data_A1AAM
# 
_chem_comp.id                                    A1AAM 
_chem_comp.name                                  "(2S,2'S)-3,3'-[carbonylbis(azanediyl-3,1-phenylene)]bis{2-[(3R)-pyrrolidin-1-ium-3-yl]propanoate}" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H34 N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         LY3441732 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-17 
_chem_comp.pdbx_modified_date                    2024-05-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        494.583 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AAM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8V9B 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AAM O1  O1  O 0 1 N N N N N N 20.839 -5.368 17.815 -6.689  -2.745 0.340  O1  A1AAM 1  
A1AAM C7  C1  C 0 1 Y N N N N N 25.031 -4.080 18.451 -4.501  0.129  -1.115 C7  A1AAM 2  
A1AAM O2  O2  O 0 1 N N N N N N 25.201 -0.010 17.474 0.257   0.668  -1.443 O2  A1AAM 3  
A1AAM C6  C2  C 0 1 N N N N N N 23.591 -4.519 18.384 -5.899  0.630  -0.855 C6  A1AAM 4  
A1AAM C1  C3  C 0 1 N N S N N N 23.097 -5.148 17.069 -6.587  -0.285 0.160  C1  A1AAM 5  
A1AAM N1  N1  N 0 1 N N N N N N 27.182 -1.136 17.592 -1.120  0.471  0.289  N1  A1AAM 6  
A1AAM C5  C4  C 0 1 N N N N N N 22.573 -7.451 15.989 -8.679  -0.611 1.554  C5  A1AAM 7  
A1AAM C4  C5  C 0 1 N N N N N N 23.370 -8.724 15.874 -9.611  0.403  2.263  C4  A1AAM 8  
A1AAM C3  C6  C 0 1 N N N N N N 24.855 -7.012 16.706 -7.797  1.629  1.286  C3  A1AAM 9  
A1AAM C2  C7  C 0 1 N N R N N N 23.390 -6.678 17.040 -7.955  0.296  0.524  C2  A1AAM 10 
A1AAM O4  O3  O 0 1 N N N N N N 20.850 5.352  17.039 5.924   -2.240 1.371  O4  A1AAM 11 
A1AAM C22 C8  C 0 1 N N N N N N 21.591 4.888  17.938 5.562   -1.321 0.675  C22 A1AAM 12 
A1AAM O3  O4  O 0 1 N N N N N N 21.186 4.237  18.921 4.289   -1.260 0.253  O3  A1AAM 13 
A1AAM C21 C9  C 0 1 N N S N N N 23.095 5.139  17.806 6.539   -0.243 0.283  C21 A1AAM 14 
A1AAM C23 C10 C 0 1 N N R N N N 23.386 6.665  17.871 7.908   -0.550 0.892  C23 A1AAM 15 
A1AAM C26 C11 C 0 1 N N N N N N 22.555 7.440  18.907 8.495   -1.854 0.292  C26 A1AAM 16 
A1AAM C25 C12 C 0 1 N N N N N N 23.359 8.704  19.038 10.017  -1.623 0.470  C25 A1AAM 17 
A1AAM N3  N2  N 0 1 N N N N N N 24.767 8.218  19.062 10.212  -0.181 0.214  N3  A1AAM 18 
A1AAM C24 C13 C 0 1 N N N N N N 24.844 6.990  18.203 8.941   0.519  0.477  C24 A1AAM 19 
A1AAM C20 C14 C 0 1 N N N N N N 23.595 4.525  16.485 6.042   1.109  0.800  C20 A1AAM 20 
A1AAM C18 C15 C 0 1 Y N N N N N 25.036 4.082  16.428 4.752   1.468  0.108  C18 A1AAM 21 
A1AAM C19 C16 C 0 1 Y N N N N N 26.008 4.889  15.853 4.779   2.184  -1.075 C19 A1AAM 22 
A1AAM C16 C17 C 0 1 Y N N N N N 27.330 4.473  15.789 3.598   2.516  -1.713 C16 A1AAM 23 
A1AAM C15 C18 C 0 1 Y N N N N N 27.693 3.224  16.265 2.387   2.131  -1.171 C15 A1AAM 24 
A1AAM C17 C19 C 0 1 Y N N N N N 25.405 2.825  16.898 3.545   1.076  0.652  C17 A1AAM 25 
A1AAM C14 C20 C 0 1 Y N N N N N 26.729 2.389  16.819 2.357   1.412  0.016  C14 A1AAM 26 
A1AAM N2  N3  N 0 1 N N N N N N 27.176 1.127  17.289 1.132   1.021  0.567  N2  A1AAM 27 
A1AAM C13 C21 C 0 1 N N N N N N 26.427 -0.007 17.451 0.095   0.718  -0.239 C13 A1AAM 28 
A1AAM C12 C22 C 0 1 Y N N N N N 26.739 -2.399 18.065 -2.174  0.070  -0.540 C12 A1AAM 29 
A1AAM C10 C23 C 0 1 Y N N N N N 27.689 -3.232 18.643 -1.934  -0.785 -1.607 C10 A1AAM 30 
A1AAM C9  C24 C 0 1 Y N N N N N 27.315 -4.478 19.122 -2.978  -1.184 -2.418 C9  A1AAM 31 
A1AAM C8  C25 C 0 1 Y N N N N N 25.992 -4.888 19.043 -4.259  -0.723 -2.177 C8  A1AAM 32 
A1AAM C11 C26 C 0 1 Y N N N N N 25.413 -2.827 17.979 -3.463  0.527  -0.296 C11 A1AAM 33 
A1AAM C   C27 C 0 1 N N N N N N 21.592 -4.886 16.932 -6.767  -1.656 -0.440 C   A1AAM 34 
A1AAM O   O5  O 0 1 N N N N N N 21.195 -4.203 15.962 -6.982  -1.774 -1.623 O   A1AAM 35 
A1AAM N   N4  N 0 1 N N N N N N 24.779 -8.242 15.850 -8.818  1.648  2.349  N   A1AAM 36 
A1AAM H10 H2  H 0 1 N N N N N N 22.968 -3.634 18.580 -5.854  1.644  -0.458 H10 A1AAM 37 
A1AAM H11 H3  H 0 1 N N N N N N 23.436 -5.260 19.182 -6.464  0.629  -1.787 H11 A1AAM 38 
A1AAM H   H4  H 0 1 N N N N N N 23.621 -4.673 16.227 -5.973  -0.359 1.058  H   A1AAM 39 
A1AAM H16 H5  H 0 1 N N N N N N 28.146 -1.066 17.336 -1.264  0.571  1.243  H16 A1AAM 40 
A1AAM H8  H6  H 0 1 N N N N N N 22.536 -6.911 15.031 -7.970  -1.048 2.257  H8  A1AAM 41 
A1AAM H9  H7  H 0 1 N N N N N N 21.549 -7.647 16.339 -9.257  -1.388 1.052  H9  A1AAM 42 
A1AAM H7  H8  H 0 1 N N N N N N 23.122 -9.263 14.948 -10.512 0.568  1.673  H7  A1AAM 43 
A1AAM H6  H9  H 0 1 N N N N N N 23.192 -9.380 16.739 -9.870  0.047  3.260  H6  A1AAM 44 
A1AAM H3  H10 H 0 1 N N N N N N 25.426 -7.213 17.624 -6.802  1.688  1.726  H3  A1AAM 45 
A1AAM H2  H11 H 0 1 N N N N N N 25.326 -6.184 16.155 -7.952  2.465  0.604  H2  A1AAM 46 
A1AAM H1  H12 H 0 1 N N N N N N 23.157 -7.091 18.033 -8.567  0.431  -0.367 H1  A1AAM 47 
A1AAM H24 H14 H 0 1 N N N N N N 23.613 4.648  18.643 6.623   -0.208 -0.803 H24 A1AAM 48 
A1AAM H25 H15 H 0 1 N N N N N N 23.164 7.087  16.880 7.839   -0.618 1.977  H25 A1AAM 49 
A1AAM H33 H16 H 0 1 N N N N N N 21.539 7.645  18.538 8.165   -2.727 0.856  H33 A1AAM 50 
A1AAM H32 H17 H 0 1 N N N N N N 22.496 6.899  19.863 8.236   -1.951 -0.762 H32 A1AAM 51 
A1AAM H31 H18 H 0 1 N N N N N N 23.187 9.370  18.180 10.323  -1.873 1.486  H31 A1AAM 52 
A1AAM H30 H19 H 0 1 N N N N N N 23.110 9.234  19.969 10.578  -2.216 -0.253 H30 A1AAM 53 
A1AAM H29 H20 H 0 1 N N N N N N 25.034 7.994  20.000 10.524  -0.020 -0.732 H29 A1AAM 54 
A1AAM H27 H22 H 0 1 N N N N N N 25.312 6.160  18.752 8.605   1.029  -0.426 H27 A1AAM 55 
A1AAM H26 H23 H 0 1 N N N N N N 25.416 7.192  17.286 9.075   1.239  1.284  H26 A1AAM 56 
A1AAM H23 H24 H 0 1 N N N N N N 23.449 5.277  15.695 5.872   1.046  1.875  H23 A1AAM 57 
A1AAM H22 H25 H 0 1 N N N N N N 22.970 3.645  16.273 6.790   1.874  0.594  H22 A1AAM 58 
A1AAM H21 H26 H 0 1 N N N N N N 25.732 5.852  15.451 5.725   2.486  -1.500 H21 A1AAM 59 
A1AAM H19 H27 H 0 1 N N N N N N 28.079 5.126  15.366 3.623   3.076  -2.636 H19 A1AAM 60 
A1AAM H18 H28 H 0 1 N N N N N N 28.721 2.900  16.206 1.465   2.391  -1.670 H18 A1AAM 61 
A1AAM H20 H29 H 0 1 N N N N N N 24.656 2.178  17.330 3.524   0.513  1.573  H20 A1AAM 62 
A1AAM H17 H30 H 0 1 N N N N N N 28.145 1.059  17.528 1.028   0.968  1.531  H17 A1AAM 63 
A1AAM H14 H31 H 0 1 N N N N N N 28.717 -2.909 18.719 -0.933  -1.142 -1.799 H14 A1AAM 64 
A1AAM H13 H32 H 0 1 N N N N N N 28.056 -5.132 19.558 -2.792  -1.850 -3.249 H13 A1AAM 65 
A1AAM H12 H33 H 0 1 N N N N N N 25.706 -5.848 19.447 -5.072  -1.029 -2.819 H12 A1AAM 66 
A1AAM H15 H34 H 0 1 N N N N N N 24.672 -2.176 17.539 -3.653  1.193  0.533  H15 A1AAM 67 
A1AAM H5  H35 H 0 1 N N N N N N 25.387 -8.948 16.214 -9.410  2.461  2.267  H5  A1AAM 68 
A1AAM HO3 HO3 H 0 1 N N N N N N 20.241 4.152  18.877 3.700   -1.974 0.530  HO3 A1AAM 69 
A1AAM HO1 HO1 H 0 1 N N N N N N 19.938 -5.132 17.627 -6.811  -3.603 -0.089 HO1 A1AAM 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AAM C16 C19 DOUB Y N 1  
A1AAM C16 C15 SING Y N 2  
A1AAM N   C4  SING N N 3  
A1AAM N   C3  SING N N 4  
A1AAM C19 C18 SING Y N 5  
A1AAM C4  C5  SING N N 6  
A1AAM O   C   DOUB N N 7  
A1AAM C5  C2  SING N N 8  
A1AAM C15 C14 DOUB Y N 9  
A1AAM C18 C20 SING N N 10 
A1AAM C18 C17 DOUB Y N 11 
A1AAM C20 C21 SING N N 12 
A1AAM C3  C2  SING N N 13 
A1AAM C14 C17 SING Y N 14 
A1AAM C14 N2  SING N N 15 
A1AAM C   C1  SING N N 16 
A1AAM C   O1  SING N N 17 
A1AAM O4  C22 DOUB N N 18 
A1AAM C2  C1  SING N N 19 
A1AAM C1  C6  SING N N 20 
A1AAM N2  C13 SING N N 21 
A1AAM C13 O2  DOUB N N 22 
A1AAM C13 N1  SING N N 23 
A1AAM N1  C12 SING N N 24 
A1AAM C21 C23 SING N N 25 
A1AAM C21 C22 SING N N 26 
A1AAM C23 C24 SING N N 27 
A1AAM C23 C26 SING N N 28 
A1AAM C22 O3  SING N N 29 
A1AAM C11 C12 DOUB Y N 30 
A1AAM C11 C7  SING Y N 31 
A1AAM C12 C10 SING Y N 32 
A1AAM C24 N3  SING N N 33 
A1AAM C6  C7  SING N N 34 
A1AAM C7  C8  DOUB Y N 35 
A1AAM C10 C9  DOUB Y N 36 
A1AAM C26 C25 SING N N 37 
A1AAM C25 N3  SING N N 38 
A1AAM C8  C9  SING Y N 39 
A1AAM C6  H10 SING N N 40 
A1AAM C6  H11 SING N N 41 
A1AAM C1  H   SING N N 42 
A1AAM N1  H16 SING N N 43 
A1AAM C5  H8  SING N N 44 
A1AAM C5  H9  SING N N 45 
A1AAM C4  H7  SING N N 46 
A1AAM C4  H6  SING N N 47 
A1AAM C3  H3  SING N N 48 
A1AAM C3  H2  SING N N 49 
A1AAM C2  H1  SING N N 50 
A1AAM C21 H24 SING N N 51 
A1AAM C23 H25 SING N N 52 
A1AAM C26 H33 SING N N 53 
A1AAM C26 H32 SING N N 54 
A1AAM C25 H31 SING N N 55 
A1AAM C25 H30 SING N N 56 
A1AAM N3  H29 SING N N 57 
A1AAM C24 H27 SING N N 58 
A1AAM C24 H26 SING N N 59 
A1AAM C20 H23 SING N N 60 
A1AAM C20 H22 SING N N 61 
A1AAM C19 H21 SING N N 62 
A1AAM C16 H19 SING N N 63 
A1AAM C15 H18 SING N N 64 
A1AAM C17 H20 SING N N 65 
A1AAM N2  H17 SING N N 66 
A1AAM C10 H14 SING N N 67 
A1AAM C9  H13 SING N N 68 
A1AAM C8  H12 SING N N 69 
A1AAM C11 H15 SING N N 70 
A1AAM N   H5  SING N N 71 
A1AAM O3  HO3 SING N N 72 
A1AAM O1  HO1 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AAM SMILES           ACDLabs              12.01 "O=C(O)C(Cc1cc(ccc1)NC(=O)Nc1cc(CC(C2CCNC2)C(=O)O)ccc1)C1CCNC1"                                                                                                                                                                         
A1AAM InChI            InChI                1.06  "InChI=1S/C27H34N4O5/c32-25(33)23(19-7-9-28-15-19)13-17-3-1-5-21(11-17)30-27(36)31-22-6-2-4-18(12-22)14-24(26(34)35)20-8-10-29-16-20/h1-6,11-12,19-20,23-24,28-29H,7-10,13-16H2,(H,32,33)(H,34,35)(H2,30,31,36)/t19-,20-,23-,24-/m0/s1" 
A1AAM InChIKey         InChI                1.06  HICCAHJBPZUBFA-TZYAJKAJSA-N                                                                                                                                                                                                             
A1AAM SMILES_CANONICAL CACTVS               3.385 "OC(=O)[C@@H](Cc1cccc(NC(=O)Nc2cccc(C[C@@H]([C@H]3CCNC3)C(O)=O)c2)c1)[C@H]4CCNC4"                                                                                                                                                       
A1AAM SMILES           CACTVS               3.385 "OC(=O)[CH](Cc1cccc(NC(=O)Nc2cccc(C[CH]([CH]3CCNC3)C(O)=O)c2)c1)[CH]4CCNC4"                                                                                                                                                             
A1AAM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)NC(=O)Nc2cccc(c2)C[C@@H]([C@H]3CCNC3)C(=O)O)C[C@@H]([C@H]4CCNC4)C(=O)O"                                                                                                                                                     
A1AAM SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)NC(=O)Nc2cccc(c2)CC(C3CCNC3)C(=O)O)CC(C4CCNC4)C(=O)O"                                                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AAM "SYSTEMATIC NAME" ACDLabs              12.01 
;(2S,2'S)-3,3'-[carbonylbis(azanediyl-3,1-phenylene)]bis{2-[(3R)-pyrrolidin-3-yl]propanoic acid}
;
A1AAM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-3-[3-[[3-[(2~{S})-3-oxidanyl-3-oxidanylidene-2-[(3~{R})-pyrrolidin-3-yl]propyl]phenyl]carbamoylamino]phenyl]-2-[(3~{R})-pyrrolidin-3-yl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AAM "Create component" 2023-12-17 RCSB 
A1AAM "Modify charge"    2024-04-30 RCSB 
A1AAM "Modify synonyms"  2024-05-01 RCSB 
A1AAM "Initial release"  2024-05-08 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      A1AAM 
_pdbx_chem_comp_synonyms.name         LY3441732 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         "company compound code name" 
# 
