data_9SM
#

_chem_comp.id                                   9SM
_chem_comp.name                                 "(2R,3R,4R,5R,6S)-5-acetamido-6-[(2S)-2,3-bis(oxidanyl)propyl]-2,3-bis(fluoranyl)-4-oxidanyl-oxane-2-carboxylic acid"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C11 H17 F2 N O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;(2~{R},3~{R},4~{R},5~{R},6~{S})-5-acetamido-6-[(2~{S})-2,3-bis(oxidanyl)propyl]-2,3-bis(fluoranyl)-4-oxidanyl-oxane-2-c
 arboxylic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-06-07
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       313.252
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9SM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5W2U
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     9SM
_pdbx_chem_comp_synonyms.name        
;(2~{R},3~{R},4~{R},5~{R},6~{S})-5-acetamido-6-[(2~{S})-2,3-bis(oxidanyl)propyl]-2,3-bis(fluoranyl)-4-oxidanyl-oxane-2-c
 arboxylic acid
;

_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9SM  O1B   OAC  O  0  1  N  N  N  17.334  32.999  72.921  -1.277   2.966  -1.789  O1B   9SM   1  
9SM  C1    CAO  C  0  1  N  N  N  16.304  33.659  73.094  -0.283   2.366  -1.114  C1    9SM   2  
9SM  O1A   OAE  O  0  1  N  N  N  15.882  34.555  72.259   0.751   2.095  -1.677  O1A   9SM   3  
9SM  C2    CAV  C  0  1  N  N  R  15.564  33.400  74.422  -0.458   2.030   0.345  C2    9SM   4  
9SM  FAJ   FAJ  F  0  1  N  N  N  16.071  34.147  75.373  -0.324   3.194   1.110  FAJ   9SM   5  
9SM  C3    CAS  C  0  1  N  N  R  14.084  33.694  74.265  -1.849   1.430   0.567  C3    9SM   6  
9SM  FAI   FAI  F  0  1  N  N  N  13.594  33.973  75.535  -2.032   1.166   1.929  FAI   9SM   7  
9SM  C4    CAR  C  0  1  N  N  R  13.373  32.552  73.521  -1.966   0.125  -0.227  C4    9SM   8  
9SM  O4    OAG  O  0  1  N  N  N  11.994  32.797  73.759  -3.234  -0.480   0.032  O4    9SM   9  
9SM  O6    OAM  O  0  1  N  N  N  15.695  32.150  75.046   0.537   1.083   0.738  O6    9SM  10  
9SM  C6    CAU  C  0  1  N  N  S  15.132  31.030  74.366   0.506  -0.138  -0.003  C6    9SM  11  
9SM  C7    CAQ  C  0  1  N  N  N  15.680  29.879  75.192   1.627  -1.059   0.483  C7    9SM  12  
9SM  C8    CAP  C  0  1  N  N  S  17.230  30.075  75.180   2.982  -0.425   0.163  C8    9SM  13  
9SM  C9    CAK  C  0  1  N  N  N  17.925  28.752  75.236   4.100  -1.283   0.758  C9    9SM  14  
9SM  O9    OAD  O  0  1  N  N  N  17.440  28.189  76.456   5.357  -0.633   0.560  O9    9SM  15  
9SM  O8    OAF  O  0  1  N  N  N  17.883  30.936  74.152   3.147  -0.344  -1.255  O8    9SM  16  
9SM  C5    CAT  C  0  1  N  N  R  13.631  31.215  74.183  -0.846  -0.826   0.206  C5    9SM  17  
9SM  N5    NAL  N  0  1  N  N  N  13.139  30.188  73.277  -0.903  -2.048  -0.600  N5    9SM  18  
9SM  C10   CAN  C  0  1  N  N  N  12.258  29.289  73.715  -1.722  -3.056  -0.238  C10   9SM  19  
9SM  O10   OAB  O  0  1  N  N  N  11.805  29.327  74.842  -2.411  -2.951   0.754  O10   9SM  20  
9SM  C11   CAA  C  0  1  N  N  N  11.752  28.240  72.769  -1.780  -4.313  -1.067  C11   9SM  21  
9SM  HO1B  H1   H  0  0  N  N  N  17.742  33.256  72.102  -1.118   3.161  -2.722  HO1B  9SM  22  
9SM  H32   H2   H  0  1  N  N  N  13.993  34.594  73.640  -2.608   2.134   0.227  H32   9SM  23  
9SM  H4    H3   H  0  1  N  N  N  13.637  32.539  72.453  -1.875   0.338  -1.293  H4    9SM  24  
9SM  HO4   H4   H  0  1  N  Y  N  11.748  33.628  73.371  -3.990   0.068  -0.218  HO4   9SM  25  
9SM  H6    H5   H  0  1  N  N  N  15.581  30.963  73.364   0.645   0.076  -1.063  H6    9SM  26  
9SM  H7    H6   H  0  1  N  N  N  15.293  29.923  76.221   1.538  -1.202   1.560  H7    9SM  27  
9SM  H7A   H7   H  0  1  N  N  N  15.409  28.914  74.739   1.549  -2.023  -0.019  H7A   9SM  28  
9SM  H8    H8   H  0  1  N  N  N  17.453  30.557  76.143   3.025   0.576   0.591  H8    9SM  29  
9SM  H92   H9   H  0  1  N  N  N  17.652  28.125  74.375   3.925  -1.418   1.825  H92   9SM  30  
9SM  H91   H10  H  0  1  N  N  N  19.017  28.880  75.265   4.113  -2.256   0.266  H91   9SM  31  
9SM  HO9   H11  H  0  1  N  N  N  17.829  27.332  76.586   6.113  -1.122   0.914  HO9   9SM  32  
9SM  HO8   H12  H  0  1  N  N  N  18.822  30.942  74.293   3.119  -1.201  -1.703  HO8   9SM  33  
9SM  H5    H13  H  0  1  N  N  N  13.120  31.165  75.156  -0.968  -1.077   1.259  H5    9SM  34  
9SM  HN5   H14  H  0  1  N  N  N  13.460  30.157  72.331  -0.352  -2.132  -1.393  HN5   9SM  35  
9SM  H111  H15  H  0  0  N  N  N  10.996  27.623  73.276  -0.793  -4.774  -1.098  H111  9SM  36  
9SM  H113  H16  H  0  0  N  N  N  11.301  28.725  71.891  -2.492  -5.009  -0.622  H113  9SM  37  
9SM  H112  H17  H  0  0  N  N  N  12.589  27.603  72.446  -2.098  -4.066  -2.080  H112  9SM  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9SM  O1A  C1    DOUB  N  N   1  
9SM  C11  C10   SING  N  N   2  
9SM  O1B  C1    SING  N  N   3  
9SM  C1   C2    SING  N  N   4  
9SM  N5   C10   SING  N  N   5  
9SM  N5   C5    SING  N  N   6  
9SM  C4   O4    SING  N  N   7  
9SM  C4   C5    SING  N  N   8  
9SM  C4   C3    SING  N  N   9  
9SM  C10  O10   DOUB  N  N  10  
9SM  O8   C8    SING  N  N  11  
9SM  C5   C6    SING  N  N  12  
9SM  C3   C2    SING  N  N  13  
9SM  C3   FAI   SING  N  N  14  
9SM  C6   O6    SING  N  N  15  
9SM  C6   C7    SING  N  N  16  
9SM  C2   O6    SING  N  N  17  
9SM  C2   FAJ   SING  N  N  18  
9SM  C8   C7    SING  N  N  19  
9SM  C8   C9    SING  N  N  20  
9SM  C9   O9    SING  N  N  21  
9SM  O1B  HO1B  SING  N  N  22  
9SM  C3   H32   SING  N  N  23  
9SM  C4   H4    SING  N  N  24  
9SM  O4   HO4   SING  N  N  25  
9SM  C6   H6    SING  N  N  26  
9SM  C7   H7    SING  N  N  27  
9SM  C7   H7A   SING  N  N  28  
9SM  C8   H8    SING  N  N  29  
9SM  C9   H92   SING  N  N  30  
9SM  C9   H91   SING  N  N  31  
9SM  O9   HO9   SING  N  N  32  
9SM  O8   HO8   SING  N  N  33  
9SM  C5   H5    SING  N  N  34  
9SM  N5   HN5   SING  N  N  35  
9SM  C11  H111  SING  N  N  36  
9SM  C11  H113  SING  N  N  37  
9SM  C11  H112  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9SM  SMILES            ACDLabs               12.01  "OC(C1(OC(CC(CO)O)C(C(C1F)O)NC(=O)C)F)=O"  
9SM  InChI             InChI                 1.03   "InChI=1S/C11H17F2NO7/c1-4(16)14-7-6(2-5(17)3-15)21-11(13,10(19)20)9(12)8(7)18/h5-9,15,17-18H,2-3H2,1H3,(H,14,16)(H,19,20)/t5-,6-,7-,8+,9+,11+/m0/s1"  
9SM  InChIKey          InChI                 1.03   NDXUMNONGSWWQV-QYKRXNJRSA-N  
9SM  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N[C@@H]1[C@@H](O)[C@@H](F)[C@@](F)(O[C@H]1C[C@H](O)CO)C(O)=O"  
9SM  SMILES            CACTVS                3.385  "CC(=O)N[CH]1[CH](O)[CH](F)[C](F)(O[CH]1C[CH](O)CO)C(O)=O"  
9SM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(=O)N[C@H]1[C@@H](O[C@]([C@@H]([C@@H]1O)F)(C(=O)O)F)C[C@@H](CO)O"  
9SM  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(=O)NC1C(OC(C(C1O)F)(C(=O)O)F)CC(CO)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9SM  "SYSTEMATIC NAME"  ACDLabs               12.01  
;(2R,3R,4R,5R,6S)-5-(acetylamino)-6-[(2S)-2,3-dihydroxypropyl]-2,3-difluoro-4-hydroxytetrahydro-2H-pyran-2-carboxylic
acid (non-preferred name)
;
  
9SM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  
;(2~{R},3~{R},4~{R},5~{R},6~{S})-5-acetamido-6-[(2~{S})-2,3-bis(oxidanyl)propyl]-2,3-bis(fluoranyl)-4-oxidanyl-oxane-2-c
arboxylic acid
;
  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
9SM  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
9SM  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
9SM  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9SM  "Create component"          2017-06-07  RCSB  
9SM  "Initial release"           2018-02-21  RCSB  
9SM  "Other modification"        2020-07-03  RCSB  
9SM  "Modify name"               2020-07-17  RCSB  
9SM  "Modify synonyms"           2020-07-17  RCSB  
9SM  "Modify internal type"      2020-07-17  RCSB  
9SM  "Modify linking type"       2020-07-17  RCSB  
9SM  "Modify atom id"            2020-07-17  RCSB  
9SM  "Modify component atom id"  2020-07-17  RCSB  
9SM  "Modify leaving atom flag"  2020-07-17  RCSB  
##
