  H10 H  0 1 N N N 46.187 -33.249 -5.153  1.982   2.927  -0.001 H44  I0M 49 
I0M H48  H11 H  0 1 N N N 48.295 -35.711 -5.840  -3.574  -2.997 -3.025 H48  I0M 50 
I0M H49  H12 H  0 1 N N N 51.483 -33.415 -7.374  -1.525  -0.650 -0.087 H49  I0M 51 
I0M H51  H13 H  0 1 N N N 50.045 -33.909 -11.052 -6.218  -4.008 -0.031 H51  I0M 52 
I0M H50  H14 H  0 1 N N N 48.427 -33.544 -11.741 -6.991  -2.525 -0.643 H50  I0M 53 
I0M H58  H15 H  0 1 N N N 46.432 -34.932 -10.779 -6.433  -0.371 0.403  H58  I0M 54 
I0M H57  H16 H  0 1 N N N 46.837 -36.108 -9.482  -5.269  -0.341 1.749  H57  I0M 55 
I0M H40  H17 H  0 1 N N N 51.385 -34.601 -2.826  1.202   -2.216 -2.748 H40  I0M 56 
I0M H61  H18 H  0 1 N N N 47.161 -37.578 -13.977 -9.028  -2.594 3.473  H61  I0M 57 
I0M H59  H19 H  0 1 N N N 48.490 -36.606 -14.695 -9.776  -1.093 2.876  H59  I0M 58 
I0M H60  H20 H  0 1 N N N 48.860 -37.867 -13.471 -10.181 -2.652 2.118  H60  I0M 59 
I0M H62  H21 H  0 1 N N N 50.813 -32.372 2.091   5.898   -1.190 -1.566 H62  I0M 60 
I0M H63  H22 H  0 1 N N N 52.229 -33.359 1.595   5.363   -2.898 -1.587 H63  I0M 61 
I0M H64  H23 H  0 1 N N N 51.916 -30.307 1.611   5.730   -3.169 0.709  H64  I0M 62 
I0M H66  H24 H  0 1 N N N 54.081 -31.184 -0.164  4.380   -1.818 1.992  H66  I0M 63 
I0M H65  H25 H  0 1 N N N 52.702 -30.095 -0.536  5.519   -0.458 1.758  H65  I0M 64 
I0M H68  H26 H  0 1 N N N 51.994 -31.871 -1.868  2.951   -0.483 0.706  H68  I0M 65 
I0M H67  H27 H  0 1 N N N 52.961 -33.073 -0.947  4.308   0.403  -0.054 H67  I0M 66 
I0M H69  H28 H  0 1 N N N 55.326 -30.307 1.627   7.951   -3.471 1.263  H69  I0M 67 
I0M H70  H29 H  0 1 N N N 53.871 -29.332 2.027   7.485   -2.248 2.470  H70  I0M 68 
I0M H47  H30 H  0 1 N N N 50.442 -31.782 -0.141  3.307   -2.297 -0.694 H47  I0M 69 
I0M H54  H31 H  0 1 N N N 47.337 -35.396 -13.009 -8.614  -1.411 0.818  H54  I0M 70 
I0M H1   H32 H  0 1 N N N 55.474 -30.805 5.262   11.144  -2.029 2.345  H1   I0M 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
I0M C30  N27  SING N N 1  
I0M N27  C26  SING N N 2  
I0M N27  C28  SING N N 3  
I0M C26  C25  SING N N 4  
I0M C28  C29  SING N N 5  
I0M C25  N24  SING N N 6  
I0M C29  N24  SING N N 7  
I0M N24  C21  SING N N 8  
I0M C21  N22  DOUB Y N 9  
I0M C21  N20  SING Y N 10 
I0M N22  C23  SING Y N 11 
I0M N20  C19  DOUB Y N 12 
I0M C23  C18  DOUB Y N 13 
I0M C19  C18  SING Y N 14 
I0M C18  O17  SING N N 15 
I0M CL13 C11  SING N N 16 
I0M O17  C2   SING N N 17 
I0M C11  C12  DOUB Y N 18 
I0M C11  C10  SING Y N 19 
I0M C12  C7   SING Y N 20 
I0M N1   C2   DOUB Y N 21 
I0M N1   C6   SING Y N 22 
I0M C2   C3   SING Y N 23 
I0M C10  C9   DOUB Y N 24 
I0M C7   C6   SING N N 25 
I0M C7   C8   DOUB Y N 26 
I0M C6   C5   DOUB Y N 27 
I0M C3   C4   DOUB Y N 28 
I0M C9   C8   SING Y N 29 
I0M C9   CL14 SING N N 30 
I0M C5   C4   SING Y N 31 
I0M C4   C15  SING N N 32 
I0M C34  C33  SING N N 33 
I0M C34  N16  SING N N 34 
I0M C15  N16  SING N N 35 
I0M C33  C32  SING N N 36 
I0M N16  C31  SING N N 37 
I0M C32  C31  SING N N 38 
I0M C32  O35  SING N N 39 
I0M O35  C36  SING N N 40 
I0M C36  C37  SING N N 41 
I0M C37  O38  DOUB N N 42 
I0M C37  O39  SING N N 43 
I0M C5   H41  SING N N 44 
I0M C8   H42  SING N N 45 
I0M C10  H43  SING N N 46 
I0M C15  H45  SING N N 47 
I0M C15  H46  SING N N 48 
I0M C26  H53  SING N N 49 
I0M C26  H52  SING N N 50 
I0M C28  H55  SING N N 51 
I0M C28  H56  SING N N 52 
I0M C12  H44  SING N N 53 
I0M C19  H48  SING N N 54 
I0M C23  H49  SING N N 55 
I0M C25  H51  SING N N 56 
I0M C25  H50  SING N N 57 
I0M C29  H58  SING N N 58 
I0M C29  H57  SING N N 59 
I0M C3   H40  SING N N 60 
I0M C30  H61  SING N N 61 
I0M C30  H59  SING N N 62 
I0M C30  H60  SING N N 63 
I0M C31  H62  SING N N 64 
I0M C31  H63  SING N N 65 
I0M C32  H64  SING N N 66 
I0M C33  H66  SING N N 67 
I0M C33  H65  SING N N 68 
I0M C34  H68  SING N N 69 
I0M C34  H67  SING N N 70 
I0M C36  H69  SING N N 71 
I0M C36  H70  SING N N 72 
I0M N16  H47  SING N N 73 
I0M N27  H54  SING N N 74 
I0M O39  H1   SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
I0M InChI            InChI                1.06  "InChI=1S/C27H30Cl2N6O4/c1-33-4-6-35(7-5-33)27-30-13-23(14-31-27)39-25-9-18(15-34-3-2-22(16-34)38-17-26(36)37)8-24(32-25)19-10-20(28)12-21(29)11-19/h8-14,22H,2-7,15-17H2,1H3,(H,36,37)/p+2/t22-/m0/s1" 
I0M InChIKey         InChI                1.06  NPVPASPENGAFSC-QFIPXVFZSA-P                                                                                                                                                                             
I0M SMILES_CANONICAL CACTVS               3.385 "C[NH+]1CCN(CC1)c2ncc(Oc3cc(C[NH+]4CC[C@@H](C4)OCC(O)=O)cc(n3)c5cc(Cl)cc(Cl)c5)cn2"                                                                                                                     
I0M SMILES           CACTVS               3.385 "C[NH+]1CCN(CC1)c2ncc(Oc3cc(C[NH+]4CC[CH](C4)OCC(O)=O)cc(n3)c5cc(Cl)cc(Cl)c5)cn2"                                                                                                                       
I0M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[NH+]1CCN(CC1)c2ncc(cn2)Oc3cc(cc(n3)c4cc(cc(c4)Cl)Cl)C[NH+]5CC[C@@H](C5)OCC(=O)O"                                                                                                                     
I0M SMILES           "OpenEye OEToolkits" 2.0.7 "C[NH+]1CCN(CC1)c2ncc(cn2)Oc3cc(cc(n3)c4cc(cc(c4)Cl)Cl)C[NH+]5CCC(C5)OCC(=O)O"                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           I0M 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[(3~{S})-1-[[2-[3,5-bis(chloranyl)phenyl]-6-[2-(4-methylpiperazin-4-ium-1-yl)pyrimidin-5-yl]oxy-pyridin-4-yl]methyl]pyrrolidin-1-ium-3-yl]oxyethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
I0M "Create component"  2022-02-08 PDBE 
I0M "Initial release"   2022-04-13 RCSB 
I0M "Modify descriptor" 2022-08-22 RCSB 
# 
