data_5NM
#

_chem_comp.id                                   5NM
_chem_comp.name                                 "3-[[5-bromanyl-1-(3-methylsulfonylpropyl)benzimidazol-2-yl]methyl]-1-cyclopropyl-imidazo[4,5-c]pyridin-2-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H22 Br N5 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        JNJ-49153390
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-10-27
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       504.400
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5NM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5EA4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5NM  C10  C1   C   0  1  N  N  N  19.905  19.767  18.379  -1.554   0.164  -1.500  C10  5NM   1  
5NM  C13  C2   C   0  1  N  N  N  19.282  14.720  18.151  -4.919   1.735   1.807  C13  5NM   2  
5NM  C15  C3   C   0  1  N  N  N  17.955  14.542  17.427  -6.133   0.812   1.681  C15  5NM   3  
5NM  C22  C4   C   0  1  Y  N  N  20.735  15.486  20.964  -3.990   4.173  -0.084  C22  5NM   4  
5NM  C24  C5   C   0  1  Y  N  N  21.115  18.429  21.153  -2.139   3.306  -1.903  C24  5NM   5  
5NM  C26  C6   C   0  1  N  N  N  16.207  18.280  19.148   0.086  -2.991  -0.185  C26  5NM   6  
5NM  C28  C7   C   0  1  Y  N  N  15.527  22.110  22.284   3.862   0.110   1.144  C28  5NM   7  
5NM  C01  C8   C   0  1  N  N  N  19.405  17.302  17.873  -3.254   0.674   0.267  C01  5NM   8  
5NM  N02  N1   N   0  1  N  N  N  19.921  18.367  18.700  -2.464   1.042  -0.760  N02  5NM   9  
5NM  N03  N2   N   0  1  N  N  N  19.623  16.055  18.576  -3.955   1.738   0.705  N03  5NM  10  
5NM  C04  C9   C   0  1  Y  N  N  19.001  20.427  19.421  -0.167   0.278  -0.924  C04  5NM  11  
5NM  N05  N3   N   0  1  Y  N  N  19.396  21.227  20.461   0.697   1.200  -1.237  N05  5NM  12  
5NM  C06  C10  C   0  1  Y  N  N  20.449  17.790  19.917  -2.661   2.399  -0.998  C06  5NM  13  
5NM  C07  C11  C   0  1  Y  N  N  20.266  16.364  19.840  -3.608   2.837  -0.065  C07  5NM  14  
5NM  N08  N4   N   0  1  Y  N  N  17.626  20.292  19.463   0.366  -0.568  -0.002  N08  5NM  15  
5NM  C09  C12  C   0  1  Y  N  N  18.281  21.599  21.150   1.842   1.010  -0.533  C09  5NM  16  
5NM  C11  C13  C   0  1  Y  N  N  17.177  21.013  20.529   1.647  -0.128   0.268  C11  5NM  17  
5NM  S12  S1   S   0  1  N  N  N  14.272  16.375  18.929  -0.152  -5.699  -0.486  S12  5NM  18  
5NM  C14  C14  C   0  1  N  N  N  19.267  14.421  16.659  -5.010   0.469   2.663  C14  5NM  19  
5NM  C16  C15  C   0  1  Y  N  N  18.086  22.501  22.411   3.065   1.685  -0.484  C16  5NM  20  
5NM  O17  O1   O   0  1  N  N  N  18.884  17.458  16.779  -3.325  -0.449   0.730  O17  5NM  21  
5NM  C18  C16  C   0  1  Y  N  N  15.725  21.250  21.069   2.664  -0.570   1.103  C18  5NM  22  
5NM  O19  O2   O   0  1  N  N  N  13.713  16.698  20.220  -0.683  -5.597  -1.800  O19  5NM  23  
5NM  O20  O3   O   0  1  N  N  N  15.230  15.349  19.260   1.240  -5.931  -0.316  O20  5NM  24  
5NM  N21  N5   N   0  1  Y  N  N  21.578  17.574  22.264  -2.527   4.568  -1.882  N21  5NM  25  
5NM  C23  C17  C   0  1  Y  N  N  16.704  22.728  22.944   4.060   1.235   0.355  C23  5NM  26  
5NM  C25  C18  C   0  1  N  N  N  16.830  19.534  18.519  -0.296  -1.731   0.595  C25  5NM  27  
5NM  C27  C19  C   0  1  N  N  N  15.077  17.801  18.211  -0.605  -4.205   0.438  C27  5NM  28  
5NM  C29  C20  C   0  1  N  N  N  13.018  15.788  17.796  -1.066  -6.985   0.409  C29  5NM  29  
5NM  BR3  BR1  BR  0  0  N  N  N  16.471  23.824  24.490   5.710   2.157   0.432  BR3  5NM  30  
5NM  C31  C21  C   0  1  Y  N  N  21.395  16.107  22.190  -3.422   5.014  -1.020  C31  5NM  31  
5NM  H1   H1   H   0  1  N  N  N  20.921  20.184  18.436  -1.898  -0.867  -1.418  H1   5NM  32  
5NM  H2   H2   H   0  1  N  N  N  19.500  19.923  17.368  -1.538   0.459  -2.549  H2   5NM  33  
5NM  H3   H3   H   0  1  N  N  N  19.587  13.888  18.803  -5.065   2.692   2.308  H3   5NM  34  
5NM  H4   H4   H   0  1  N  N  N  17.298  15.409  17.261  -7.077   1.162   2.098  H4   5NM  35  
5NM  H5   H5   H   0  1  N  N  N  17.342  13.648  17.613  -6.214   0.208   0.777  H5   5NM  36  
5NM  H6   H6   H   0  1  N  N  N  20.605  14.416  20.904  -4.721   4.545   0.618  H6   5NM  37  
5NM  H7   H7   H   0  1  N  N  N  21.242  19.500  21.206  -1.404   2.983  -2.625  H7   5NM  38  
5NM  H8   H8   H   0  1  N  N  N  15.795  18.522  20.139  -0.229  -2.886  -1.223  H8   5NM  39  
5NM  H9   H9   H   0  1  N  N  N  16.969  17.493  19.250   1.167  -3.128  -0.145  H9   5NM  40  
5NM  H10  H10  H   0  1  N  N  N  14.534  22.278  22.675   4.650  -0.232   1.799  H10  5NM  41  
5NM  H11  H11  H   0  1  N  N  N  19.601  13.439  16.291  -4.352  -0.361   2.405  H11  5NM  42  
5NM  H12  H12  H   0  1  N  N  N  19.557  15.200  15.939  -5.215   0.594   3.726  H12  5NM  43  
5NM  H13  H13  H   0  1  N  N  N  18.938  22.956  22.893   3.226   2.560  -1.095  H13  5NM  44  
5NM  H14  H14  H   0  1  N  N  N  14.877  20.800  20.573   2.516  -1.444   1.720  H14  5NM  45  
5NM  H15  H15  H   0  1  N  N  N  17.474  19.226  17.682  -1.377  -1.593   0.555  H15  5NM  46  
5NM  H16  H16  H   0  1  N  N  N  16.022  20.178  18.142   0.020  -1.836   1.633  H16  5NM  47  
5NM  H17  H17  H   0  1  N  N  N  15.502  17.529  17.234  -0.290  -4.310   1.476  H17  5NM  48  
5NM  H18  H18  H   0  1  N  N  N  14.342  18.609  18.079  -1.686  -4.068   0.399  H18  5NM  49  
5NM  H19  H19  H   0  1  N  N  N  12.515  14.910  18.227  -0.737  -7.008   1.448  H19  5NM  50  
5NM  H20  H20  H   0  1  N  N  N  12.279  16.584  17.622  -2.133  -6.766   0.371  H20  5NM  51  
5NM  H21  H21  H   0  1  N  N  N  13.488  15.509  16.841  -0.877  -7.954  -0.053  H21  5NM  52  
5NM  H22  H22  H   0  1  N  N  N  21.728  15.478  23.002  -3.714   6.053  -1.047  H22  5NM  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5NM  C14  C15  SING  N  N   1  
5NM  C14  C13  SING  N  N   2  
5NM  O17  C01  DOUB  N  N   3  
5NM  C15  C13  SING  N  N   4  
5NM  C29  S12  SING  N  N   5  
5NM  C01  N03  SING  N  N   6  
5NM  C01  N02  SING  N  N   7  
5NM  C13  N03  SING  N  N   8  
5NM  C27  S12  SING  N  N   9  
5NM  C27  C26  SING  N  N  10  
5NM  C10  N02  SING  N  N  11  
5NM  C10  C04  SING  N  N  12  
5NM  C25  C26  SING  N  N  13  
5NM  C25  N08  SING  N  N  14  
5NM  N03  C07  SING  N  N  15  
5NM  N02  C06  SING  N  N  16  
5NM  S12  O20  DOUB  N  N  17  
5NM  S12  O19  DOUB  N  N  18  
5NM  C04  N08  SING  Y  N  19  
5NM  C04  N05  DOUB  Y  N  20  
5NM  N08  C11  SING  Y  N  21  
5NM  C07  C06  DOUB  Y  N  22  
5NM  C07  C22  SING  Y  N  23  
5NM  C06  C24  SING  Y  N  24  
5NM  N05  C09  SING  Y  N  25  
5NM  C11  C18  DOUB  Y  N  26  
5NM  C11  C09  SING  Y  N  27  
5NM  C22  C31  DOUB  Y  N  28  
5NM  C18  C28  SING  Y  N  29  
5NM  C09  C16  DOUB  Y  N  30  
5NM  C24  N21  DOUB  Y  N  31  
5NM  C31  N21  SING  Y  N  32  
5NM  C28  C23  DOUB  Y  N  33  
5NM  C16  C23  SING  Y  N  34  
5NM  C23  BR3  SING  N  N  35  
5NM  C10  H1   SING  N  N  36  
5NM  C10  H2   SING  N  N  37  
5NM  C13  H3   SING  N  N  38  
5NM  C15  H4   SING  N  N  39  
5NM  C15  H5   SING  N  N  40  
5NM  C22  H6   SING  N  N  41  
5NM  C24  H7   SING  N  N  42  
5NM  C26  H8   SING  N  N  43  
5NM  C26  H9   SING  N  N  44  
5NM  C28  H10  SING  N  N  45  
5NM  C14  H11  SING  N  N  46  
5NM  C14  H12  SING  N  N  47  
5NM  C16  H13  SING  N  N  48  
5NM  C18  H14  SING  N  N  49  
5NM  C25  H15  SING  N  N  50  
5NM  C25  H16  SING  N  N  51  
5NM  C27  H17  SING  N  N  52  
5NM  C27  H18  SING  N  N  53  
5NM  C29  H19  SING  N  N  54  
5NM  C29  H20  SING  N  N  55  
5NM  C29  H21  SING  N  N  56  
5NM  C31  H22  SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5NM  InChI             InChI                 1.03   "InChI=1S/C21H22BrN5O3S/c1-31(29,30)10-2-9-25-17-6-3-14(22)11-16(17)24-20(25)13-26-19-12-23-8-7-18(19)27(21(26)28)15-4-5-15/h3,6-8,11-12,15H,2,4-5,9-10,13H2,1H3"  
5NM  InChIKey          InChI                 1.03   WHMBFIMJAWFSJJ-UHFFFAOYSA-N  
5NM  SMILES_CANONICAL  CACTVS                3.385  "C[S](=O)(=O)CCCn1c(CN2C(=O)N(C3CC3)c4ccncc24)nc5cc(Br)ccc15"  
5NM  SMILES            CACTVS                3.385  "C[S](=O)(=O)CCCn1c(CN2C(=O)N(C3CC3)c4ccncc24)nc5cc(Br)ccc15"  
5NM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "CS(=O)(=O)CCCn1c2ccc(cc2nc1CN3c4cnccc4N(C3=O)C5CC5)Br"  
5NM  SMILES            "OpenEye OEToolkits"  2.0.4  "CS(=O)(=O)CCCn1c2ccc(cc2nc1CN3c4cnccc4N(C3=O)C5CC5)Br"  
#
_pdbx_chem_comp_identifier.comp_id          5NM
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.4
_pdbx_chem_comp_identifier.identifier       "3-[[5-bromanyl-1-(3-methylsulfonylpropyl)benzimidazol-2-yl]methyl]-1-cyclopropyl-imidazo[4,5-c]pyridin-2-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5NM  "Create component"  2015-10-27  RCSB  
5NM  "Initial release"   2015-12-09  RCSB  
5NM  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     5NM
_pdbx_chem_comp_synonyms.name        JNJ-49153390
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
