data_DKM
# 
_chem_comp.id                                    DKM 
_chem_comp.name                                  "5-[(3S,4S)-3-(dimethylamino)-4-hydroxypyrrolidin-1-yl]-6-fluoro-4-methyl-8-oxo-3,4-dihydro-8H-1-thia-4,9b-diazacyclopenta[cd]phenalene-9-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H21 F N4 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-10-30 
_chem_comp.pdbx_modified_date                    2018-02-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        432.469 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DKM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6BFB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DKM N1  N1  N 0 1 N N N 25.915 38.297 20.680 2.544  0.502  0.172  N1  DKM 1  
DKM N3  N2  N 0 1 N N N 26.750 41.697 24.180 -2.246 0.953  0.064  N3  DKM 2  
DKM C4  C1  C 0 1 N N N 27.275 37.757 20.589 3.254  0.252  1.453  C4  DKM 3  
DKM C5  C2  C 0 1 N N S 27.197 36.937 19.310 4.749  0.429  1.111  C5  DKM 4  
DKM C6  C3  C 0 1 Y N N 25.488 39.026 21.869 1.267  -0.065 0.188  C6  DKM 5  
DKM C7  C4  C 0 1 Y N N 24.252 38.813 22.513 1.117  -1.441 0.364  C7  DKM 6  
DKM C8  C5  C 0 1 Y N N 23.835 39.517 23.615 -0.126 -2.037 0.370  C8  DKM 7  
DKM C10 C6  C 0 1 N N N 24.175 41.309 25.320 -2.621 -1.824 0.161  C10 DKM 8  
DKM C13 C7  C 0 1 N N N 28.730 42.746 24.499 -3.290 2.983  0.007  C13 DKM 9  
DKM C15 C8  C 0 1 N N N 28.542 40.810 22.785 -0.772 2.967  0.311  C15 DKM 10 
DKM C17 C9  C 0 1 Y N N 26.331 40.023 22.436 0.143  0.744  0.028  C17 DKM 11 
DKM O2  O1  O 0 1 N N N 25.506 43.852 27.605 -6.043 -0.719 -0.237 O2  DKM 12 
DKM C19 C10 C 0 1 N N N 24.676 43.237 26.932 -5.104 -1.482 -0.109 C19 DKM 13 
DKM O3  O2  O 0 1 N N N 23.372 43.304 27.171 -5.317 -2.815 -0.076 O3  DKM 14 
DKM C11 C11 C 0 1 N N N 25.105 42.359 25.811 -3.746 -0.957 0.009  C11 DKM 15 
DKM O1  O3  O 0 1 N N N 23.087 41.077 25.858 -2.778 -3.032 0.242  O1  DKM 16 
DKM C12 C12 C 0 1 N N N 26.381 42.518 25.243 -3.489 0.423  -0.021 C12 DKM 17 
DKM C14 C13 C 0 1 N N N 28.090 41.815 23.785 -2.140 2.324  0.128  C14 DKM 18 
DKM S   S1  S 0 1 N N N 27.731 43.477 25.686 -4.559 1.750  -0.139 S   DKM 19 
DKM C18 C14 C 0 1 Y N N 25.912 40.733 23.584 -1.105 0.141  0.091  C18 DKM 20 
DKM C9  C15 C 0 1 Y N N 24.653 40.506 24.161 -1.269 -1.243 0.215  C9  DKM 21 
DKM F   F1  F 0 1 N N N 23.434 37.848 22.047 2.216  -2.208 0.534  F   DKM 22 
DKM N2  N3  N 0 1 N N N 27.550 40.358 21.826 0.269  2.107  -0.254 N2  DKM 23 
DKM C16 C16 C 0 1 N N N 27.340 41.226 20.687 0.416  2.334  -1.698 C16 DKM 24 
DKM C3  C17 C 0 1 N N N 24.974 37.510 19.891 3.402  -0.146 -0.853 C3  DKM 25 
DKM O   O4  O 0 1 N N N 28.172 37.358 18.355 5.174  1.759  1.416  O   DKM 26 
DKM C2  C18 C 0 1 N N S 25.843 37.241 18.674 4.846  0.167  -0.406 C2  DKM 27 
DKM N   N4  N 0 1 N N N 25.459 36.092 17.832 5.722  -0.982 -0.670 N   DKM 28 
DKM C1  C19 C 0 1 N N N 24.009 35.850 17.721 5.826  -1.245 -2.112 C1  DKM 29 
DKM C   C20 C 0 1 N N N 26.130 36.083 16.523 7.050  -0.780 -0.075 C   DKM 30 
DKM H9  H1  H 0 1 N N N 27.514 37.125 21.457 2.947  0.978  2.206  H9  DKM 31 
DKM H10 H2  H 0 1 N N N 28.021 38.561 20.505 3.059  -0.762 1.804  H10 DKM 32 
DKM H11 H3  H 0 1 N N N 27.282 35.864 19.536 5.351  -0.295 1.660  H11 DKM 33 
DKM H13 H4  H 0 1 N N N 22.874 39.305 24.059 -0.218 -3.106 0.492  H13 DKM 34 
DKM H14 H5  H 0 1 N N N 29.766 43.010 24.345 -3.424 4.054  -0.001 H14 DKM 35 
DKM H15 H6  H 0 1 N N N 28.900 39.928 23.336 -0.757 3.932  -0.194 H15 DKM 36 
DKM H16 H7  H 0 1 N N N 29.376 41.253 22.220 -0.581 3.112  1.374  H16 DKM 37 
DKM H20 H8  H 0 1 N N N 23.214 43.879 27.911 -6.247 -3.066 -0.161 H20 DKM 38 
DKM H18 H10 H 0 1 N N N 28.309 41.472 20.229 -0.461 1.950  -2.218 H18 DKM 39 
DKM H17 H11 H 0 1 N N N 26.705 40.715 19.948 0.512  3.403  -1.889 H17 DKM 40 
DKM H19 H12 H 0 1 N N N 26.845 42.151 21.018 1.307  1.819  -2.058 H19 DKM 41 
DKM H7  H13 H 0 1 N N N 24.072 38.084 19.634 3.233  -1.223 -0.864 H7  DKM 42 
DKM H8  H14 H 0 1 N N N 24.684 36.581 20.403 3.206  0.279  -1.837 H8  DKM 43 
DKM H12 H15 H 0 1 N N N 29.043 37.193 18.697 5.092  1.993  2.350  H12 DKM 44 
DKM H6  H16 H 0 1 N N N 25.919 38.153 18.064 5.218  1.053  -0.920 H6  DKM 45 
DKM H5  H18 H 0 1 N N N 23.556 35.867 18.723 6.238  -0.369 -2.612 H5  DKM 46 
DKM H4  H19 H 0 1 N N N 23.553 36.635 17.100 6.480  -2.101 -2.279 H4  DKM 47 
DKM H3  H20 H 0 1 N N N 23.836 34.868 17.257 4.836  -1.461 -2.514 H3  DKM 48 
DKM H2  H21 H 0 1 N N N 27.206 36.267 16.661 6.950  -0.657 1.003  H2  DKM 49 
DKM H   H22 H 0 1 N N N 25.984 35.104 16.043 7.679  -1.645 -0.286 H   DKM 50 
DKM H1  H23 H 0 1 N N N 25.702 36.871 15.886 7.507  0.114  -0.502 H1  DKM 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DKM C   N   SING N N 1  
DKM C1  N   SING N N 2  
DKM N   C2  SING N N 3  
DKM O   C5  SING N N 4  
DKM C2  C5  SING N N 5  
DKM C2  C3  SING N N 6  
DKM C5  C4  SING N N 7  
DKM C3  N1  SING N N 8  
DKM C4  N1  SING N N 9  
DKM N1  C6  SING N N 10 
DKM C16 N2  SING N N 11 
DKM N2  C17 SING N N 12 
DKM N2  C15 SING N N 13 
DKM C6  C17 DOUB Y N 14 
DKM C6  C7  SING Y N 15 
DKM F   C7  SING N N 16 
DKM C17 C18 SING Y N 17 
DKM C7  C8  DOUB Y N 18 
DKM C15 C14 SING N N 19 
DKM C18 C9  DOUB Y N 20 
DKM C18 N3  SING N N 21 
DKM C8  C9  SING Y N 22 
DKM C14 N3  SING N N 23 
DKM C14 C13 DOUB N N 24 
DKM C9  C10 SING N N 25 
DKM N3  C12 SING N N 26 
DKM C13 S   SING N N 27 
DKM C12 S   SING N N 28 
DKM C12 C11 DOUB N N 29 
DKM C10 C11 SING N N 30 
DKM C10 O1  DOUB N N 31 
DKM C11 C19 SING N N 32 
DKM C19 O3  SING N N 33 
DKM C19 O2  DOUB N N 34 
DKM C4  H9  SING N N 35 
DKM C4  H10 SING N N 36 
DKM C5  H11 SING N N 37 
DKM C8  H13 SING N N 38 
DKM C13 H14 SING N N 39 
DKM C15 H15 SING N N 40 
DKM C15 H16 SING N N 41 
DKM O3  H20 SING N N 42 
DKM C16 H18 SING N N 43 
DKM C16 H17 SING N N 44 
DKM C16 H19 SING N N 45 
DKM C3  H7  SING N N 46 
DKM C3  H8  SING N N 47 
DKM O   H12 SING N N 48 
DKM C2  H6  SING N N 49 
DKM C1  H5  SING N N 50 
DKM C1  H4  SING N N 51 
DKM C1  H3  SING N N 52 
DKM C   H2  SING N N 53 
DKM C   H   SING N N 54 
DKM C   H1  SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DKM SMILES           ACDLabs              12.01 "N5(c1c4c2N3C(=C(C(=O)c2cc1F)C(=O)O)SC=C3CN4C)CC(O)C(C5)N(C)C"                                                                                                              
DKM InChI            InChI                1.03  "InChI=1S/C20H21FN4O4S/c1-22(2)12-6-24(7-13(12)26)16-11(21)4-10-15-17(16)23(3)5-9-8-30-19(25(9)15)14(18(10)27)20(28)29/h4,8,12-13,26H,5-7H2,1-3H3,(H,28,29)/t12-,13-/m0/s1" 
DKM InChIKey         InChI                1.03  JHSMWPKZVMQLKB-STQMWFEESA-N                                                                                                                                                 
DKM SMILES_CANONICAL CACTVS               3.385 "CN(C)[C@H]1CN(C[C@@H]1O)c2c(F)cc3C(=O)C(=C4SC=C5CN(C)c2c3[N@@]45)C(O)=O"                                                                                                   
DKM SMILES           CACTVS               3.385 "CN(C)[CH]1CN(C[CH]1O)c2c(F)cc3C(=O)C(=C4SC=C5CN(C)c2c3[N]45)C(O)=O"                                                                                                        
DKM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN1CC2=CSC3=C(C(=O)c4cc(c(c1c4N23)N5C[C@@H]([C@H](C5)O)N(C)C)F)C(=O)O"                                                                                                     
DKM SMILES           "OpenEye OEToolkits" 2.0.6 "CN1CC2=CSC3=C(C(=O)c4cc(c(c1c4N23)N5CC(C(C5)O)N(C)C)F)C(=O)O"                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DKM "SYSTEMATIC NAME" ACDLabs 12.01 "5-[(3S,4S)-3-(dimethylamino)-4-hydroxypyrrolidin-1-yl]-6-fluoro-4-methyl-8-oxo-3,4-dihydro-8H-1-thia-4,9b-diazacyclopenta[cd]phenalene-9-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DKM "Create component" 2017-10-30 RCSB 
DKM "Initial release"  2018-02-21 RCSB 
# 
