data_DNM
# 
_chem_comp.id                                    DNM 
_chem_comp.name                                  N-methyl-D-norleucine 
_chem_comp.type                                  "D-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C7 H15 N O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2003-11-17 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        145.199 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DNM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1S1O 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DNM C   C   C 0 1 N N N Y N Y 33.957 18.720 -1.612 1.891  -0.680 -0.001 C   DNM 1  
DNM N   N   N 0 1 N N N Y Y N 35.839 18.371 0.037  0.732  1.420  0.387  N   DNM 2  
DNM O   O   O 0 1 N N N Y N Y 34.162 19.922 -1.771 2.757  -0.217 0.701  O   DNM 3  
DNM C1  C1  C 0 1 N N N N N N 36.480 19.664 -0.217 1.474  2.393  -0.426 C1  DNM 4  
DNM CA  CA  C 0 1 N N R Y N N 35.050 17.784 -1.063 0.648  0.120  -0.294 CA  DNM 5  
DNM CB  CB  C 0 1 N N N N N N 35.967 17.286 -2.193 -0.580 -0.641 0.211  CB  DNM 6  
DNM CD  CD  C 0 1 N N N N N N 37.785 15.611 -2.814 -3.076 -0.650 0.308  CD  DNM 7  
DNM CE  CE  C 0 1 N N N N N N 38.605 16.599 -3.650 -4.345 0.102  -0.098 CE  DNM 8  
DNM CG  CG  C 0 1 N N N N N N 37.025 16.300 -1.675 -1.849 0.111  -0.196 CG  DNM 9  
DNM OXT OXT O 0 1 N Y N Y N Y ?      ?      ?      2.037  -1.907 -0.526 OXT DNM 10 
DNM HA  HA  H 0 1 N N N Y N N 34.534 16.899 -0.662 0.562  0.278  -1.369 HA  DNM 11 
DNM HB  HB  H 0 1 N N N N N N 35.353 16.782 -2.954 -0.593 -1.639 -0.227 HB  DNM 12 
DNM HBA HBA H 0 1 N N N N N N 36.476 18.150 -2.645 -0.537 -0.721 1.297  HBA DNM 13 
DNM H1  H1  H 0 1 N N N N N N 37.031 19.983 0.680  1.521  3.346  0.101  H1  DNM 14 
DNM H1A H1A H 0 1 N N N N N N 35.712 20.413 -0.460 2.484  2.024  -0.601 H1A DNM 15 
DNM H1B H1B H 0 1 N N N N N N 37.178 19.567 -1.061 0.967  2.530  -1.381 H1B DNM 16 
DNM HD  HD  H 0 1 N N N N N N 38.466 14.863 -2.382 -3.033 -0.730 1.394  HD  DNM 17 
DNM HDA HDA H 0 1 N N N N N N 37.059 15.110 -3.471 -3.090 -1.648 -0.130 HDA DNM 18 
DNM HE  HE  H 0 1 N N N N N N 39.341 17.102 -3.006 -5.220 -0.440 0.261  HE  DNM 19 
DNM HEA HEA H 0 1 N N N N N N 39.129 16.056 -4.451 -4.332 1.100  0.339  HEA DNM 20 
DNM HEB HEB H 0 1 N N N N N N 37.934 17.349 -4.094 -4.388 0.182  -1.184 HEB DNM 21 
DNM HG  HG  H 0 1 N N N N N N 36.525 15.531 -1.068 -1.835 1.110  0.242  HG  DNM 22 
DNM HGA HGA H 0 1 N N N N N N 37.745 16.849 -1.051 -1.891 0.191  -1.282 HGA DNM 23 
DNM H   HN  H 0 1 N Y N Y Y N 35.226 18.487 0.819  -0.187 1.767  0.617  HN  DNM 24 
DNM HXT HXT H 0 1 N Y N Y N Y ?      ?      ?      2.851  -2.382 -0.311 HXT DNM 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DNM OXT C   SING N N 1  
DNM O   C   DOUB N N 2  
DNM C   CA  SING N N 3  
DNM CA  N   SING N N 4  
DNM C1  N   SING N N 5  
DNM N   H   SING N N 6  
DNM OXT HXT SING N N 7  
DNM H1  C1  SING N N 8  
DNM C1  H1B SING N N 9  
DNM C1  H1A SING N N 10 
DNM CB  CA  SING N N 11 
DNM CA  HA  SING N N 12 
DNM HB  CB  SING N N 13 
DNM HBA CB  SING N N 14 
DNM CB  CG  SING N N 15 
DNM CE  CD  SING N N 16 
DNM HDA CD  SING N N 17 
DNM CD  HD  SING N N 18 
DNM CD  CG  SING N N 19 
DNM HEA CE  SING N N 20 
DNM HEB CE  SING N N 21 
DNM CE  HE  SING N N 22 
DNM CG  HGA SING N N 23 
DNM CG  HG  SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DNM SMILES           ACDLabs              12.01 "C(C(NC)CCCC)(=O)O"                                                            
DNM InChI            InChI                1.03  "InChI=1S/C7H15NO2/c1-3-4-5-6(8-2)7(9)10/h6,8H,3-5H2,1-2H3,(H,9,10)/t6-/m1/s1" 
DNM InChIKey         InChI                1.03  FPDYKABXINADKS-ZCFIWIBFSA-N                                                    
DNM SMILES_CANONICAL CACTVS               3.385 "CCCC[C@@H](NC)C(O)=O"                                                         
DNM SMILES           CACTVS               3.385 "CCCC[CH](NC)C(O)=O"                                                           
DNM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCC[C@H](C(=O)O)NC"                                                          
DNM SMILES           "OpenEye OEToolkits" 1.7.6 "CCCCC(C(=O)O)NC"                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DNM "SYSTEMATIC NAME" ACDLabs              12.01 N-methyl-D-norleucine               
DNM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2-(methylamino)hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DNM "Create component"    2003-11-17 RCSB 
DNM "Modify descriptor"   2011-06-04 RCSB 
DNM "Other modification"  2012-09-07 RCSB 
DNM "Modify linking type" 2017-02-28 RCSB 
DNM "Modify backbone"     2023-11-03 PDBE 
DNM "Modify PCM"          2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 DNM DLE Norleucine  "Named protein modification" "Amino-acid side chain" "Any position" ? ? ? ? 
2 DNM DLE Methylation "Named protein modification" "Amino-acid backbone"   "Any position" ? ? ? ? 
# 
