data_Y5L
#

_chem_comp.id                                   Y5L
_chem_comp.name                                 "4-(2-chloro-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl)-7-methoxy-3,4-dihydroquinoxalin-2(1H)-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H15 Cl N4 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-05-20
_chem_comp.pdbx_modified_date                   2021-09-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       330.769
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y5L
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6X1E
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y5L  C02   C1   C   0  1  Y  N  N  16.280  -66.927  -38.882   1.980  -2.039   0.336  C02   Y5L   1  
Y5L  C04   C2   C   0  1  Y  N  N  14.464  -66.864  -40.303   3.487  -0.352  -0.095  C04   Y5L   2  
Y5L  C05   C3   C   0  1  Y  N  N  15.291  -66.703  -41.410   2.441   0.537  -0.232  C05   Y5L   3  
Y5L  C06   C4   C   0  1  N  N  N  14.415  -66.613  -42.681   2.973   1.915  -0.548  C06   Y5L   4  
Y5L  C07   C5   C   0  1  N  N  N  12.989  -66.398  -42.218   4.429   1.688  -1.011  C07   Y5L   5  
Y5L  C08   C6   C   0  1  N  N  N  12.994  -66.888  -40.782   4.800   0.367  -0.311  C08   Y5L   6  
Y5L  C09   C7   C   0  1  Y  N  N  16.680  -66.653  -41.154   1.138   0.063  -0.073  C09   Y5L   7  
Y5L  C11   C8   C   0  1  Y  N  N  17.478  -65.658  -43.366  -1.261   0.431  -0.197  C11   Y5L   8  
Y5L  C12   C9   C   0  1  Y  N  N  16.783  -64.417  -43.311  -1.551  -0.841  -0.658  C12   Y5L   9  
Y5L  C13   C10  C   0  1  Y  N  N  16.639  -63.650  -44.468  -2.858  -1.294  -0.647  C13   Y5L  10  
Y5L  C14   C11  C   0  1  Y  N  N  17.183  -64.101  -45.683  -3.875  -0.476  -0.176  C14   Y5L  11  
Y5L  C16   C12  C   0  1  N  N  N  16.710  -62.022  -46.635  -5.385  -2.249  -0.662  C16   Y5L  12  
Y5L  C17   C13  C   0  1  Y  N  N  17.861  -65.314  -45.724  -3.588   0.799   0.288  C17   Y5L  13  
Y5L  C18   C14  C   0  1  Y  N  N  18.008  -66.096  -44.557  -2.281   1.257   0.280  C18   Y5L  14  
Y5L  C20   C15  C   0  1  N  N  N  19.210  -68.019  -43.413  -0.769   3.091   0.496  C20   Y5L  15  
Y5L  C21   C16  C   0  1  N  N  N  18.871  -67.238  -42.115   0.250   2.370  -0.348  C21   Y5L  16  
Y5L  N03   N1   N   0  1  Y  N  N  14.971  -66.972  -39.062   3.222  -1.621   0.187  N03   Y5L  17  
Y5L  N10   N2   N   0  1  N  N  N  17.661  -66.507  -42.203   0.056   0.920  -0.202  N10   Y5L  18  
Y5L  N19   N3   N   0  1  N  N  N  18.738  -67.388  -44.628  -1.968   2.536   0.753  N19   Y5L  19  
Y5L  N23   N4   N   0  1  Y  N  N  17.116  -66.774  -39.903   0.951  -1.224   0.208  N23   Y5L  20  
Y5L  O15   O1   O   0  1  N  N  N  17.058  -63.353  -46.862  -5.159  -0.926  -0.170  O15   Y5L  21  
Y5L  O22   O2   O   0  1  N  N  N  19.797  -69.045  -43.407  -0.504   4.183   0.952  O22   Y5L  22  
Y5L  CL01  CL1  CL  0  0  N  N  N  16.950  -67.072  -37.240   1.691  -3.711   0.704  CL01  Y5L  23  
Y5L  H1    H1   H   0  1  N  N  N  14.489  -67.547  -43.258   2.390   2.377  -1.345  H1    Y5L  24  
Y5L  H2    H2   H   0  1  N  N  N  14.741  -65.769  -43.306   2.953   2.537   0.347  H2    Y5L  25  
Y5L  H3    H3   H   0  1  N  N  N  12.718  -65.333  -42.267   4.478   1.572  -2.094  H3    Y5L  26  
Y5L  H4    H4   H   0  1  N  N  N  12.287  -66.984  -42.829   5.072   2.502  -0.678  H4    Y5L  27  
Y5L  H5    H5   H   0  1  N  N  N  12.381  -66.225  -40.154   5.276   0.568   0.649  H5    Y5L  28  
Y5L  H6    H6   H   0  1  N  N  N  12.596  -67.912  -40.731   5.461  -0.225  -0.945  H6    Y5L  29  
Y5L  H7    H7   H   0  1  N  N  N  16.368  -64.070  -42.376  -0.760  -1.477  -1.026  H7    Y5L  30  
Y5L  H8    H8   H   0  1  N  N  N  16.109  -62.710  -44.430  -3.088  -2.287  -1.005  H8    Y5L  31  
Y5L  H9    H9   H   0  1  N  N  N  16.629  -61.494  -47.597  -5.057  -2.311  -1.700  H9    Y5L  32  
Y5L  H10   H10  H   0  1  N  N  N  15.744  -61.980  -46.111  -4.821  -2.962  -0.060  H10   Y5L  33  
Y5L  H11   H11  H   0  1  N  N  N  17.483  -61.541  -46.017  -6.448  -2.482  -0.602  H11   Y5L  34  
Y5L  H12   H12  H   0  1  N  N  N  18.279  -65.662  -46.657  -4.382   1.434   0.654  H12   Y5L  35  
Y5L  H13   H13  H   0  1  N  N  N  18.786  -67.957  -41.287   0.123   2.651  -1.393  H13   Y5L  36  
Y5L  H14   H14  H   0  1  N  N  N  19.690  -66.534  -41.907   1.253   2.639  -0.017  H14   Y5L  37  
Y5L  H15   H15  H   0  1  N  N  N  18.903  -67.821  -45.514  -2.623   3.028   1.273  H15   Y5L  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y5L  O15  C16   SING  N  N   1  
Y5L  O15  C14   SING  N  N   2  
Y5L  C17  C14   DOUB  Y  N   3  
Y5L  C17  C18   SING  Y  N   4  
Y5L  C14  C13   SING  Y  N   5  
Y5L  N19  C18   SING  N  N   6  
Y5L  N19  C20   SING  N  N   7  
Y5L  C18  C11   DOUB  Y  N   8  
Y5L  C13  C12   DOUB  Y  N   9  
Y5L  C20  O22   DOUB  N  N  10  
Y5L  C20  C21   SING  N  N  11  
Y5L  C11  C12   SING  Y  N  12  
Y5L  C11  N10   SING  N  N  13  
Y5L  C06  C07   SING  N  N  14  
Y5L  C06  C05   SING  N  N  15  
Y5L  C07  C08   SING  N  N  16  
Y5L  N10  C21   SING  N  N  17  
Y5L  N10  C09   SING  N  N  18  
Y5L  C05  C09   DOUB  Y  N  19  
Y5L  C05  C04   SING  Y  N  20  
Y5L  C09  N23   SING  Y  N  21  
Y5L  C08  C04   SING  N  N  22  
Y5L  C04  N03   DOUB  Y  N  23  
Y5L  N23  C02   DOUB  Y  N  24  
Y5L  N03  C02   SING  Y  N  25  
Y5L  C02  CL01  SING  N  N  26  
Y5L  C06  H1    SING  N  N  27  
Y5L  C06  H2    SING  N  N  28  
Y5L  C07  H3    SING  N  N  29  
Y5L  C07  H4    SING  N  N  30  
Y5L  C08  H5    SING  N  N  31  
Y5L  C08  H6    SING  N  N  32  
Y5L  C12  H7    SING  N  N  33  
Y5L  C13  H8    SING  N  N  34  
Y5L  C16  H9    SING  N  N  35  
Y5L  C16  H10   SING  N  N  36  
Y5L  C16  H11   SING  N  N  37  
Y5L  C17  H12   SING  N  N  38  
Y5L  C21  H13   SING  N  N  39  
Y5L  C21  H14   SING  N  N  40  
Y5L  N19  H15   SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y5L  SMILES            ACDLabs               12.01  "c1(Cl)nc4c(c(n1)N3c2ccc(cc2NC(=O)C3)OC)CCC4"  
Y5L  InChI             InChI                 1.03   "InChI=1S/C16H15ClN4O2/c1-23-9-5-6-13-12(7-9)18-14(22)8-21(13)15-10-3-2-4-11(10)19-16(17)20-15/h5-7H,2-4,8H2,1H3,(H,18,22)"  
Y5L  InChIKey          InChI                 1.03   JFFNCFQJSOVJEN-UHFFFAOYSA-N  
Y5L  SMILES_CANONICAL  CACTVS                3.385  "COc1ccc2N(CC(=O)Nc2c1)c3nc(Cl)nc4CCCc34"  
Y5L  SMILES            CACTVS                3.385  "COc1ccc2N(CC(=O)Nc2c1)c3nc(Cl)nc4CCCc34"  
Y5L  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1ccc2c(c1)NC(=O)CN2c3c4c(nc(n3)Cl)CCC4"  
Y5L  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1ccc2c(c1)NC(=O)CN2c3c4c(nc(n3)Cl)CCC4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y5L  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-(2-chloro-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl)-7-methoxy-3,4-dihydroquinoxalin-2(1H)-one"  
Y5L  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "4-(2-chloranyl-6,7-dihydro-5~{H}-cyclopenta[d]pyrimidin-4-yl)-7-methoxy-1,3-dihydroquinoxalin-2-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y5L  "Create component"  2020-05-20  RCSB  
Y5L  "Initial release"   2021-09-22  RCSB  
##
