data_G1M
# 
_chem_comp.id                                    G1M 
_chem_comp.name                                  "2'-deoxy-5'-O-[(R)-hydroxy({(S)-hydroxy[(1R)-1-phosphonoethyl]phosphoryl}oxy)phosphoryl]guanosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H20 N5 O12 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-09-14 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        519.235 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     G1M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3JPP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
G1M N1     N1     N 0 1 N N N 9.696  8.878  8.100  -8.088 1.923  0.180  N1     G1M 1  
G1M C2     C2     C 0 1 N N N 8.434  8.963  7.564  -7.524 1.447  1.326  C2     G1M 2  
G1M N2     N2     N 0 1 N N N 8.341  9.509  6.340  -8.187 1.616  2.515  N2     G1M 3  
G1M N3     N3     N 0 1 N N N 7.341  8.553  8.184  -6.364 0.830  1.324  N3     G1M 4  
G1M C4     C4     C 0 1 Y N N 7.611  8.068  9.412  -5.682 0.642  0.188  C4     G1M 5  
G1M C5     C5     C 0 1 Y N N 8.830  7.956  10.046 -6.208 1.109  -1.022 C5     G1M 6  
G1M C6     C6     C 0 1 N N N 9.997  8.373  9.360  -7.458 1.771  -1.006 C6     G1M 7  
G1M O6     O6     O 0 1 N N N 11.171 8.325  9.741  -7.954 2.193  -2.036 O6     G1M 8  
G1M N7     N7     N 0 1 Y N N 8.678  7.416  11.316 -5.322 0.788  -1.996 N7     G1M 9  
G1M C8     C8     C 0 1 Y N N 7.395  7.201  11.423 -4.308 0.167  -1.469 C8     G1M 10 
G1M N9     N9     N 0 1 Y N N 6.693  7.559  10.296 -4.485 0.054  -0.120 N9     G1M 11 
G1M PA     PA     P 0 1 N N N 4.972  5.038  14.688 2.027  -1.386 -0.794 PA     G1M 12 
G1M PB     PB     P 0 1 N N N 3.934  2.712  13.754 4.639  -0.049 -0.376 PB     G1M 13 
G1M PG     PG     P 0 1 N N N 3.835  1.215  16.575 6.930  1.470  0.767  PG     G1M 14 
G1M "C1'"  "C1'"  C 0 1 N N R 5.263  7.402  10.052 -3.563 -0.582 0.825  "C1'"  G1M 15 
G1M O1A    O1A    O 0 1 N N N 3.658  4.970  15.796 1.762  -1.132 -2.362 O1A    G1M 16 
G1M O1B    O1B    O 0 1 N N N 4.021  2.032  12.177 5.022  0.127  -1.929 O1B    G1M 17 
G1M O1G    O1G    O 0 1 N N N 3.385  2.813  17.026 7.356  2.793  1.578  O1G    G1M 18 
G1M "C2'"  "C2'"  C 0 1 N N N 4.895  5.977  9.624  -3.984 -2.045 1.063  "C2'"  G1M 19 
G1M O2A    O2A    O 0 1 N N N 6.355  5.162  15.213 2.608  -2.734 -0.604 O2A    G1M 20 
G1M O2B    O2B    O 0 1 N N N 2.614  3.124  14.298 5.355  -1.220 0.179  O2B    G1M 21 
G1M O2G    O2G    O 0 1 N N N 4.921  0.324  17.567 7.383  0.164  1.593  O2G    G1M 22 
G1M "C3'"  "C3'"  C 0 1 N N S 4.411  5.363  10.922 -2.743 -2.870 0.640  "C3'"  G1M 23 
G1M "O3'"  "O3'"  O 0 1 N N N 3.491  4.293  10.678 -2.515 -3.949 1.548  "O3'"  G1M 24 
G1M O3A    O3A    O 0 1 N N N 4.914  3.845  13.775 3.051  -0.276 -0.237 O3A    G1M 25 
G1M C3B    C3B    C 0 1 N N R 4.663  1.413  14.902 5.121  1.450  0.543  C3B    G1M 26 
G1M C3B2   2C3B   C 0 0 N N N 4.536  0.072  14.198 4.690  2.690  -0.242 2C3B   G1M 27 
G1M O3G    O3G    O 0 1 N N N 2.600  0.416  16.388 7.591  1.469  -0.558 O3G    G1M 28 
G1M "C4'"  "C4'"  C 0 1 N N R 3.707  6.550  11.566 -1.608 -1.819 0.733  "C4'"  G1M 29 
G1M "O4'"  "O4'"  O 0 1 N N N 4.570  7.666  11.270 -2.236 -0.603 0.273  "O4'"  G1M 30 
G1M "C5'"  "C5'"  C 0 1 N N N 3.467  6.444  13.053 -0.443 -2.203 -0.182 "C5'"  G1M 31 
G1M "O5'"  "O5'"  O 0 1 N N N 4.703  6.305  13.757 0.635  -1.284 0.009  "O5'"  G1M 32 
G1M HN1    HN1    H 0 1 N N N 10.458 9.205  7.540  -8.948 2.371  0.215  HN1    G1M 33 
G1M HN2    HN2    H 0 1 N N N 7.447  9.604  5.901  -9.045 2.069  2.532  HN2    G1M 34 
G1M HN2A   HN2A   H 0 0 N N N 9.165  9.820  5.867  -7.799 1.282  3.339  HN2A   G1M 35 
G1M H8     H8     H 0 1 N N N 6.932  6.785  12.306 -3.453 -0.202 -2.016 H8     G1M 36 
G1M "H1'"  "H1'"  H 0 1 N N N 4.987  8.095  9.244  -3.566 -0.037 1.769  "H1'"  G1M 37 
G1M "H2'"  "H2'"  H 0 1 N N N 4.113  5.970  8.850  -4.211 -2.210 2.116  "H2'"  G1M 38 
G1M "H2'A" "H2'A" H 0 0 N N N 5.759  5.436  9.211  -4.842 -2.302 0.442  "H2'A" G1M 39 
G1M "H3'"  "H3'"  H 0 1 N N N 5.209  4.919  11.536 -2.851 -3.238 -0.380 "H3'"  G1M 40 
G1M "HO3'" "HO3'" H 0 0 N N N 3.204  3.927  11.506 -3.241 -4.587 1.592  "HO3'" G1M 41 
G1M H3B    H3B    H 0 1 N N N 5.691  1.748  15.107 4.634  1.450  1.519  H3B    G1M 42 
G1M HC3B   HC3B   H 0 0 N N N 4.953  -0.720 14.838 3.609  2.678  -0.376 HC3B   G1M 43 
G1M HC3A   HC3A   H 0 0 N N N 3.475  -0.138 13.999 4.979  3.586  0.307  HC3A   G1M 44 
G1M HC3C   HC3C   H 0 0 N N N 5.089  0.103  13.247 5.177  2.689  -1.218 HC3C   G1M 45 
G1M "H4'"  "H4'"  H 0 1 N N N 2.687  6.635  11.163 -1.269 -1.710 1.763  "H4'"  G1M 46 
G1M "H5'"  "H5'"  H 0 1 N N N 2.957  7.355  13.400 -0.108 -3.211 0.060  "H5'"  G1M 47 
G1M "H5'A" "H5'A" H 0 0 N N N 2.839  5.563  13.253 -0.770 -2.168 -1.221 "H5'A" G1M 48 
G1M H17    H17    H 0 1 N N N 3.031  4.319  15.504 1.380  -0.266 -2.561 H17    G1M 49 
G1M H18    H18    H 0 1 N N N 3.150  1.992  11.800 4.588  0.877  -2.359 H18    G1M 50 
G1M H19    H19    H 0 1 N N N 2.438  2.876  17.068 8.307  2.870  1.734  H19    G1M 51 
G1M H20    H20    H 0 1 N N N 4.525  -0.506 17.805 6.988  0.099  2.473  H20    G1M 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
G1M N1    C2     SING N N 1  
G1M N1    C6     SING N N 2  
G1M N1    HN1    SING N N 3  
G1M C2    N2     SING N N 4  
G1M C2    N3     DOUB N N 5  
G1M N2    HN2    SING N N 6  
G1M N2    HN2A   SING N N 7  
G1M N3    C4     SING N N 8  
G1M C4    C5     DOUB Y N 9  
G1M C4    N9     SING Y N 10 
G1M C5    C6     SING N N 11 
G1M C5    N7     SING Y N 12 
G1M C6    O6     DOUB N N 13 
G1M N7    C8     DOUB Y N 14 
G1M C8    N9     SING Y N 15 
G1M C8    H8     SING N N 16 
G1M N9    "C1'"  SING N N 17 
G1M PA    O1A    SING N N 18 
G1M PA    O2A    DOUB N N 19 
G1M PA    O3A    SING N N 20 
G1M PA    "O5'"  SING N N 21 
G1M PB    O1B    SING N N 22 
G1M PB    O2B    DOUB N N 23 
G1M PB    O3A    SING N N 24 
G1M PB    C3B    SING N N 25 
G1M PG    O1G    SING N N 26 
G1M PG    O2G    SING N N 27 
G1M PG    C3B    SING N N 28 
G1M PG    O3G    DOUB N N 29 
G1M "C1'" "C2'"  SING N N 30 
G1M "C1'" "O4'"  SING N N 31 
G1M "C1'" "H1'"  SING N N 32 
G1M "C2'" "C3'"  SING N N 33 
G1M "C2'" "H2'"  SING N N 34 
G1M "C2'" "H2'A" SING N N 35 
G1M "C3'" "O3'"  SING N N 36 
G1M "C3'" "C4'"  SING N N 37 
G1M "C3'" "H3'"  SING N N 38 
G1M "O3'" "HO3'" SING N N 39 
G1M C3B   C3B2   SING N N 40 
G1M C3B   H3B    SING N N 41 
G1M C3B2  HC3B   SING N N 42 
G1M C3B2  HC3A   SING N N 43 
G1M C3B2  HC3C   SING N N 44 
G1M "C4'" "O4'"  SING N N 45 
G1M "C4'" "C5'"  SING N N 46 
G1M "C4'" "H4'"  SING N N 47 
G1M "C5'" "O5'"  SING N N 48 
G1M "C5'" "H5'"  SING N N 49 
G1M "C5'" "H5'A" SING N N 50 
G1M O1A   H17    SING N N 51 
G1M O1B   H18    SING N N 52 
G1M O1G   H19    SING N N 53 
G1M O2G   H20    SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
G1M SMILES           ACDLabs              11.02 "O=P(O)(O)C(C)P(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)CC3O"                                                                                                                                               
G1M SMILES_CANONICAL CACTVS               3.352 "C[C@H]([P](O)(O)=O)[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H](C[C@@H]1O)n2cnc3C(=O)NC(=Nc23)N"                                                                                                                      
G1M SMILES           CACTVS               3.352 "C[CH]([P](O)(O)=O)[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH](C[CH]1O)n2cnc3C(=O)NC(=Nc23)N"                                                                                                                           
G1M SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@@H]([P@](=O)(O)O[P@](=O)(O)OC[C@@H]1[C@H](C[C@@H](O1)n2cnc3c2N=C(NC3=O)N)O)P(=O)(O)O"                                                                                                                    
G1M SMILES           "OpenEye OEToolkits" 1.7.0 "CC(P(=O)(O)O)P(=O)(O)OP(=O)(O)OCC1C(CC(O1)n2cnc3c2N=C(NC3=O)N)O"                                                                                                                                             
G1M InChI            InChI                1.03  "InChI=1S/C12H20N5O12P3/c1-5(30(20,21)22)31(23,24)29-32(25,26)27-3-7-6(18)2-8(28-7)17-4-14-9-10(17)15-12(13)16-11(9)19/h4-8,18H,2-3H2,1H3,(H,23,24)(H,25,26)(H2,20,21,22)(H3,13,15,16,19)/t5-,6+,7-,8-/m1/s1" 
G1M InChIKey         InChI                1.03  KAYWITWNVLLSPS-ULAWRXDQSA-N                                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
G1M "SYSTEMATIC NAME" ACDLabs              11.02 "2'-deoxy-5'-O-[(R)-hydroxy({(S)-hydroxy[(1R)-1-phosphonoethyl]phosphoryl}oxy)phosphoryl]guanosine"                                                    
G1M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(1R)-1-[[[(2R,3S,5R)-5-(2-azanyl-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]ethyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
G1M "Create component"  2009-09-14 RCSB 
G1M "Modify descriptor" 2011-06-04 RCSB 
# 
