data_E6M
#

_chem_comp.id                                   E6M
_chem_comp.name                                 "(10R,12S)-12-[(1R)-1-hydroxy-2-({[3-(propan-2-yl)phenyl]methyl}amino)ethyl]-17-(methoxymethyl)-10-methyl-2,13-diazabicyclo[13.3.1]nonadeca-1(19),15,17-trien-14-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C32 H49 N3 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-12-04
_chem_comp.pdbx_modified_date                   2020-05-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       523.750
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    E6M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5QD3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
E6M  C3   C1   C  0  1  N  N  S  31.602   6.056  14.639    0.300  -1.037  -2.114  C3   E6M   1  
E6M  C5   C2   C  0  1  N  N  N  32.618   7.007  15.257    0.527  -2.536  -1.971  C5   E6M   2  
E6M  C8   C3   C  0  1  N  N  R  31.983   8.319  15.727    0.701  -3.021  -0.537  C8   E6M   3  
E6M  C10  C4   C  0  1  N  N  N  32.836   9.000  16.795    1.339  -4.416  -0.575  C10  E6M   4  
E6M  C13  C5   C  0  1  N  N  N  32.301  10.335  17.305    1.928  -4.819   0.773  C13  E6M   5  
E6M  C16  C6   C  0  1  N  N  N  31.146  10.218  18.290    3.451  -4.696   0.738  C16  E6M   6  
E6M  C19  C7   C  0  1  N  N  N  31.459   9.389  19.548    3.942  -3.924   1.964  C19  E6M   7  
E6M  C22  C8   C  0  1  N  N  N  30.321   9.405  20.569    5.264  -3.228   1.623  C22  E6M   8  
E6M  C25  C9   C  0  1  N  N  N  29.030   8.812  20.020    5.081  -1.710   1.741  C25  E6M   9  
E6M  C28  C10  C  0  1  N  N  N  28.960   7.256  20.155    5.677  -1.028   0.513  C28  E6M  10  
E6M  C33  C11  C  0  1  Y  N  N  27.396   6.431  18.392    4.825   1.264   0.186  C33  E6M  11  
E6M  C34  C12  C  0  1  Y  N  N  28.395   6.448  17.415    3.743   0.744  -0.497  C34  E6M  12  
E6M  C36  C13  C  0  1  Y  N  N  28.089   6.143  16.082    2.770   1.597  -1.028  C36  E6M  13  
E6M  C37  C14  C  0  1  Y  N  N  26.772   5.844  15.725    2.908   2.976  -0.887  C37  E6M  14  
E6M  C39  C15  C  0  1  Y  N  N  25.757   5.816  16.702    4.000   3.491  -0.215  C39  E6M  15  
E6M  C40  C16  C  0  1  Y  N  N  26.086   6.113  18.028    4.954   2.645   0.322  C40  E6M  16  
E6M  C42  C17  C  0  1  N  N  N  24.310   5.476  16.322    4.153   4.984  -0.068  C42  E6M  17  
E6M  C46  C18  C  0  1  N  N  N  22.996   3.875  17.585    3.597   6.819   1.370  C46  E6M  18  
E6M  C50  C19  C  0  1  N  N  N  29.190   6.178  15.057    1.593   1.020  -1.724  C50  E6M  19  
E6M  C52  C20  C  0  1  N  N  N  31.724   9.248  14.539    1.584  -2.084   0.280  C52  E6M  20  
E6M  C56  C21  C  0  1  N  N  R  32.243   4.684  14.413   -0.801  -0.550  -1.177  C56  E6M  21  
E6M  C60  C22  C  0  1  N  N  N  31.337   3.706  13.652   -2.122  -1.225  -1.548  C60  E6M  22  
E6M  C65  C23  C  0  1  N  N  N  31.515   1.663  12.304   -4.471  -1.378  -0.979  C65  E6M  23  
E6M  C68  C24  C  0  1  Y  N  N  31.378   2.358  10.967   -5.534  -0.865  -0.041  C68  E6M  24  
E6M  C69  C25  C  0  1  Y  N  N  32.505   2.701  10.224   -6.263   0.261  -0.373  C69  E6M  25  
E6M  C71  C26  C  0  1  Y  N  N  32.403   3.355   8.998   -7.237   0.731   0.488  C71  E6M  26  
E6M  C72  C27  C  0  1  Y  N  N  31.145   3.657   8.509   -7.483   0.075   1.679  C72  E6M  27  
E6M  C74  C28  C  0  1  Y  N  N  30.008   3.325   9.232   -6.753  -1.052   2.010  C74  E6M  28  
E6M  C76  C29  C  0  1  Y  N  N  30.121   2.683  10.453   -5.782  -1.525   1.148  C76  E6M  29  
E6M  C78  C30  C  0  1  N  N  N  33.644   3.711   8.195   -8.032   1.960   0.127  C78  E6M  30  
E6M  C80  C31  C  0  1  N  N  N  34.089   5.151   8.423   -9.518   1.602   0.053  C80  E6M  31  
E6M  C84  C32  C  0  1  N  N  N  34.794   2.747   8.477   -7.819   3.036   1.194  C84  E6M  32  
E6M  N1   N1   N  0  1  N  N  N  30.437   5.986  15.504    1.569  -0.325  -1.908  N1   E6M  33  
E6M  N31  N2   N  0  1  N  N  N  27.694   6.725  19.717    5.813   0.426   0.751  N31  E6M  34  
E6M  N63  N3   N  0  1  N  N  N  32.141   2.514  13.327   -3.184  -0.749  -0.652  N63  E6M  35  
E6M  O45  O1   O  0  1  N  N  N  24.011   4.080  16.570    3.511   5.412   1.134  O45  E6M  36  
E6M  O51  O2   O  0  1  N  N  N  28.950   6.372  13.870    0.712   1.750  -2.132  O51  E6M  37  
E6M  O58  O3   O  0  1  N  N  N  33.459   4.864  13.677   -0.459  -0.879   0.171  O58  E6M  38  
E6M  H1   H1   H  0  1  N  N  N  31.302   6.460  13.661   -0.034  -0.843  -3.151  H1   E6M  39  
E6M  H2   H2   H  0  1  N  N  N  33.085   6.512  16.121   -0.326  -3.064  -2.419  H2   E6M  40  
E6M  H3   H3   H  0  1  N  N  N  33.388   7.237  14.506    1.418  -2.814  -2.549  H3   E6M  41  
E6M  H4   H4   H  0  1  N  N  N  31.010   8.076  16.180   -0.279  -3.106  -0.058  H4   E6M  42  
E6M  H5   H5   H  0  1  N  N  N  32.916   8.316  17.653    0.578  -5.142  -0.870  H5   E6M  43  
E6M  H6   H6   H  0  1  N  N  N  33.836   9.175  16.371    2.129  -4.419  -1.331  H6   E6M  44  
E6M  H7   H7   H  0  1  N  N  N  33.125  10.867  17.803    1.511  -4.245   1.590  H7   E6M  45  
E6M  H8   H8   H  0  1  N  N  N  31.956  10.920  16.440    1.679  -5.877   0.953  H8   E6M  46  
E6M  H9   H9   H  0  1  N  N  N  30.863  11.232  18.609    3.894  -5.695   0.741  H9   E6M  47  
E6M  H10  H10  H  0  1  N  N  N  30.298   9.747  17.771    3.757  -4.175  -0.169  H10  E6M  48  
E6M  H11  H11  H  0  1  N  N  N  31.644   8.348  19.245    3.202  -3.187   2.267  H11  E6M  49  
E6M  H12  H12  H  0  1  N  N  N  32.362   9.799  20.023    4.107  -4.623   2.788  H12  E6M  50  
E6M  H13  H13  H  0  1  N  N  N  30.630   8.822  21.449    6.038  -3.557   2.319  H13  E6M  51  
E6M  H14  H14  H  0  1  N  N  N  30.131  10.446  20.868    5.561  -3.483   0.606  H14  E6M  52  
E6M  H15  H15  H  0  1  N  N  N  28.950   9.074  18.955    4.023  -1.467   1.818  H15  E6M  53  
E6M  H16  H16  H  0  1  N  N  N  28.183   9.249  20.570    5.598  -1.354   2.635  H16  E6M  54  
E6M  H17  H17  H  0  1  N  N  N  29.111   6.985  21.210    6.672  -1.451   0.328  H17  E6M  55  
E6M  H18  H18  H  0  1  N  N  N  29.760   6.812  19.545    5.058  -1.224  -0.357  H18  E6M  56  
E6M  H19  H19  H  0  1  N  N  N  29.409   6.698  17.689    3.634  -0.322  -0.623  H19  E6M  57  
E6M  H20  H20  H  0  1  N  N  N  26.530   5.633  14.694    2.166   3.643  -1.301  H20  E6M  58  
E6M  H21  H21  H  0  1  N  N  N  25.314   6.096  18.783    5.804   3.052   0.850  H21  E6M  59  
E6M  H22  H22  H  0  1  N  N  N  24.161   5.689  15.253    5.212   5.238  -0.025  H22  E6M  60  
E6M  H23  H23  H  0  1  N  N  N  23.628   6.099  16.919    3.695   5.482  -0.923  H23  E6M  61  
E6M  H24  H24  H  0  1  N  N  N  22.823   2.797  17.718    3.086   7.063   2.301  H24  E6M  62  
E6M  H25  H25  H  0  1  N  N  N  23.335   4.312  18.536    4.645   7.111   1.443  H25  E6M  63  
E6M  H26  H26  H  0  1  N  N  N  22.060   4.361  17.271    3.127   7.355   0.545  H26  E6M  64  
E6M  H27  H27  H  0  1  N  N  N  31.269  10.183  14.897    1.372  -1.051   0.004  H27  E6M  65  
E6M  H28  H28  H  0  1  N  N  N  32.676   9.473  14.035    1.379  -2.226   1.342  H28  E6M  66  
E6M  H29  H29  H  0  1  N  N  N  31.042   8.756  13.831    2.632  -2.306   0.080  H29  E6M  67  
E6M  H30  H30  H  0  1  N  N  N  32.471   4.246  15.396   -0.906   0.531  -1.271  H30  E6M  68  
E6M  H31  H31  H  0  1  N  N  N  30.972   4.176  12.727   -2.379  -0.980  -2.578  H31  E6M  69  
E6M  H32  H32  H  0  1  N  N  N  30.481   3.421  14.281   -2.019  -2.306  -1.446  H32  E6M  70  
E6M  H33  H33  H  0  1  N  N  N  30.513   1.373  12.653   -4.384  -2.459  -0.874  H33  E6M  71  
E6M  H34  H34  H  0  1  N  N  N  32.132   0.762  12.170   -4.744  -1.134  -2.006  H34  E6M  72  
E6M  H35  H35  H  0  1  N  N  N  33.484   2.454  10.608   -6.071   0.774  -1.304  H35  E6M  73  
E6M  H36  H36  H  0  1  N  N  N  31.047   4.156   7.556   -8.243   0.442   2.352  H36  E6M  74  
E6M  H37  H37  H  0  1  N  N  N  29.031   3.568   8.841   -6.945  -1.565   2.941  H37  E6M  75  
E6M  H38  H38  H  0  1  N  N  N  29.231   2.432  11.012   -5.213  -2.406   1.406  H38  E6M  76  
E6M  H39  H39  H  0  1  N  N  N  33.387   3.612   7.130   -7.700   2.336  -0.840  H39  E6M  77  
E6M  H40  H40  H  0  1  N  N  N  33.250   5.832   8.216  -10.093   2.491  -0.208  H40  E6M  78  
E6M  H41  H41  H  0  1  N  N  N  34.411   5.274   9.467   -9.670   0.836  -0.706  H41  E6M  79  
E6M  H42  H42  H  0  1  N  N  N  34.927   5.387   7.750   -9.850   1.226   1.021  H42  E6M  80  
E6M  H43  H43  H  0  1  N  N  N  34.457   1.714   8.308   -6.760   3.291   1.246  H43  E6M  81  
E6M  H44  H44  H  0  1  N  N  N  35.635   2.973   7.805   -8.394   3.925   0.933  H44  E6M  82  
E6M  H45  H45  H  0  1  N  N  N  35.119   2.860   9.522   -8.151   2.660   2.161  H45  E6M  83  
E6M  H46  H46  H  0  1  N  N  N  30.572   5.786  16.474    2.420  -0.820  -1.939  H46  E6M  84  
E6M  H47  H47  H  0  1  N  N  N  27.005   7.388  20.010    6.551   0.793   1.277  H47  E6M  85  
E6M  H48  H48  H  0  1  N  N  N  32.263   1.974  14.160   -3.256   0.257  -0.679  H48  E6M  86  
E6M  H50  H50  H  0  1  N  N  N  34.025   5.469  14.143   -0.694  -1.781   0.427  H50  E6M  87  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
E6M  C78  C80  SING  N  N   1  
E6M  C78  C84  SING  N  N   2  
E6M  C78  C71  SING  N  N   3  
E6M  C72  C71  DOUB  Y  N   4  
E6M  C72  C74  SING  Y  N   5  
E6M  C71  C69  SING  Y  N   6  
E6M  C74  C76  DOUB  Y  N   7  
E6M  C69  C68  DOUB  Y  N   8  
E6M  C76  C68  SING  Y  N   9  
E6M  C68  C65  SING  N  N  10  
E6M  C65  N63  SING  N  N  11  
E6M  N63  C60  SING  N  N  12  
E6M  C60  C56  SING  N  N  13  
E6M  O58  C56  SING  N  N  14  
E6M  O51  C50  DOUB  N  N  15  
E6M  C56  C3   SING  N  N  16  
E6M  C52  C8   SING  N  N  17  
E6M  C3   C5   SING  N  N  18  
E6M  C3   N1   SING  N  N  19  
E6M  C50  N1   SING  N  N  20  
E6M  C50  C36  SING  N  N  21  
E6M  C5   C8   SING  N  N  22  
E6M  C37  C36  DOUB  Y  N  23  
E6M  C37  C39  SING  Y  N  24  
E6M  C8   C10  SING  N  N  25  
E6M  C36  C34  SING  Y  N  26  
E6M  C42  O45  SING  N  N  27  
E6M  C42  C39  SING  N  N  28  
E6M  O45  C46  SING  N  N  29  
E6M  C39  C40  DOUB  Y  N  30  
E6M  C10  C13  SING  N  N  31  
E6M  C13  C16  SING  N  N  32  
E6M  C34  C33  DOUB  Y  N  33  
E6M  C40  C33  SING  Y  N  34  
E6M  C16  C19  SING  N  N  35  
E6M  C33  N31  SING  N  N  36  
E6M  C19  C22  SING  N  N  37  
E6M  N31  C28  SING  N  N  38  
E6M  C25  C28  SING  N  N  39  
E6M  C25  C22  SING  N  N  40  
E6M  C3   H1   SING  N  N  41  
E6M  C5   H2   SING  N  N  42  
E6M  C5   H3   SING  N  N  43  
E6M  C8   H4   SING  N  N  44  
E6M  C10  H5   SING  N  N  45  
E6M  C10  H6   SING  N  N  46  
E6M  C13  H7   SING  N  N  47  
E6M  C13  H8   SING  N  N  48  
E6M  C16  H9   SING  N  N  49  
E6M  C16  H10  SING  N  N  50  
E6M  C19  H11  SING  N  N  51  
E6M  C19  H12  SING  N  N  52  
E6M  C22  H13  SING  N  N  53  
E6M  C22  H14  SING  N  N  54  
E6M  C25  H15  SING  N  N  55  
E6M  C25  H16  SING  N  N  56  
E6M  C28  H17  SING  N  N  57  
E6M  C28  H18  SING  N  N  58  
E6M  C34  H19  SING  N  N  59  
E6M  C37  H20  SING  N  N  60  
E6M  C40  H21  SING  N  N  61  
E6M  C42  H22  SING  N  N  62  
E6M  C42  H23  SING  N  N  63  
E6M  C46  H24  SING  N  N  64  
E6M  C46  H25  SING  N  N  65  
E6M  C46  H26  SING  N  N  66  
E6M  C52  H27  SING  N  N  67  
E6M  C52  H28  SING  N  N  68  
E6M  C52  H29  SING  N  N  69  
E6M  C56  H30  SING  N  N  70  
E6M  C60  H31  SING  N  N  71  
E6M  C60  H32  SING  N  N  72  
E6M  C65  H33  SING  N  N  73  
E6M  C65  H34  SING  N  N  74  
E6M  C69  H35  SING  N  N  75  
E6M  C72  H36  SING  N  N  76  
E6M  C74  H37  SING  N  N  77  
E6M  C76  H38  SING  N  N  78  
E6M  C78  H39  SING  N  N  79  
E6M  C80  H40  SING  N  N  80  
E6M  C80  H41  SING  N  N  81  
E6M  C80  H42  SING  N  N  82  
E6M  C84  H43  SING  N  N  83  
E6M  C84  H44  SING  N  N  84  
E6M  C84  H45  SING  N  N  85  
E6M  N1   H46  SING  N  N  86  
E6M  N31  H47  SING  N  N  87  
E6M  N63  H48  SING  N  N  88  
E6M  O58  H50  SING  N  N  89  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
E6M  SMILES            ACDLabs               12.01  "C2(CC(CCCCCCCNc1cc(cc(c1)COC)C(N2)=O)C)C(CNCc3cc(ccc3)C(C)C)O"  
E6M  InChI             InChI                 1.03   "InChI=1S/C32H49N3O3/c1-23(2)27-13-10-12-25(16-27)20-33-21-31(36)30-15-24(3)11-8-6-5-7-9-14-34-29-18-26(22-38-4)17-28(19-29)32(37)35-30/h10,12-13,16-19,23-24,30-31,33-34,36H,5-9,11,14-15,20-22H2,1-4H3,(H,35,37)/t24-,30+,31-/m1/s1"  
E6M  InChIKey          InChI                 1.03   UGCIUWIDOWOQSA-XGJRVREISA-N  
E6M  SMILES_CANONICAL  CACTVS                3.385  "COCc1cc2NCCCCCCC[C@@H](C)C[C@H](NC(=O)c(c1)c2)[C@H](O)CNCc3cccc(c3)C(C)C"  
E6M  SMILES            CACTVS                3.385  "COCc1cc2NCCCCCCC[CH](C)C[CH](NC(=O)c(c1)c2)[CH](O)CNCc3cccc(c3)C(C)C"  
E6M  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@@H]1CCCCCCCNc2cc(cc(c2)C(=O)N[C@@H](C1)[C@@H](CNCc3cccc(c3)C(C)C)O)COC"  
E6M  SMILES            "OpenEye OEToolkits"  2.0.6  "CC1CCCCCCCNc2cc(cc(c2)C(=O)NC(C1)C(CNCc3cccc(c3)C(C)C)O)COC"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
E6M  "SYSTEMATIC NAME"  ACDLabs               12.01  "(10R,12S)-12-[(1R)-1-hydroxy-2-({[3-(propan-2-yl)phenyl]methyl}amino)ethyl]-17-(methoxymethyl)-10-methyl-2,13-diazabicyclo[13.3.1]nonadeca-1(19),15,17-trien-14-one"  
E6M  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(10~{R},12~{S})-17-(methoxymethyl)-10-methyl-12-[(1~{R})-1-oxidanyl-2-[(3-propan-2-ylphenyl)methylamino]ethyl]-2,13-diazabicyclo[13.3.1]nonadeca-1(19),15,17-trien-14-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
E6M  "Create component"  2017-12-04  RCSB  
E6M  "Initial release"   2020-06-03  RCSB  
##
