data_66M
# 
_chem_comp.id                                    66M 
_chem_comp.name                                  "(2R)-2-{[6-({[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]carbonyl}amino)hexanoyl]amino}butanedioic acid (non-preferred name)" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H27 N7 O9" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-02-04 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        509.470 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     66M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5HTC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
66M N1  N1  N 0 1 Y N N N N N 31.274 32.494 5.302  8.497   -0.748 -1.086 N1  66M 1  
66M C2  C1  C 0 1 Y N N N N N 32.608 30.438 6.712  10.045  0.547  0.730  C2  66M 2  
66M N3  N2  N 0 1 Y N N N N N 29.917 32.640 7.320  6.577   0.370  0.048  N3  66M 3  
66M C4  C2  C 0 1 Y N N N N N 29.975 31.946 8.500  6.573   1.225  1.109  C4  66M 4  
66M C5  C3  C 0 1 N N R N N N 28.993 33.739 6.954  5.403   -0.099 -0.692 C5  66M 5  
66M C6  C4  C 0 1 N N R N N N 27.811 33.328 6.091  4.879   -1.420 -0.087 C6  66M 6  
66M C8  C5  C 0 1 N N S N N N 27.024 34.041 8.207  3.120   0.078  -0.859 C8  66M 7  
66M C11 C6  C 0 1 N N N N N N 26.610 34.207 12.723 -1.756  0.086  -0.303 C11 66M 8  
66M C12 C7  C 0 1 N N N N N N 26.208 33.595 14.050 -2.992  0.766  0.290  C12 66M 9  
66M C14 C8  C 0 1 N N N N N N 26.728 33.315 16.538 -5.479  0.657  0.497  C14 66M 10 
66M C15 C9  C 0 1 N N N N N N 25.258 33.202 16.853 -6.712  -0.122 0.118  C15 66M 11 
66M C16 C10 C 0 1 N N R N N N 23.283 31.724 16.668 -9.124  -0.463 0.162  C16 66M 12 
66M C17 C11 C 0 1 N N N N N N 23.122 30.338 17.284 -10.340 0.466  0.183  C17 66M 13 
66M C18 C12 C 0 1 N N N N N N 21.737 30.014 17.722 -10.187 1.517  -0.886 C18 66M 14 
66M C7  C13 C 0 1 N N S N N N 26.788 32.945 7.155  3.342   -1.301 -0.199 C7  66M 15 
66M N2  N3  N 0 1 N N N N N N 33.244 29.415 7.301  10.854  1.198  1.646  N2  66M 16 
66M C9  C14 C 0 1 N N N N N N 26.693 33.534 9.591  1.903   0.748  -0.275 C9  66M 17 
66M C10 C15 C 0 1 N N N N N N 25.537 33.931 11.697 -0.504  0.876  0.082  C10 66M 18 
66M C13 C16 C 0 1 N N N N N N 27.003 34.084 15.253 -4.244  -0.024 -0.096 C13 66M 19 
66M N4  N4  N 0 1 Y N N N N N 30.913 31.026 8.539  7.790   1.427  1.522  N4  66M 20 
66M O14 O1  O 0 1 N N N N N N 24.602 34.175 17.238 -6.613  -1.122 -0.560 O14 66M 21 
66M N5  N5  N 0 1 N N N N N N 25.900 34.300 10.345 0.679   0.225  -0.485 N5  66M 22 
66M O1  O2  O 0 1 N N N N N N 27.215 32.510 10.015 2.025   1.758  0.385  O1  66M 23 
66M O   O3  O 0 1 N N N N N N 28.431 34.300 8.133  4.310   0.833  -0.544 O   66M 24 
66M O15 O4  O 0 1 N N N N N N 25.441 32.931 6.664  2.819   -2.342 -1.027 O15 66M 25 
66M O16 O5  O 0 1 N N N N N N 27.392 34.450 5.310  5.351   -2.538 -0.842 O16 66M 26 
66M C1  C17 C 0 1 Y N N N N N 31.531 31.135 7.303  8.650   0.716  0.754  C1  66M 27 
66M C   C18 C 0 1 Y N N N N N 30.930 32.126 6.539  7.882   0.030  -0.201 C   66M 28 
66M C3  C19 C 0 1 Y N N N N N 32.310 31.776 4.851  9.807   -0.877 -1.071 C3  66M 29 
66M N   N6  N 0 1 Y N N N N N 32.977 30.792 5.461  10.570  -0.252 -0.193 N   66M 30 
66M N6  N7  N 0 1 N N N N N N 24.707 32.010 16.617 -7.926  0.294  0.532  N6  66M 31 
66M C52 C20 C 0 1 N N N N N N 22.627 31.777 15.287 -9.333  -1.585 1.147  C52 66M 32 
66M O13 O6  O 0 1 N N N N N N 22.392 32.979 14.828 -10.378 -2.416 1.006  O13 66M 33 
66M O12 O7  O 0 1 N N N N N N 22.370 30.750 14.652 -8.560  -1.737 2.062  O12 66M 34 
66M O11 O8  O 0 1 N N N N N N 21.136 30.735 18.523 -9.207  1.523  -1.592 O11 66M 35 
66M H1  H1  H 0 1 N N N N N N 29.307 32.138 9.327  5.689   1.670  1.543  H1  66M 36 
66M H2  H2  H 0 1 N N N N N N 29.560 34.511 6.414  5.647   -0.233 -1.746 H2  66M 37 
66M H3  H3  H 0 1 N N N N N N 28.067 32.459 5.466  5.180   -1.508 0.957  H3  66M 38 
66M H4  H4  H 0 1 N N N N N N 26.429 34.935 7.968  3.011   -0.031 -1.938 H4  66M 39 
66M H5  H5  H 0 1 N N N N N N 27.560 33.765 12.388 -1.679  -0.929 0.086  H5  66M 40 
66M H6  H6  H 0 1 N N N N N N 26.733 35.294 12.842 -1.845  0.053  -1.389 H6  66M 41 
66M H7  H7  H 0 1 N N N N N N 25.147 33.827 14.225 -2.902  0.799  1.376  H7  66M 42 
66M H8  H8  H 0 1 N N N N N N 26.337 32.505 13.976 -3.069  1.782  -0.099 H8  66M 43 
66M H9  H9  H 0 1 N N N N N N 27.144 32.302 16.436 -5.556  1.672  0.108  H9  66M 44 
66M H10 H10 H 0 1 N N N N N N 27.226 33.834 17.370 -5.390  0.689  1.583  H10 66M 45 
66M H11 H11 H 0 1 N N N N N N 22.784 32.457 17.320 -9.000  -0.876 -0.838 H11 66M 46 
66M H12 H12 H 0 1 N N N N N N 23.429 29.592 16.536 -11.244 -0.114 -0.005 H12 66M 47 
66M H13 H13 H 0 1 N N N N N N 23.784 30.273 18.160 -10.413 0.947  1.158  H13 66M 48 
66M H15 H15 H 0 1 N N N N N N 27.055 31.968 7.584  2.884   -1.331 0.789  H15 66M 49 
66M H16 H16 H 0 1 N N N N N N 33.938 29.051 6.680  10.458  1.779  2.315  H16 66M 50 
66M H17 H17 H 0 1 N N N N N N 33.683 29.735 8.140  11.815  1.073  1.619  H17 66M 51 
66M H18 H18 H 0 1 N N N N N N 24.636 34.496 11.979 -0.581  1.892  -0.306 H18 66M 52 
66M H19 H19 H 0 1 N N N N N N 25.314 32.854 11.713 -0.415  0.909  1.168  H19 66M 53 
66M H20 H20 H 0 1 N N N N N N 28.074 33.993 15.019 -4.333  -0.056 -1.181 H20 66M 54 
66M H21 H21 H 0 1 N N N N N N 26.754 35.142 15.424 -4.166  -1.039 0.293  H21 66M 55 
66M H22 H22 H 0 1 N N N N N N 25.546 35.154 9.964  0.581   -0.584 -1.013 H22 66M 56 
66M H23 H23 H 0 1 N N N N N N 24.850 32.687 7.367  1.858   -2.316 -1.131 H23 66M 57 
66M H24 H24 H 0 1 N N N N N N 26.653 34.201 4.768  5.052   -3.394 -0.506 H24 66M 58 
66M H25 H25 H 0 1 N N N N N N 32.654 32.026 3.858  10.275  -1.517 -1.804 H25 66M 59 
66M H26 H26 H 0 1 N N N N N N 25.321 31.255 16.387 -8.005  1.094  1.074  H26 66M 60 
66M H27 H27 H 0 1 N N N N N N 22.007 32.918 13.961 -10.470 -3.120 1.662  H27 66M 61 
66M O2  O9  O 0 1 N Y N N N N ?      ?      ?      -11.141 2.447  -1.055 O2  66M 62 
66M H14 H14 H 0 1 N N N N N N ?      ?      ?      -10.998 3.100  -1.753 H14 66M 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
66M C3  N1  DOUB Y N 1  
66M C3  N   SING Y N 2  
66M N1  C   SING Y N 3  
66M O16 C6  SING N N 4  
66M N   C2  DOUB Y N 5  
66M C6  C5  SING N N 6  
66M C6  C7  SING N N 7  
66M C   C1  DOUB Y N 8  
66M C   N3  SING Y N 9  
66M O15 C7  SING N N 10 
66M C2  N2  SING N N 11 
66M C2  C1  SING Y N 12 
66M C5  N3  SING N N 13 
66M C5  O   SING N N 14 
66M C7  C8  SING N N 15 
66M C1  N4  SING Y N 16 
66M N3  C4  SING Y N 17 
66M O   C8  SING N N 18 
66M C8  C9  SING N N 19 
66M C4  N4  DOUB Y N 20 
66M C9  O1  DOUB N N 21 
66M C9  N5  SING N N 22 
66M N5  C10 SING N N 23 
66M C10 C11 SING N N 24 
66M C11 C12 SING N N 25 
66M C12 C13 SING N N 26 
66M O12 C52 DOUB N N 27 
66M O13 C52 SING N N 28 
66M C13 C14 SING N N 29 
66M C52 C16 SING N N 30 
66M C14 C15 SING N N 31 
66M N6  C16 SING N N 32 
66M N6  C15 SING N N 33 
66M C16 C17 SING N N 34 
66M C15 O14 DOUB N N 35 
66M C17 C18 SING N N 36 
66M C18 O11 DOUB N N 37 
66M C4  H1  SING N N 38 
66M C5  H2  SING N N 39 
66M C6  H3  SING N N 40 
66M C8  H4  SING N N 41 
66M C11 H5  SING N N 42 
66M C11 H6  SING N N 43 
66M C12 H7  SING N N 44 
66M C12 H8  SING N N 45 
66M C14 H9  SING N N 46 
66M C14 H10 SING N N 47 
66M C16 H11 SING N N 48 
66M C17 H12 SING N N 49 
66M C17 H13 SING N N 50 
66M C7  H15 SING N N 51 
66M N2  H16 SING N N 52 
66M N2  H17 SING N N 53 
66M C10 H18 SING N N 54 
66M C10 H19 SING N N 55 
66M C13 H20 SING N N 56 
66M C13 H21 SING N N 57 
66M N5  H22 SING N N 58 
66M O15 H23 SING N N 59 
66M O16 H24 SING N N 60 
66M C3  H25 SING N N 61 
66M N6  H26 SING N N 62 
66M O13 H27 SING N N 63 
66M C18 O2  SING N N 64 
66M O2  H14 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
66M SMILES           ACDLabs              12.01 "n1c2n(cnc2c(N)nc1)C3OC(C(=O)NCCCCCC(=O)NC(CC(=O)O)C(O)=O)C(C3O)O"                                                                                                                                                                        
66M InChI            InChI                1.03  "InChI=1S/C20H27N7O9/c21-16-12-17(24-7-23-16)27(8-25-12)19-14(32)13(31)15(36-19)18(33)22-5-3-1-2-4-10(28)26-9(20(34)35)6-11(29)30/h7-9,13-15,19,31-32H,1-6H2,(H,22,33)(H,26,28)(H,29,30)(H,34,35)(H2,21,23,24)/t9-,13+,14-,15+,19-/m1/s1" 
66M InChIKey         InChI                1.03  MMQKVHWBTLHGSP-ZXQBGJJXSA-N                                                                                                                                                                                                               
66M SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]([C@@H](O)[C@H]3O)C(=O)NCCCCCC(=O)N[C@H](CC(O)=O)C(O)=O"                                                                                                                                                   
66M SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH]([CH](O)[CH]3O)C(=O)NCCCCCC(=O)N[CH](CC(O)=O)C(O)=O"                                                                                                                                                           
66M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)C(=O)NCCCCCC(=O)N[C@H](CC(=O)O)C(=O)O)O)O)N"                                                                                                                                              
66M SMILES           "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)C(=O)NCCCCCC(=O)NC(CC(=O)O)C(=O)O)O)O)N"                                                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
66M "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-2-{[6-({[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]carbonyl}amino)hexanoyl]amino}butanedioic acid (non-preferred name)" 
66M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{R})-2-[6-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylamino]hexanoylamino]butanedioic acid"                    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
66M "Create component" 2016-02-04 EBI  
66M "Initial release"  2016-03-16 RCSB 
66M "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            66M 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C18 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
