data_5YM
#

_chem_comp.id                                   5YM
_chem_comp.name                                 "(Z)-N-(2-hydroxyethyl)octadec-9-enamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H39 N O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-08-25
_chem_comp.pdbx_modified_date                   2022-05-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       325.529
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5YM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7V7W
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5YM  C13  C1   C  0  1  N  N  N  17.646  12.433  25.373   -0.742  -1.259   0.549  C13  5YM   1  
5YM  C12  C2   C  0  1  N  N  N  16.301  11.766  25.196    0.166  -2.428   0.159  C12  5YM   2  
5YM  C11  C3   C  0  1  N  N  N  16.023  11.250  23.808    1.599  -2.132   0.607  C11  5YM   3  
5YM  C10  C4   C  0  1  N  N  N  15.068  10.120  23.975    2.493  -3.283   0.223  C10  5YM   4  
5YM  C14  C5   C  0  1  N  N  N  17.957  12.489  26.849   -2.174  -1.555   0.101  C14  5YM   5  
5YM  C15  C6   C  0  1  N  N  N  18.868  13.634  27.178   -3.082  -0.387   0.491  C15  5YM   6  
5YM  C21  C7   C  0  1  N  N  N  22.984  12.136  31.427   -9.185   0.807  -0.198  C21  5YM   7  
5YM  C16  C8   C  0  1  N  N  N  19.513  13.384  28.523   -4.515  -0.682   0.043  C16  5YM   8  
5YM  C17  C9   C  0  1  N  N  N  21.008  13.626  28.495   -5.423   0.486   0.434  C17  5YM   9  
5YM  C18  C10  C  0  1  N  N  N  21.714  13.582  29.830   -6.834   0.195  -0.008  C18  5YM  10  
5YM  C22  C11  C  0  1  N  N  N  24.266  12.918  31.376  -10.092   1.975   0.193  C22  5YM  11  
5YM  C01  C12  C  0  1  N  N  N  18.431   3.603  18.608   11.230   3.295   0.405  C01  5YM  12  
5YM  C02  C13  C  0  1  N  N  N  17.703   4.296  19.724    9.783   3.136  -0.065  C02  5YM  13  
5YM  C03  C14  C  0  1  N  N  N  18.139   5.723  19.811    9.318   1.701   0.191  C03  5YM  14  
5YM  C04  C15  C  0  1  N  N  N  16.998   6.568  20.232    7.871   1.542  -0.280  C04  5YM  15  
5YM  C05  C16  C  0  1  N  N  N  16.656   7.553  19.156    7.407   0.106  -0.024  C05  5YM  16  
5YM  C06  C17  C  0  1  N  N  N  15.707   8.563  19.718    5.959  -0.053  -0.494  C06  5YM  17  
5YM  C07  C18  C  0  1  N  N  N  15.954   8.788  21.151    5.495  -1.488  -0.239  C07  5YM  18  
5YM  C08  C19  C  0  1  N  N  N  15.082   9.885  21.605    4.048  -1.647  -0.709  C08  5YM  19  
5YM  C09  C20  C  0  1  N  N  N  14.629   9.482  22.953    3.590  -3.060  -0.457  C09  5YM  20  
5YM  N20  N1   N  0  1  N  N  N  22.240  12.304  30.248   -7.813   1.089   0.231  N20  5YM  21  
5YM  O19  O1   O  0  1  N  N  N  21.838  14.574  30.458   -7.089  -0.845  -0.578  O19  5YM  22  
5YM  O23  O2   O  0  1  N  N  N  24.948  12.612  30.236   -9.703   3.143  -0.532  O23  5YM  23  
5YM  H1   H1   H  0  1  N  N  N  18.421  11.852  24.851   -0.719  -1.128   1.631  H1   5YM  24  
5YM  H2   H2   H  0  1  N  N  N  17.613  13.452  24.961   -0.390  -0.348   0.065  H2   5YM  25  
5YM  H3   H3   H  0  1  N  N  N  15.521  12.499  25.450   -0.186  -3.338   0.643  H3   5YM  26  
5YM  H4   H4   H  0  1  N  N  N  16.247  10.917  25.893    0.144  -2.559  -0.923  H4   5YM  27  
5YM  H5   H5   H  0  1  N  N  N  16.953  10.898  23.337    1.950  -1.221   0.123  H5   5YM  28  
5YM  H6   H6   H  0  1  N  N  N  15.575  12.041  23.189    1.621  -2.000   1.689  H6   5YM  29  
5YM  H7   H7   H  0  1  N  N  N  14.742   9.835  24.965    2.229  -4.290   0.508  H7   5YM  30  
5YM  H8   H8   H  0  1  N  N  N  17.017  12.609  27.408   -2.197  -1.687  -0.981  H8   5YM  31  
5YM  H9   H9   H  0  1  N  N  N  18.444  11.549  27.147   -2.526  -2.466   0.586  H9   5YM  32  
5YM  H10  H10  H  0  1  N  N  N  19.647  13.718  26.406   -3.060  -0.255   1.573  H10  5YM  33  
5YM  H11  H11  H  0  1  N  N  N  18.287  14.567  27.216   -2.731   0.524   0.007  H11  5YM  34  
5YM  H12  H12  H  0  1  N  N  N  22.385  12.484  32.282   -9.536  -0.104   0.287  H12  5YM  35  
5YM  H13  H13  H  0  1  N  N  N  23.219  11.069  31.554   -9.207   0.675  -1.280  H13  5YM  36  
5YM  H14  H14  H  0  1  N  N  N  19.059  14.058  29.264   -4.537  -0.814  -1.038  H14  5YM  37  
5YM  H15  H15  H  0  1  N  N  N  19.329  12.340  28.816   -4.867  -1.593   0.528  H15  5YM  38  
5YM  H16  H16  H  0  1  N  N  N  21.461  12.858  27.850   -5.400   0.618   1.515  H16  5YM  39  
5YM  H17  H17  H  0  1  N  N  N  21.179  14.620  28.057   -5.071   1.397  -0.051  H17  5YM  40  
5YM  H18  H18  H  0  1  N  N  N  24.884  12.664  32.250  -11.127   1.727  -0.046  H18  5YM  41  
5YM  H19  H19  H  0  1  N  N  N  24.038  13.994  31.388  -10.002   2.164   1.262  H19  5YM  42  
5YM  H20  H20  H  0  1  N  N  N  18.104   2.554  18.552   11.869   2.603  -0.144  H20  5YM  43  
5YM  H21  H21  H  0  1  N  N  N  18.209   4.108  17.656   11.561   4.317   0.223  H21  5YM  44  
5YM  H22  H22  H  0  1  N  N  N  19.514   3.640  18.798   11.292   3.077   1.472  H22  5YM  45  
5YM  H23  H23  H  0  1  N  N  N  16.621   4.257  19.532    9.144   3.828   0.485  H23  5YM  46  
5YM  H24  H24  H  0  1  N  N  N  17.926   3.789  20.674    9.721   3.353  -1.131  H24  5YM  47  
5YM  H25  H25  H  0  1  N  N  N  18.952   5.813  20.547    9.957   1.009  -0.359  H25  5YM  48  
5YM  H26  H26  H  0  1  N  N  N  18.497   6.057  18.826    9.380   1.483   1.257  H26  5YM  49  
5YM  H27  H27  H  0  1  N  N  N  17.268   7.112  21.149    7.233   2.233   0.270  H27  5YM  50  
5YM  H28  H28  H  0  1  N  N  N  16.125   5.928  20.429    7.810   1.759  -1.346  H28  5YM  51  
5YM  H29  H29  H  0  1  N  N  N  16.183   7.030  18.311    8.045  -0.585  -0.573  H29  5YM  52  
5YM  H30  H30  H  0  1  N  N  N  17.571   8.056  18.810    7.468  -0.111   1.042  H30  5YM  53  
5YM  H31  H31  H  0  1  N  N  N  15.834   9.513  19.179    5.321   0.639   0.055  H31  5YM  54  
5YM  H32  H32  H  0  1  N  N  N  14.677   8.200  19.584    5.898   0.165  -1.561  H32  5YM  55  
5YM  H33  H33  H  0  1  N  N  N  15.725   7.873  21.716    6.133  -2.180  -0.788  H33  5YM  56  
5YM  H34  H34  H  0  1  N  N  N  17.008   9.061  21.308    5.556  -1.705   0.827  H34  5YM  57  
5YM  H35  H35  H  0  1  N  N  N  15.643  10.830  21.652    3.409  -0.955  -0.160  H35  5YM  58  
5YM  H36  H36  H  0  1  N  N  N  14.223  10.002  20.928    3.986  -1.429  -1.775  H36  5YM  59  
5YM  H37  H37  H  0  1  N  N  N  13.938   8.661  23.076    4.167  -3.891  -0.838  H37  5YM  60  
5YM  H38  H38  H  0  1  N  N  N  22.067  11.504  29.673   -7.609   1.921   0.688  H38  5YM  61  
5YM  H39  H39  H  0  1  N  N  N  25.758  13.108  30.208  -10.237   3.925  -0.334  H39  5YM  62  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5YM  C01  C02  SING  N  N   1  
5YM  C05  C06  SING  N  N   2  
5YM  C05  C04  SING  N  N   3  
5YM  C06  C07  SING  N  N   4  
5YM  C02  C03  SING  N  N   5  
5YM  C03  C04  SING  N  N   6  
5YM  C07  C08  SING  N  N   7  
5YM  C08  C09  SING  N  N   8  
5YM  C09  C10  DOUB  N  Z   9  
5YM  C11  C10  SING  N  N  10  
5YM  C11  C12  SING  N  N  11  
5YM  C12  C13  SING  N  N  12  
5YM  C13  C14  SING  N  N  13  
5YM  C14  C15  SING  N  N  14  
5YM  C15  C16  SING  N  N  15  
5YM  C17  C16  SING  N  N  16  
5YM  C17  C18  SING  N  N  17  
5YM  C18  N20  SING  N  N  18  
5YM  C18  O19  DOUB  N  N  19  
5YM  O23  C22  SING  N  N  20  
5YM  N20  C21  SING  N  N  21  
5YM  C22  C21  SING  N  N  22  
5YM  C13  H1   SING  N  N  23  
5YM  C13  H2   SING  N  N  24  
5YM  C12  H3   SING  N  N  25  
5YM  C12  H4   SING  N  N  26  
5YM  C11  H5   SING  N  N  27  
5YM  C11  H6   SING  N  N  28  
5YM  C10  H7   SING  N  N  29  
5YM  C14  H8   SING  N  N  30  
5YM  C14  H9   SING  N  N  31  
5YM  C15  H10  SING  N  N  32  
5YM  C15  H11  SING  N  N  33  
5YM  C21  H12  SING  N  N  34  
5YM  C21  H13  SING  N  N  35  
5YM  C16  H14  SING  N  N  36  
5YM  C16  H15  SING  N  N  37  
5YM  C17  H16  SING  N  N  38  
5YM  C17  H17  SING  N  N  39  
5YM  C22  H18  SING  N  N  40  
5YM  C22  H19  SING  N  N  41  
5YM  C01  H20  SING  N  N  42  
5YM  C01  H21  SING  N  N  43  
5YM  C01  H22  SING  N  N  44  
5YM  C02  H23  SING  N  N  45  
5YM  C02  H24  SING  N  N  46  
5YM  C03  H25  SING  N  N  47  
5YM  C03  H26  SING  N  N  48  
5YM  C04  H27  SING  N  N  49  
5YM  C04  H28  SING  N  N  50  
5YM  C05  H29  SING  N  N  51  
5YM  C05  H30  SING  N  N  52  
5YM  C06  H31  SING  N  N  53  
5YM  C06  H32  SING  N  N  54  
5YM  C07  H33  SING  N  N  55  
5YM  C07  H34  SING  N  N  56  
5YM  C08  H35  SING  N  N  57  
5YM  C08  H36  SING  N  N  58  
5YM  C09  H37  SING  N  N  59  
5YM  N20  H38  SING  N  N  60  
5YM  O23  H39  SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5YM  InChI             InChI                 1.03   "InChI=1S/C20H39NO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-20(23)21-18-19-22/h9-10,22H,2-8,11-19H2,1H3,(H,21,23)/b10-9-"  
5YM  InChIKey          InChI                 1.03   BOWVQLFMWHZBEF-KTKRTIGZSA-N  
5YM  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCCC\C=C/CCCCCCCC(=O)NCCO"  
5YM  SMILES            CACTVS                3.385  "CCCCCCCCC=CCCCCCCCC(=O)NCCO"  
5YM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCCCCCC/C=C\CCCCCCCC(=O)NCCO"  
5YM  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCCCCCCC=CCCCCCCCC(=O)NCCO"  
#
_pdbx_chem_comp_identifier.comp_id          5YM
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(~{Z})-~{N}-(2-hydroxyethyl)octadec-9-enamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5YM  "Create component"  2021-08-25  PDBJ  
5YM  "Initial release"   2022-05-18  RCSB  
##
