data_A1L2M
# 
_chem_comp.id                                    A1L2M 
_chem_comp.name                                  "4-[2-cyclopropyl-7-[[(1~{R})-1-naphthalen-2-ylethyl]amino]-[1,2,4]triazolo[1,5-a]pyrimidin-5-yl]piperazine-1-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H28 N8 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-06-27 
_chem_comp.pdbx_modified_date                    2024-08-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        456.543 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1L2M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9IK1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1L2M C1  C1  C 0 1 Y N N N N N 122.967 127.423 136.230 -5.083 1.909  -0.313 C1  A1L2M 1  
A1L2M C2  C2  C 0 1 Y N N N N N 122.368 126.181 136.558 -5.960 0.811  -0.131 C2  A1L2M 2  
A1L2M C3  C3  C 0 1 Y N N N N N 121.319 125.691 135.736 -7.306 0.933  -0.517 C3  A1L2M 3  
A1L2M C4  C4  C 0 1 Y N N N N N 120.894 126.397 134.656 -7.747 2.100  -1.060 C4  A1L2M 4  
A1L2M C5  C5  C 0 1 Y N N N N N 121.487 127.625 134.333 -6.885 3.180  -1.239 C5  A1L2M 5  
A1L2M C6  C6  C 0 1 Y N N N N N 122.494 128.125 135.096 -5.574 3.097  -0.881 C6  A1L2M 6  
A1L2M C10 C7  C 0 1 Y N N N N N 122.836 125.478 137.688 -5.467 -0.379 0.432  C10 A1L2M 7  
A1L2M C12 C8  C 0 1 N N R N N N 125.578 127.770 138.998 -1.851 0.493  1.027  C12 A1L2M 8  
A1L2M C21 C9  C 0 1 Y N N N N N 126.268 126.479 140.989 -0.009 -1.040 0.459  C21 A1L2M 9  
A1L2M C23 C10 C 0 1 Y N N N N N 127.072 126.743 143.218 1.798  -2.472 -0.094 C23 A1L2M 10 
A1L2M C25 C11 C 0 1 Y N N N N N 125.263 125.399 142.937 2.238  -0.242 0.352  C25 A1L2M 11 
A1L2M C26 C12 C 0 1 Y N N N N N 125.294 125.640 141.525 0.874  -0.004 0.579  C26 A1L2M 12 
A1L2M C28 C13 C 0 1 N N N N N N 124.454 124.228 144.888 2.686  2.169  0.714  C28 A1L2M 13 
A1L2M C29 C14 C 0 1 N N N N N N 123.251 124.668 145.675 3.256  3.079  -0.381 C29 A1L2M 14 
A1L2M C31 C15 C 0 1 N N N N N N 121.961 123.897 143.753 5.159  1.452  -0.744 C31 A1L2M 15 
A1L2M C32 C16 C 0 1 N N N N N N 122.920 124.866 143.097 4.589  0.542  0.351  C32 A1L2M 16 
A1L2M C34 C17 C 0 1 Y N N N N N 128.688 128.038 142.866 0.789  -4.372 -0.392 C34 A1L2M 17 
A1L2M C36 C18 C 0 1 N N N N N N 129.850 128.885 143.146 0.575  -5.833 -0.693 C36 A1L2M 18 
A1L2M C37 C19 C 0 1 N N N N N N 130.104 130.087 142.299 1.288  -6.850 0.200  C37 A1L2M 19 
A1L2M C38 C20 C 0 1 N N N N N N 130.986 128.913 142.177 1.766  -6.625 -1.236 C38 A1L2M 20 
A1L2M C39 C21 C 0 1 N N N N N N 121.205 123.343 146.030 5.584  3.836  -0.385 C39 A1L2M 21 
A1L2M C42 C22 C 0 1 N N N N N N 125.065 128.776 140.026 -1.733 0.693  2.539  C42 A1L2M 22 
A1L2M C7  C23 C 0 1 Y N N N N N 124.012 127.913 137.045 -3.737 1.788  0.073  C7  A1L2M 23 
A1L2M C8  C24 C 0 1 Y N N N N N 124.455 127.218 138.136 -3.295 0.620  0.614  C8  A1L2M 24 
A1L2M C9  C25 C 0 1 Y N N N N N 123.846 125.980 138.453 -4.157 -0.460 0.794  C9  A1L2M 25 
A1L2M N13 N1  N 0 1 N N N N N N 126.347 126.732 139.679 -1.357 -0.839 0.670  N13 A1L2M 26 
A1L2M N22 N2  N 0 1 Y N N N N N 127.154 127.006 141.899 0.463  -2.278 0.120  N22 A1L2M 27 
A1L2M N24 N3  N 0 1 Y N N N N N 126.138 125.936 143.794 2.658  -1.454 0.025  N24 A1L2M 28 
A1L2M N27 N4  N 0 1 N N N N N N 124.307 124.585 143.475 3.146  0.795  0.469  N27 A1L2M 29 
A1L2M N30 N5  N 0 1 N N N N N N 122.074 123.948 145.207 4.699  2.826  -0.499 N30 A1L2M 30 
A1L2M N33 N6  N 0 1 Y N N N N N 128.187 127.842 141.652 -0.154 -3.519 -0.080 N33 A1L2M 31 
A1L2M N35 N7  N 0 1 Y N N N N N 128.048 127.396 143.845 1.964  -3.753 -0.403 N35 A1L2M 32 
A1L2M N40 N8  N 0 1 N N N N N N 120.150 122.770 145.467 5.158  5.071  -0.054 N40 A1L2M 33 
A1L2M O41 O1  O 0 1 N N N N N N 121.388 123.322 147.247 6.767  3.632  -0.580 O41 A1L2M 34 
A1L2M H1  H1  H 0 1 N N N N N N 120.853 124.746 135.972 -7.985 0.104  -0.385 H1  A1L2M 35 
A1L2M H2  H2  H 0 1 N N N N N N 120.094 126.009 134.042 -8.782 2.191  -1.356 H2  A1L2M 36 
A1L2M H3  H3  H 0 1 N N N N N N 121.141 128.178 133.472 -7.261 4.095  -1.671 H3  A1L2M 37 
A1L2M H4  H4  H 0 1 N N N N N N 122.940 129.073 134.833 -4.918 3.942  -1.026 H4  A1L2M 38 
A1L2M H5  H5  H 0 1 N N N N N N 122.389 124.531 137.950 -6.124 -1.224 0.577  H5  A1L2M 39 
A1L2M H6  H6  H 0 1 N N N N N N 126.263 128.313 138.330 -1.258 1.250  0.513  H6  A1L2M 40 
A1L2M H7  H7  H 0 1 N N N N N N 124.565 125.173 140.879 0.527  0.983  0.845  H7  A1L2M 41 
A1L2M H8  H8  H 0 1 N N N N N N 124.563 123.137 144.975 3.039  2.505  1.689  H8  A1L2M 42 
A1L2M H9  H9  H 0 1 N N N N N N 125.350 124.720 145.293 1.597  2.203  0.688  H9  A1L2M 43 
A1L2M H10 H10 H 0 1 N N N N N N 123.412 124.453 146.742 2.767  2.859  -1.331 H10 A1L2M 44 
A1L2M H11 H11 H 0 1 N N N N N N 123.098 125.749 145.538 3.086  4.122  -0.115 H11 A1L2M 45 
A1L2M H12 H12 H 0 1 N N N N N N 120.932 124.158 143.463 6.248  1.420  -0.716 H12 A1L2M 46 
A1L2M H13 H13 H 0 1 N N N N N N 122.191 122.877 143.411 4.808  1.117  -1.720 H13 A1L2M 47 
A1L2M H14 H14 H 0 1 N N N N N N 122.664 125.889 143.410 4.757  -0.502 0.084  H14 A1L2M 48 
A1L2M H15 H15 H 0 1 N N N N N N 122.823 124.781 142.005 5.078  0.762  1.301  H15 A1L2M 49 
A1L2M H16 H16 H 0 1 N N N N N N 130.130 128.985 144.205 -0.416 -6.097 -1.064 H16 A1L2M 50 
A1L2M H17 H17 H 0 1 N N N N N N 130.482 131.012 142.759 1.912  -6.463 1.005  H17 A1L2M 51 
A1L2M H18 H18 H 0 1 N N N N N N 129.411 130.340 141.483 0.767  -7.783 0.417  H18 A1L2M 52 
A1L2M H19 H19 H 0 1 N N N N N N 130.950 128.291 141.270 1.559  -7.410 -1.964 H19 A1L2M 53 
A1L2M H20 H20 H 0 1 N N N N N N 132.021 128.963 142.546 2.705  -6.089 -1.376 H20 A1L2M 54 
A1L2M H21 H21 H 0 1 N N N N N N 125.908 129.149 140.627 -2.326 -0.064 3.053  H21 A1L2M 55 
A1L2M H22 H22 H 0 1 N N N N N N 124.584 129.618 139.507 -0.689 0.601  2.838  H22 A1L2M 56 
A1L2M H23 H23 H 0 1 N N N N N N 124.334 128.286 140.685 -2.101 1.684  2.805  H23 A1L2M 57 
A1L2M H24 H24 H 0 1 N N N N N N 124.472 128.859 136.800 -3.057 2.616  -0.060 H24 A1L2M 58 
A1L2M H25 H25 H 0 1 N N N N N N 124.187 125.425 139.314 -3.781 -1.375 1.226  H25 A1L2M 59 
A1L2M H26 H26 H 0 1 N N N N N N 126.108 125.875 139.223 -1.977 -1.579 0.583  H26 A1L2M 60 
A1L2M H27 H27 H 0 1 N N N N N N 119.473 122.302 146.035 5.783  5.813  -0.045 H27 A1L2M 61 
A1L2M H28 H28 H 0 1 N N N N N N 120.032 122.806 144.475 4.227  5.218  0.175  H28 A1L2M 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1L2M C5  C4  DOUB Y N 1  
A1L2M C5  C6  SING Y N 2  
A1L2M C4  C3  SING Y N 3  
A1L2M C6  C1  DOUB Y N 4  
A1L2M C3  C2  DOUB Y N 5  
A1L2M C1  C2  SING Y N 6  
A1L2M C1  C7  SING Y N 7  
A1L2M C2  C10 SING Y N 8  
A1L2M C7  C8  DOUB Y N 9  
A1L2M C10 C9  DOUB Y N 10 
A1L2M C8  C9  SING Y N 11 
A1L2M C8  C12 SING N N 12 
A1L2M C12 N13 SING N N 13 
A1L2M C12 C42 SING N N 14 
A1L2M N13 C21 SING N N 15 
A1L2M C21 C26 DOUB Y N 16 
A1L2M C21 N22 SING Y N 17 
A1L2M C26 C25 SING Y N 18 
A1L2M N33 N22 SING Y N 19 
A1L2M N33 C34 DOUB Y N 20 
A1L2M N22 C23 SING Y N 21 
A1L2M C38 C37 SING N N 22 
A1L2M C38 C36 SING N N 23 
A1L2M C37 C36 SING N N 24 
A1L2M C34 C36 SING N N 25 
A1L2M C34 N35 SING Y N 26 
A1L2M C25 N27 SING N N 27 
A1L2M C25 N24 DOUB Y N 28 
A1L2M C32 N27 SING N N 29 
A1L2M C32 C31 SING N N 30 
A1L2M C23 N24 SING Y N 31 
A1L2M C23 N35 DOUB Y N 32 
A1L2M N27 C28 SING N N 33 
A1L2M C31 N30 SING N N 34 
A1L2M C28 C29 SING N N 35 
A1L2M N30 C29 SING N N 36 
A1L2M N30 C39 SING N N 37 
A1L2M N40 C39 SING N N 38 
A1L2M C39 O41 DOUB N N 39 
A1L2M C3  H1  SING N N 40 
A1L2M C4  H2  SING N N 41 
A1L2M C5  H3  SING N N 42 
A1L2M C6  H4  SING N N 43 
A1L2M C10 H5  SING N N 44 
A1L2M C12 H6  SING N N 45 
A1L2M C26 H7  SING N N 46 
A1L2M C28 H8  SING N N 47 
A1L2M C28 H9  SING N N 48 
A1L2M C29 H10 SING N N 49 
A1L2M C29 H11 SING N N 50 
A1L2M C31 H12 SING N N 51 
A1L2M C31 H13 SING N N 52 
A1L2M C32 H14 SING N N 53 
A1L2M C32 H15 SING N N 54 
A1L2M C36 H16 SING N N 55 
A1L2M C37 H17 SING N N 56 
A1L2M C37 H18 SING N N 57 
A1L2M C38 H19 SING N N 58 
A1L2M C38 H20 SING N N 59 
A1L2M C42 H21 SING N N 60 
A1L2M C42 H22 SING N N 61 
A1L2M C42 H23 SING N N 62 
A1L2M C7  H24 SING N N 63 
A1L2M C9  H25 SING N N 64 
A1L2M N13 H26 SING N N 65 
A1L2M N40 H27 SING N N 66 
A1L2M N40 H28 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1L2M InChI            InChI                1.06  "InChI=1S/C25H28N8O/c1-16(19-9-6-17-4-2-3-5-20(17)14-19)27-22-15-21(31-10-12-32(13-11-31)24(26)34)28-25-29-23(18-7-8-18)30-33(22)25/h2-6,9,14-16,18,27H,7-8,10-13H2,1H3,(H2,26,34)/t16-/m1/s1" 
A1L2M InChIKey         InChI                1.06  TUOBKNKUSLWHLI-MRXNPFEDSA-N                                                                                                                                                                    
A1L2M SMILES_CANONICAL CACTVS               3.385 "C[C@@H](Nc1cc(nc2nc(nn12)C3CC3)N4CCN(CC4)C(N)=O)c5ccc6ccccc6c5"                                                                                                                               
A1L2M SMILES           CACTVS               3.385 "C[CH](Nc1cc(nc2nc(nn12)C3CC3)N4CCN(CC4)C(N)=O)c5ccc6ccccc6c5"                                                                                                                                 
A1L2M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](c1ccc2ccccc2c1)Nc3cc(nc4n3nc(n4)C5CC5)N6CCN(CC6)C(=O)N"                                                                                                                                
A1L2M SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1ccc2ccccc2c1)Nc3cc(nc4n3nc(n4)C5CC5)N6CCN(CC6)C(=O)N"                                                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           A1L2M 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-[2-cyclopropyl-7-[[(1~{R})-1-naphthalen-2-ylethyl]amino]-[1,2,4]triazolo[1,5-a]pyrimidin-5-yl]piperazine-1-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1L2M "Create component" 2024-06-27 PDBJ 
A1L2M "Initial release"  2024-09-04 RCSB 
# 
