data_Y9L
# 
_chem_comp.id                                    Y9L 
_chem_comp.name                                  "[4-(trifluoromethoxy)phenyl]methyl (3aR,6aS)-5-(2-oxo-1,2-dihydro[1,3]oxazolo[5,4-b]pyridine-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrole-2(1H)-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H19 F3 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-12 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        492.405 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y9L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G6K 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y9L C11 C1  C 0 1 N N N N N N -14.616 8.321  48.288 -1.286  1.902  0.018  C11 Y9L 1  
Y9L O12 O1  O 0 1 N N N N N N -13.814 7.482  47.449 -2.510  1.356  0.153  O12 Y9L 2  
Y9L C15 C2  C 0 1 Y N N N N N -13.383 5.656  45.877 -4.916  1.483  0.337  C15 Y9L 3  
Y9L C16 C3  C 0 1 Y N N N N N -13.045 4.299  46.156 -5.405  1.204  1.600  C16 Y9L 4  
Y9L C17 C4  C 0 1 Y N N N N N -12.098 3.616  45.372 -6.578  0.489  1.744  C17 Y9L 5  
Y9L C18 C5  C 0 1 Y N N N N N -11.485 4.315  44.298 -7.265  0.051  0.622  C18 Y9L 6  
Y9L C19 C6  C 0 1 Y N N N N N -11.811 5.655  43.991 -6.772  0.333  -0.644 C19 Y9L 7  
Y9L C20 C7  C 0 1 Y N N N N N -12.762 6.323  44.792 -5.599  1.048  -0.784 C20 Y9L 8  
Y9L C22 C8  C 0 1 N N N N N N -10.612 2.315  43.073 -9.073  -1.071 -0.438 C22 Y9L 9  
Y9L C26 C9  C 0 1 N N N N N N -10.927 12.863 52.481 4.509   -2.234 0.250  C26 Y9L 10 
Y9L C27 C10 C 0 1 Y N N N N N -9.596  12.453 53.071 5.853   -1.634 0.102  C27 Y9L 11 
Y9L C1  C11 C 0 1 N N N N N N -11.062 10.919 50.843 2.000   -1.900 0.433  C1  Y9L 12 
Y9L N2  N1  N 0 1 N N N N N N -11.641 12.140 51.515 3.419   -1.442 0.288  N2  Y9L 13 
Y9L C3  C12 C 0 1 N N N N N N -13.062 12.349 51.056 3.410   0.048  0.194  C3  Y9L 14 
Y9L C4  C13 C 0 1 N N S N N N -12.138 10.662 49.773 1.235   -0.772 -0.210 C4  Y9L 15 
Y9L C5  C14 C 0 1 N N S N N N -13.394 10.900 50.636 1.988   0.440  0.475  C5  Y9L 16 
Y9L C6  C15 C 0 1 N N N N N N -14.550 10.416 49.742 1.223   1.568  -0.167 C6  Y9L 17 
Y9L N7  N2  N 0 1 N N N N N N -13.890 9.425  48.822 -0.196  1.110  -0.022 N7  Y9L 18 
Y9L C8  C16 C 0 1 N N N N N N -12.425 9.325  49.108 -0.186  -0.380 0.072  C8  Y9L 19 
Y9L O13 O2  O 0 1 N N N N N N -15.824 8.074  48.522 -1.165  3.108  -0.073 O13 Y9L 20 
Y9L C14 C17 C 0 1 N N N N N N -14.441 6.374  46.736 -3.639  2.269  0.182  C14 Y9L 21 
Y9L O21 O3  O 0 1 N N N N N N -10.484 3.638  43.581 -8.419  -0.653 0.761  O21 Y9L 22 
Y9L F23 F1  F 0 1 N N N N N N -9.756  1.507  43.702 -8.216  -1.897 -1.173 F23 Y9L 23 
Y9L F24 F2  F 0 1 N N N N N N -11.828 1.846  43.335 -10.236 -1.777 -0.113 F24 Y9L 24 
Y9L F25 F3  F 0 1 N N N N N N -10.405 2.207  41.740 -9.408  0.052  -1.203 F25 Y9L 25 
Y9L O28 O4  O 0 1 N N N N N N -11.391 13.952 52.865 4.388   -3.440 0.337  O28 Y9L 26 
Y9L C29 C18 C 0 1 Y N N N N N -9.506  11.160 53.631 6.974   -2.463 0.063  C29 Y9L 27 
Y9L C30 C19 C 0 1 Y N N N N N -8.334  10.735 54.288 8.229   -1.894 -0.076 C30 Y9L 28 
Y9L N31 N3  N 0 1 Y N N N N N -8.572  13.380 53.109 5.974   -0.315 0.002  N31 Y9L 29 
Y9L C32 C20 C 0 1 Y N N N N N -7.474  12.938 53.772 7.152   0.263  -0.132 C32 Y9L 30 
Y9L C33 C21 C 0 1 Y N N N N N -7.301  11.634 54.368 8.319   -0.512 -0.172 C33 Y9L 31 
Y9L N34 N4  N 0 1 N N N N N N -6.047  11.627 54.966 9.381   0.371  -0.315 N34 Y9L 32 
Y9L C35 C22 C 0 1 N N N N N N -5.490  12.913 54.750 8.870   1.617  -0.353 C35 Y9L 33 
Y9L O36 O5  O 0 1 N N N N N N -6.359  13.720 54.013 7.532   1.558  -0.250 O36 Y9L 34 
Y9L O37 O6  O 0 1 N N N N N N -4.454  13.357 55.127 9.519   2.638  -0.470 O37 Y9L 35 
Y9L H48 H1  H 0 1 N N N N N N -13.522 3.789  46.980 -4.869  1.544  2.474  H48 Y9L 36 
Y9L H49 H2  H 0 1 N N N N N N -11.844 2.587  45.581 -6.959  0.270  2.731  H49 Y9L 37 
Y9L H50 H3  H 0 1 N N N N N N -11.341 6.159  43.159 -7.305  -0.007 -1.520 H50 Y9L 38 
Y9L H51 H4  H 0 1 N N N N N N -13.018 7.350  44.576 -5.214  1.268  -1.769 H51 Y9L 39 
Y9L H38 H5  H 0 1 N N N N N N -10.972 10.074 51.541 1.837   -2.835 -0.103 H38 Y9L 40 
Y9L H39 H6  H 0 1 N N N N N N -10.081 11.129 50.392 1.731   -2.002 1.484  H39 Y9L 41 
Y9L H40 H7  H 0 1 N N N N N N -13.711 12.702 51.871 4.077   0.480  0.940  H40 Y9L 42 
Y9L H41 H8  H 0 1 N N N N N N -13.124 13.049 50.209 3.701   0.367  -0.807 H41 Y9L 43 
Y9L H10 H9  H 0 1 N N N N N N -12.076 11.446 49.004 1.414   -0.763 -1.285 H10 Y9L 44 
Y9L H9  H10 H 0 1 N N N N N N -13.340 10.254 51.525 1.804   0.435  1.549  H9  Y9L 45 
Y9L H42 H11 H 0 1 N N N N N N -15.336 9.933  50.342 1.386   2.503  0.370  H42 Y9L 46 
Y9L H43 H12 H 0 1 N N N N N N -14.984 11.252 49.174 1.492   1.671  -1.218 H43 Y9L 47 
Y9L H45 H13 H 0 1 N N N N N N -11.844 9.207  48.181 -0.854  -0.811 -0.674 H45 Y9L 48 
Y9L H44 H14 H 0 1 N N N N N N -12.207 8.487  49.786 -0.477  -0.699 1.072  H44 Y9L 49 
Y9L H46 H15 H 0 1 N N N N N N -14.868 5.665  47.461 -3.530  2.955  1.022  H46 Y9L 50 
Y9L H47 H16 H 0 1 N N N N N N -15.240 6.761  46.087 -3.672  2.836  -0.748 H47 Y9L 51 
Y9L H52 H17 H 0 1 N N N N N N -10.347 10.487 53.555 6.865   -3.534 0.141  H52 Y9L 52 
Y9L H53 H18 H 0 1 N N N N N N -8.253  9.744  54.710 9.116   -2.510 -0.109 H53 Y9L 53 
Y9L H54 H19 H 0 1 N N N N N N -5.621  10.865 55.453 10.320  0.134  -0.376 H54 Y9L 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y9L C1  C4  SING N N 1  
Y9L C1  N2  SING N N 2  
Y9L N2  C3  SING N N 3  
Y9L N2  C26 SING N N 4  
Y9L C3  C5  SING N N 5  
Y9L C4  C5  SING N N 6  
Y9L C4  C8  SING N N 7  
Y9L C5  C6  SING N N 8  
Y9L C6  N7  SING N N 9  
Y9L N7  C8  SING N N 10 
Y9L N7  C11 SING N N 11 
Y9L C11 O12 SING N N 12 
Y9L C11 O13 DOUB N N 13 
Y9L O12 C14 SING N N 14 
Y9L C14 C15 SING N N 15 
Y9L C15 C16 DOUB Y N 16 
Y9L C15 C20 SING Y N 17 
Y9L C16 C17 SING Y N 18 
Y9L C17 C18 DOUB Y N 19 
Y9L C18 C19 SING Y N 20 
Y9L C18 O21 SING N N 21 
Y9L C19 C20 DOUB Y N 22 
Y9L O21 C22 SING N N 23 
Y9L C22 F23 SING N N 24 
Y9L C22 F24 SING N N 25 
Y9L C22 F25 SING N N 26 
Y9L C26 C27 SING N N 27 
Y9L C26 O28 DOUB N N 28 
Y9L C27 C29 DOUB Y N 29 
Y9L C27 N31 SING Y N 30 
Y9L C29 C30 SING Y N 31 
Y9L C30 C33 DOUB Y N 32 
Y9L N31 C32 DOUB Y N 33 
Y9L C32 C33 SING Y N 34 
Y9L C32 O36 SING N N 35 
Y9L C33 N34 SING N N 36 
Y9L N34 C35 SING N N 37 
Y9L C35 O36 SING N N 38 
Y9L C35 O37 DOUB N N 39 
Y9L C16 H48 SING N N 40 
Y9L C17 H49 SING N N 41 
Y9L C19 H50 SING N N 42 
Y9L C20 H51 SING N N 43 
Y9L C1  H38 SING N N 44 
Y9L C1  H39 SING N N 45 
Y9L C3  H40 SING N N 46 
Y9L C3  H41 SING N N 47 
Y9L C4  H10 SING N N 48 
Y9L C5  H9  SING N N 49 
Y9L C6  H42 SING N N 50 
Y9L C6  H43 SING N N 51 
Y9L C8  H45 SING N N 52 
Y9L C8  H44 SING N N 53 
Y9L C14 H46 SING N N 54 
Y9L C14 H47 SING N N 55 
Y9L C29 H52 SING N N 56 
Y9L C30 H53 SING N N 57 
Y9L N34 H54 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y9L SMILES           ACDLabs              12.01 "FC(F)(F)Oc1ccc(cc1)COC(=O)N1CC2CN(CC2C1)C(=O)c1ccc2NC(=O)Oc2n1"                                                                                                     
Y9L InChI            InChI                1.06  "InChI=1S/C22H19F3N4O6/c23-22(24,25)35-15-3-1-12(2-4-15)11-33-21(32)29-9-13-7-28(8-14(13)10-29)19(30)17-6-5-16-18(26-17)34-20(31)27-16/h1-6,13-14H,7-11H2,(H,27,31)" 
Y9L InChIKey         InChI                1.06  ORSKKMZURUDUEB-UHFFFAOYSA-N                                                                                                                                          
Y9L SMILES_CANONICAL CACTVS               3.385 "FC(F)(F)Oc1ccc(COC(=O)N2C[C@@H]3CN(C[C@H]3C2)C(=O)c4ccc5NC(=O)Oc5n4)cc1"                                                                                            
Y9L SMILES           CACTVS               3.385 "FC(F)(F)Oc1ccc(COC(=O)N2C[CH]3CN(C[CH]3C2)C(=O)c4ccc5NC(=O)Oc5n4)cc1"                                                                                               
Y9L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1COC(=O)N2C[C@@H]3CN(C[C@H]3C2)C(=O)c4ccc5c(n4)OC(=O)N5)OC(F)(F)F"                                                                                          
Y9L SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1COC(=O)N2CC3CN(CC3C2)C(=O)c4ccc5c(n4)OC(=O)N5)OC(F)(F)F"                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y9L "SYSTEMATIC NAME" ACDLabs              12.01 "[4-(trifluoromethoxy)phenyl]methyl (3aR,6aS)-5-(2-oxo-1,2-dihydro[1,3]oxazolo[5,4-b]pyridine-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrole-2(1H)-carboxylate"                                        
Y9L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[4-(trifluoromethyloxy)phenyl]methyl (3~{a}~{S},6~{a}~{S})-2-[(2-oxidanylidene-1~{H}-[1,3]oxazolo[5,4-b]pyridin-5-yl)carbonyl]-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrole-5-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y9L "Create component" 2023-06-12 RCSB 
Y9L "Initial release"  2024-12-18 RCSB 
# 
