data_8OM
# 
_chem_comp.id                                    8OM 
_chem_comp.name                                  
;(S)-3-methyl-2-(4'-(((4-oxo-4,5,6,7-tetrahydro-3H-cyclopenta[d]pyrimidin-2-yl)thio)methyl)-[1,1'-biphenyl]-4-ylsulfonamido)butanoic acid
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H27 N3 O5 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-02-22 
_chem_comp.pdbx_modified_date                    2017-07-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        513.629 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8OM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5UWK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8OM C12 C1  C 0 1 Y N N -7.122  3.491  17.007 -2.470  -0.458 -1.033 C12 8OM 1  
8OM C13 C2  C 0 1 Y N N -7.766  3.793  15.799 -3.826  -0.714 -1.051 C13 8OM 2  
8OM C8  C3  C 0 1 N N N -4.559  0.774  22.521 3.936   0.311  0.209  C8  8OM 3  
8OM C7  C4  C 0 1 Y N N -6.202  0.597  19.130 0.477   -0.750 1.281  C7  8OM 4  
8OM C6  C5  C 0 1 Y N N -5.542  0.235  20.296 1.834   -0.498 1.298  C6  8OM 5  
8OM C4  C6  C 0 1 Y N N -5.656  2.514  21.065 1.720   0.323  -0.953 C4  8OM 6  
8OM C2  C7  C 0 1 Y N N -6.617  1.920  18.914 -0.267  -0.470 0.136  C2  8OM 7  
8OM C1  C8  C 0 1 N N N -5.907  2.675  13.298 -5.739  1.887  0.315  C1  8OM 8  
8OM O2  O1  O 0 1 N N N -5.427  1.621  13.791 -5.475  3.076  -0.251 O2  8OM 9  
8OM O1  O2  O 0 1 N N N -5.395  3.793  13.500 -5.076  1.502  1.249  O1  8OM 10 
8OM C21 C9  C 0 1 N N S -7.132  2.581  12.410 -6.861  1.032  -0.215 C21 8OM 11 
8OM C22 C10 C 0 1 N N N -6.681  2.725  10.949 -8.181  1.797  -0.101 C22 8OM 12 
8OM C17 C11 C 0 1 N N N -5.570  1.725  10.647 -8.095  3.088  -0.916 C17 8OM 13 
8OM C9  C12 C 0 1 N N N -7.791  2.493  9.927  -9.321  0.929  -0.639 C9  8OM 14 
8OM N18 N1  N 0 1 N N N -8.136  3.633  12.721 -6.943  -0.204 0.566  N18 8OM 15 
8OM S17 S1  S 0 1 N N N -9.315  3.211  13.756 -6.178  -1.573 0.032  S17 8OM 16 
8OM O19 O3  O 0 1 N N N -10.049 2.049  13.301 -6.417  -2.574 1.013  O19 8OM 17 
8OM O20 O4  O 0 1 N N N -10.199 4.345  13.885 -6.534  -1.724 -1.335 O20 8OM 18 
8OM C14 C13 C 0 1 Y N N -8.605  2.870  15.173 -4.447  -1.248 0.063  C14 8OM 19 
8OM C15 C14 C 0 1 Y N N -8.790  1.632  15.796 -3.713  -1.529 1.202  C15 8OM 20 
8OM C16 C15 C 0 1 Y N N -8.163  1.335  17.005 -2.357  -1.276 1.232  C16 8OM 21 
8OM C11 C16 C 0 1 Y N N -7.313  2.261  17.629 -1.726  -0.738 0.112  C11 8OM 22 
8OM C5  C17 C 0 1 Y N N -5.264  1.193  21.260 2.454   0.038  0.184  C5  8OM 23 
8OM C3  C18 C 0 1 Y N N -6.328  2.873  19.891 0.364   0.064  -0.985 C3  8OM 24 
8OM S10 S2  S 0 1 N N N -5.716  0.610  23.848 4.829   -1.153 -0.370 S10 8OM 25 
8OM C28 C19 C 0 1 N N N -4.810  0.127  25.214 6.487   -0.570 -0.241 C28 8OM 26 
8OM N31 N2  N 0 1 N N N -3.499  -0.195 25.056 6.712   0.651  0.199  N31 8OM 27 
8OM C34 C20 C 0 1 N N N -2.764  -0.573 26.125 7.950   1.136  0.313  C34 8OM 28 
8OM C37 C21 C 0 1 N N N -1.310  -0.966 26.184 8.431   2.490  0.790  C37 8OM 29 
8OM C36 C22 C 0 1 N N N -1.050  -1.146 27.688 9.887   2.599  0.288  C36 8OM 30 
8OM C35 C23 C 0 1 N N N -2.370  -1.047 28.479 10.306  1.116  0.183  C35 8OM 31 
8OM C33 C24 C 0 1 N N N -3.362  -0.621 27.441 9.016   0.358  -0.031 C33 8OM 32 
8OM C32 C25 C 0 1 N N N -4.783  -0.262 27.573 8.786   -0.948 -0.502 C32 8OM 33 
8OM N29 N3  N 0 1 N N N -5.421  0.087  26.430 7.515   -1.392 -0.593 N29 8OM 34 
8OM O38 O5  O 0 1 N N N -5.373  -0.276 28.676 9.719   -1.668 -0.817 O38 8OM 35 
8OM H1  H1  H 0 1 N N N -6.469  4.222  17.461 -1.985  -0.045 -1.905 H1  8OM 36 
8OM H2  H2  H 0 1 N N N -7.610  4.760  15.343 -4.403  -0.497 -1.938 H2  8OM 37 
8OM H3  H3  H 0 1 N N N -4.060  -0.192 22.354 4.161   1.155  -0.443 H3  8OM 38 
8OM H4  H4  H 0 1 N N N -3.808  1.533  22.786 4.245   0.546  1.227  H4  8OM 39 
8OM H5  H5  H 0 1 N N N -6.399  -0.151 18.377 -0.007  -1.168 2.151  H5  8OM 40 
8OM H6  H6  H 0 1 N N N -5.245  -0.792 20.453 2.412   -0.719 2.183  H6  8OM 41 
8OM H7  H7  H 0 1 N N N -5.442  3.259  21.817 2.210   0.741  -1.820 H7  8OM 42 
8OM H8  H8  H 0 1 N N N -4.658  1.834  14.306 -4.746  3.588  0.124  H8  8OM 43 
8OM H9  H9  H 0 1 N N N -7.592  1.590  12.540 -6.670  0.790  -1.261 H9  8OM 44 
8OM H10 H10 H 0 1 N N N -6.284  3.741  10.808 -8.372  2.039  0.945  H10 8OM 45 
8OM H11 H11 H 0 1 N N N -4.748  1.861  11.365 -7.905  2.846  -1.962 H11 8OM 46 
8OM H12 H12 H 0 1 N N N -5.965  0.702  10.731 -9.036  3.633  -0.835 H12 8OM 47 
8OM H13 H13 H 0 1 N N N -5.196  1.890  9.626  -7.283  3.707  -0.533 H13 8OM 48 
8OM H14 H14 H 0 1 N N N -8.614  3.199  10.113 -9.382  0.009  -0.058 H14 8OM 49 
8OM H15 H15 H 0 1 N N N -7.395  2.651  8.913  -10.262 1.473  -0.558 H15 8OM 50 
8OM H16 H16 H 0 1 N N N -8.164  1.462  10.019 -9.131  0.687  -1.685 H16 8OM 51 
8OM H17 H17 H 0 1 N N N -7.649  4.413  13.114 -7.446  -0.222 1.395  H17 8OM 52 
8OM H18 H18 H 0 1 N N N -9.429  0.894  15.333 -4.203  -1.946 2.069  H18 8OM 53 
8OM H19 H19 H 0 1 N N N -8.334  0.375  17.470 -1.785  -1.495 2.122  H19 8OM 54 
8OM H20 H20 H 0 1 N N N -6.626  3.900  19.740 -0.207  0.283  -1.875 H20 8OM 55 
8OM H21 H21 H 0 1 N N N -1.134  -1.905 25.639 7.821   3.282  0.356  H21 8OM 56 
8OM H22 H22 H 0 1 N N N -0.597  -2.133 27.862 9.926   3.083  -0.688 H22 8OM 57 
8OM H23 H23 H 0 1 N N N -2.293  -0.299 29.282 10.975  0.971  -0.666 H23 8OM 58 
8OM H24 H24 H 0 1 N N N -0.671  -0.174 25.766 8.401   2.540  1.878  H24 8OM 59 
8OM H25 H25 H 0 1 N N N -0.361  -0.361 28.033 10.509  3.128  1.010  H25 8OM 60 
8OM H26 H26 H 0 1 N N N -2.645  -2.021 28.911 10.789  0.793  1.105  H26 8OM 61 
8OM H27 H27 H 0 1 N N N -6.390  0.328  26.482 7.334   -2.291 -0.911 H27 8OM 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8OM C9  C22 SING N N 1  
8OM C17 C22 SING N N 2  
8OM C22 C21 SING N N 3  
8OM C21 N18 SING N N 4  
8OM C21 C1  SING N N 5  
8OM N18 S17 SING N N 6  
8OM C1  O1  DOUB N N 7  
8OM C1  O2  SING N N 8  
8OM O19 S17 DOUB N N 9  
8OM S17 O20 DOUB N N 10 
8OM S17 C14 SING N N 11 
8OM C14 C15 DOUB Y N 12 
8OM C14 C13 SING Y N 13 
8OM C15 C16 SING Y N 14 
8OM C13 C12 DOUB Y N 15 
8OM C16 C11 DOUB Y N 16 
8OM C12 C11 SING Y N 17 
8OM C11 C2  SING N N 18 
8OM C2  C7  DOUB Y N 19 
8OM C2  C3  SING Y N 20 
8OM C7  C6  SING Y N 21 
8OM C3  C4  DOUB Y N 22 
8OM C6  C5  DOUB Y N 23 
8OM C4  C5  SING Y N 24 
8OM C5  C8  SING N N 25 
8OM C8  S10 SING N N 26 
8OM S10 C28 SING N N 27 
8OM N31 C28 DOUB N N 28 
8OM N31 C34 SING N N 29 
8OM C28 N29 SING N N 30 
8OM C34 C37 SING N N 31 
8OM C34 C33 DOUB N N 32 
8OM C37 C36 SING N N 33 
8OM N29 C32 SING N N 34 
8OM C33 C32 SING N N 35 
8OM C33 C35 SING N N 36 
8OM C32 O38 DOUB N N 37 
8OM C36 C35 SING N N 38 
8OM C12 H1  SING N N 39 
8OM C13 H2  SING N N 40 
8OM C8  H3  SING N N 41 
8OM C8  H4  SING N N 42 
8OM C7  H5  SING N N 43 
8OM C6  H6  SING N N 44 
8OM C4  H7  SING N N 45 
8OM O2  H8  SING N N 46 
8OM C21 H9  SING N N 47 
8OM C22 H10 SING N N 48 
8OM C17 H11 SING N N 49 
8OM C17 H12 SING N N 50 
8OM C17 H13 SING N N 51 
8OM C9  H14 SING N N 52 
8OM C9  H15 SING N N 53 
8OM C9  H16 SING N N 54 
8OM N18 H17 SING N N 55 
8OM C15 H18 SING N N 56 
8OM C16 H19 SING N N 57 
8OM C3  H20 SING N N 58 
8OM C37 H21 SING N N 59 
8OM C36 H22 SING N N 60 
8OM C35 H23 SING N N 61 
8OM C37 H24 SING N N 62 
8OM C36 H25 SING N N 63 
8OM C35 H26 SING N N 64 
8OM N29 H27 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8OM SMILES           ACDLabs              12.01 "c4c(c3ccc(CSC=1NC(C2=C(N=1)CCC2)=O)cc3)ccc(c4)S(NC(C(=O)O)C(C)C)(=O)=O"                                                                                                                             
8OM InChI            InChI                1.03  "InChI=1S/C25H27N3O5S2/c1-15(2)22(24(30)31)28-35(32,33)19-12-10-18(11-13-19)17-8-6-16(7-9-17)14-34-25-26-21-5-3-4-20(21)23(29)27-25/h6-13,15,22,28H,3-5,14H2,1-2H3,(H,30,31)(H,26,27,29)/t22-/m0/s1" 
8OM InChIKey         InChI                1.03  GPMDDUDPGNYEJM-QFIPXVFZSA-N                                                                                                                                                                          
8OM SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@H](N[S](=O)(=O)c1ccc(cc1)c2ccc(CSC3=NC4=C(CCC4)C(=O)N3)cc2)C(O)=O"                                                                                                                          
8OM SMILES           CACTVS               3.385 "CC(C)[CH](N[S](=O)(=O)c1ccc(cc1)c2ccc(CSC3=NC4=C(CCC4)C(=O)N3)cc2)C(O)=O"                                                                                                                           
8OM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)[C@@H](C(=O)O)NS(=O)(=O)c1ccc(cc1)c2ccc(cc2)CSC3=NC4=C(CCC4)C(=O)N3"                                                                                                                           
8OM SMILES           "OpenEye OEToolkits" 2.0.6 "CC(C)C(C(=O)O)NS(=O)(=O)c1ccc(cc1)c2ccc(cc2)CSC3=NC4=C(CCC4)C(=O)N3"                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8OM "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(4'-{[(4-oxo-4,5,6,7-tetrahydro-3H-cyclopenta[d]pyrimidin-2-yl)sulfanyl]methyl}[1,1'-biphenyl]-4-yl)sulfonyl]-L-valine"                          
8OM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-3-methyl-2-[[4-[4-[(4-oxidanylidene-3,5,6,7-tetrahydrocyclopenta[d]pyrimidin-2-yl)sulfanylmethyl]phenyl]phenyl]sulfonylamino]butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8OM "Create component" 2017-02-22 RCSB 
8OM "Modify formula"   2017-02-24 RCSB 
8OM "Initial release"  2017-07-12 RCSB 
# 
