data_3GM
# 
_chem_comp.id                                    3GM 
_chem_comp.name                                  "(2s)-6-[[(1r,2s)-2-(4-azanylbutanoylamino)-2,3-dihydro-1h-inden-1-yl]methyl]-2-(3-hydroxy-3-oxopropyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H30 N2 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-11-13 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        482.526 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3GM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4CF2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3GM C1   C1   C 0 1 Y N N 8.246  -40.779 1.006  0.876   -5.102 -0.166 C1   3GM 1  
3GM C2   C2   C 0 1 Y N N 9.068  -41.079 -0.057 -0.129  -4.251 -0.587 C2   3GM 2  
3GM C3   C3   C 0 1 Y N N 7.750  -41.789 1.799  2.132   -4.600 0.113  C3   3GM 3  
3GM C4   C4   C 0 1 Y N N 9.403  -42.383 -0.341 0.126   -2.901 -0.730 C4   3GM 4  
3GM C5   C5   C 0 1 Y N N 11.385 -44.623 -1.501 -0.822  -0.893 1.429  C5   3GM 5  
3GM C6   C6   C 0 1 Y N N 12.411 -44.563 -2.412 -2.202  -0.776 1.418  C6   3GM 6  
3GM C7   C7   C 0 1 Y N N 12.918 -45.295 0.200  -0.650  0.941  -0.113 C7   3GM 7  
3GM C8   C8   C 0 1 Y N N 8.095  -43.084 1.508  2.390   -3.247 -0.030 C8   3GM 8  
3GM C9   C9   C 0 1 Y N N 8.904  -43.390 0.455  1.385   -2.396 -0.452 C9   3GM 9  
3GM C10  C10  C 0 1 Y N N 11.625 -44.989 -0.190 -0.045  -0.044 0.673  C10  3GM 10 
3GM C11  C11  C 0 1 Y N N 13.688 -44.864 -2.012 -2.817  0.196  0.645  C11  3GM 11 
3GM C12  C12  C 0 1 Y N N 13.943 -45.234 -0.715 -2.047  1.059  -0.126 C12  3GM 12 
3GM C13  C13  C 0 1 N N N 13.244 -45.695 1.593  0.177   1.852  -0.926 C13  3GM 13 
3GM C14  C14  C 0 1 N N N 9.135  -47.560 1.768  5.355   0.320  -0.049 C14  3GM 14 
3GM C15  C15  C 0 1 N N N 17.620 -44.344 -5.048 -8.470  0.359  0.316  C15  3GM 15 
3GM C16  C16  C 0 1 N N N 7.662  -44.287 2.243  3.661   -2.460 0.207  C16  3GM 16 
3GM C17  C17  C 0 1 N N N 16.092 -44.624 -0.937 -3.989  2.345  -0.592 C17  3GM 17 
3GM C18  C18  C 0 1 N N R 9.130  -44.853 0.354  1.913   -0.979 -0.528 C18  3GM 18 
3GM C19  C19  C 0 1 N N S 8.026  -45.396 1.273  3.450   -1.120 -0.530 C19  3GM 19 
3GM C20  C20  C 0 1 N N S 15.996 -44.794 -2.436 -4.773  1.036  -0.416 C20  3GM 20 
3GM C21  C21  C 0 1 N N N 10.544 -45.069 0.845  1.456   -0.177 0.692  C21  3GM 21 
3GM C22  C22  C 0 1 N N N 9.916  -47.961 2.987  5.999   1.454  0.706  C22  3GM 22 
3GM C23  C23  C 0 1 N N N 18.008 -44.040 -3.630 -7.034  0.049  -0.021 C23  3GM 23 
3GM C24  C24  C 0 1 N N N 16.677 -43.619 -3.087 -6.231  1.350  -0.073 C24  3GM 24 
3GM C25  C25  C 0 1 N N N 9.483  -49.323 3.484  7.443   1.629  0.232  C25  3GM 25 
3GM C26  C26  C 0 1 N N N 9.146  -49.276 4.962  8.096   2.780  0.999  C26  3GM 26 
3GM N27  N27  N 0 1 N N N 8.263  -46.560 2.090  4.075   -0.018 0.204  N27  3GM 27 
3GM N28  N28  N 0 1 N N N 10.391 -49.216 5.766  9.482   2.948  0.543  N28  3GM 28 
3GM O29  O29  O 0 1 N N N 14.059 -44.997 2.242  0.385   1.602  -2.096 O29  3GM 29 
3GM O30  O30  O 0 1 N N N 17.146 -45.503 -5.243 -9.365  -0.636 0.416  O30  3GM 30 
3GM O31  O31  O 0 1 N N N 12.675 -46.727 2.026  0.701   2.961  -0.370 O31  3GM 31 
3GM O32  O32  O 0 1 N N N 9.276  -48.049 0.655  5.989   -0.289 -0.885 O32  3GM 32 
3GM O33  O33  O 0 1 N N N 17.834 -43.367 -5.820 -8.815  1.503  0.496  O33  3GM 33 
3GM O34  O34  O 0 1 N N N 15.227 -45.550 -0.307 -2.629  2.014  -0.896 O34  3GM 34 
3GM O35  O35  O 0 1 N N N 14.669 -44.791 -2.971 -4.175  0.297  0.655  O35  3GM 35 
3GM H1   H1   H 0 1 N N N 7.990  -39.751 1.218  0.677   -6.157 -0.049 H1   3GM 36 
3GM H2   H2   H 0 1 N N N 9.454  -40.282 -0.675 -1.112  -4.641 -0.806 H2   3GM 37 
3GM H3   H3   H 0 1 N N N 7.102  -41.566 2.634  2.916   -5.266 0.442  H3   3GM 38 
3GM H4   H4   H 0 1 N N N 10.048 -42.613 -1.176 -0.659  -2.237 -1.059 H4   3GM 39 
3GM H5   H5   H 0 1 N N N 10.379 -44.382 -1.812 -0.352  -1.651 2.039  H5   3GM 40 
3GM H6   H6   H 0 1 N N N 12.214 -44.281 -3.436 -2.803  -1.447 2.014  H6   3GM 41 
3GM H161 H161 H 0 0 N N N 8.206  -44.392 3.193  3.806   -2.286 1.273  H161 3GM 42 
3GM H162 H162 H 0 0 N N N 6.580  -44.267 2.440  4.517   -2.990 -0.211 H162 3GM 43 
3GM H18  H18  H 0 1 N N N 9.002  -45.217 -0.676 1.575   -0.499 -1.446 H18  3GM 44 
3GM H211 H211 H 0 0 N N N 10.591 -46.068 1.302  1.909   0.814  0.665  H211 3GM 45 
3GM H212 H212 H 0 0 N N N 10.754 -44.306 1.609  1.763   -0.692 1.602  H212 3GM 46 
3GM H31  H31  H 0 1 N N N 12.958 -46.895 2.917  1.173   3.567  -0.959 H31  3GM 47 
3GM H221 H221 H 0 0 N N N 10.986 -47.994 2.734  5.443   2.374  0.524  H221 3GM 48 
3GM H222 H222 H 0 0 N N N 9.750  -47.218 3.781  5.991   1.230  1.773  H222 3GM 49 
3GM H27  H27  H 0 1 N N N 7.756  -46.640 2.948  3.568   0.469  0.873  H27  3GM 50 
3GM H231 H231 H 0 0 N N N 18.398 -44.929 -3.113 -6.615  -0.606 0.742  H231 3GM 51 
3GM H232 H232 H 0 0 N N N 18.748 -43.228 -3.573 -6.987  -0.446 -0.991 H232 3GM 52 
3GM H30  H30  H 0 1 N N N 16.926 -45.605 -6.161 -10.274 -0.389 0.634  H30  3GM 53 
3GM H19  H19  H 0 1 N N N 7.144  -45.587 0.645  3.832   -1.174 -1.550 H19  3GM 54 
3GM H171 H171 H 0 0 N N N 17.127 -44.807 -0.612 -4.418  2.923  -1.411 H171 3GM 55 
3GM H172 H172 H 0 0 N N N 15.797 -43.600 -0.663 -4.030  2.925  0.329  H172 3GM 56 
3GM H20  H20  H 0 1 N N N 16.518 -45.718 -2.726 -4.729  0.454  -1.336 H20  3GM 57 
3GM H241 H241 H 0 0 N N N 16.050 -43.243 -3.909 -6.278  1.846  0.896  H241 3GM 58 
3GM H242 H242 H 0 0 N N N 16.822 -42.823 -2.342 -6.650  2.006  -0.837 H242 3GM 59 
3GM H251 H251 H 0 0 N N N 8.594  -49.646 2.922  7.999   0.709  0.414  H251 3GM 60 
3GM H252 H252 H 0 0 N N N 10.300 -50.042 3.323  7.450   1.853  -0.835 H252 3GM 61 
3GM H261 H261 H 0 0 N N N 8.536  -48.384 5.168  7.540   3.700  0.817  H261 3GM 62 
3GM H262 H262 H 0 0 N N N 8.579  -50.179 5.235  8.089   2.557  2.065  H262 3GM 63 
3GM H281 H281 H 0 0 N N N 10.159 -49.185 6.738  9.936   3.703  1.035  H281 3GM 64 
3GM H282 H282 H 0 0 N N N 10.946 -50.027 5.581  10.002  2.089  0.641  H282 3GM 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3GM C1  C2   SING Y N 1  
3GM C1  C3   DOUB Y N 2  
3GM C2  C4   DOUB Y N 3  
3GM C3  C8   SING Y N 4  
3GM C4  C9   SING Y N 5  
3GM C5  C6   SING Y N 6  
3GM C5  C10  DOUB Y N 7  
3GM C6  C11  DOUB Y N 8  
3GM C7  C10  SING Y N 9  
3GM C7  C12  DOUB Y N 10 
3GM C7  C13  SING N N 11 
3GM C8  C9   DOUB Y N 12 
3GM C8  C16  SING N N 13 
3GM C9  C18  SING N N 14 
3GM C10 C21  SING N N 15 
3GM C11 C12  SING Y N 16 
3GM C11 O35  SING N N 17 
3GM C12 O34  SING N N 18 
3GM C13 O29  DOUB N N 19 
3GM C13 O31  SING N N 20 
3GM C14 C22  SING N N 21 
3GM C14 N27  SING N N 22 
3GM C14 O32  DOUB N N 23 
3GM C15 C23  SING N N 24 
3GM C15 O30  SING N N 25 
3GM C15 O33  DOUB N N 26 
3GM C16 C19  SING N N 27 
3GM C17 C20  SING N N 28 
3GM C17 O34  SING N N 29 
3GM C18 C19  SING N N 30 
3GM C18 C21  SING N N 31 
3GM C19 N27  SING N N 32 
3GM C20 C24  SING N N 33 
3GM C20 O35  SING N N 34 
3GM C22 C25  SING N N 35 
3GM C23 C24  SING N N 36 
3GM C25 C26  SING N N 37 
3GM C26 N28  SING N N 38 
3GM C1  H1   SING N N 39 
3GM C2  H2   SING N N 40 
3GM C3  H3   SING N N 41 
3GM C4  H4   SING N N 42 
3GM C5  H5   SING N N 43 
3GM C6  H6   SING N N 44 
3GM C16 H161 SING N N 45 
3GM C16 H162 SING N N 46 
3GM C18 H18  SING N N 47 
3GM C21 H211 SING N N 48 
3GM C21 H212 SING N N 49 
3GM O31 H31  SING N N 50 
3GM C22 H221 SING N N 51 
3GM C22 H222 SING N N 52 
3GM N27 H27  SING N N 53 
3GM C23 H231 SING N N 54 
3GM C23 H232 SING N N 55 
3GM O30 H30  SING N N 56 
3GM C19 H19  SING N N 57 
3GM C17 H171 SING N N 58 
3GM C17 H172 SING N N 59 
3GM C20 H20  SING N N 60 
3GM C24 H241 SING N N 61 
3GM C24 H242 SING N N 62 
3GM C25 H251 SING N N 63 
3GM C25 H252 SING N N 64 
3GM C26 H261 SING N N 65 
3GM C26 H262 SING N N 66 
3GM N28 H281 SING N N 67 
3GM N28 H282 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3GM SMILES           ACDLabs              12.01 "O=C(O)c2c(ccc1OC(COc12)CCC(=O)O)CC4c3ccccc3CC4NC(=O)CCCN" 
3GM InChI            InChI                1.03  
"InChI=1S/C26H30N2O7/c27-11-3-6-22(29)28-20-13-15-4-1-2-5-18(15)19(20)12-16-7-9-21-25(24(16)26(32)33)34-14-17(35-21)8-10-23(30)31/h1-2,4-5,7,9,17,19-20H,3,6,8,10-14,27H2,(H,28,29)(H,30,31)(H,32,33)/t17-,19+,20-/m0/s1" 
3GM InChIKey         InChI                1.03  UEGSVADLZPXOAG-SXLOBPIMSA-N 
3GM SMILES_CANONICAL CACTVS               3.385 "NCCCC(=O)N[C@H]1Cc2ccccc2[C@H]1Cc3ccc4O[C@@H](CCC(O)=O)COc4c3C(O)=O" 
3GM SMILES           CACTVS               3.385 "NCCCC(=O)N[CH]1Cc2ccccc2[CH]1Cc3ccc4O[CH](CCC(O)=O)COc4c3C(O)=O" 
3GM SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc2c(c1)C[C@@H]([C@@H]2Cc3ccc4c(c3C(=O)O)OC[C@@H](O4)CCC(=O)O)NC(=O)CCCN" 
3GM SMILES           "OpenEye OEToolkits" 1.9.2 "c1ccc2c(c1)CC(C2Cc3ccc4c(c3C(=O)O)OCC(O4)CCC(=O)O)NC(=O)CCCN" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3GM "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-6-({(1R,2S)-2-[(4-aminobutanoyl)amino]-2,3-dihydro-1H-inden-1-yl}methyl)-2-(2-carboxyethyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid"       
3GM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-6-[[(1R,2S)-2-(4-azanylbutanoylamino)-2,3-dihydro-1H-inden-1-yl]methyl]-2-(3-hydroxy-3-oxopropyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3GM "Create component"  2013-11-13 EBI  
3GM "Initial release"   2013-11-20 RCSB 
3GM "Modify descriptor" 2014-09-05 RCSB 
# 
