data_W1L
# 
_chem_comp.id                                    W1L 
_chem_comp.name                                  "(1R,2S,5S)-N~3~,N~3~-bis(4-chlorophenyl)-N~2~-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2,3-dicarboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H32 Cl2 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-21 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        559.484 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     W1L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8U9T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
W1L C1   C1  C  0 1 Y N N N N N -8.970  -18.113 -19.377 2.614  0.808  -0.225 C1   W1L 1  
W1L C10  C2  C  0 1 Y N N N N N -12.684 -19.960 -18.580 3.890  -3.461 1.086  C10  W1L 2  
W1L C11  C3  C  0 1 Y N N N N N -13.762 -19.298 -19.150 4.404  -3.878 -0.129 C11  W1L 3  
W1L C12  C4  C  0 1 N N N N N N -9.976  -16.250 -18.173 0.754  -0.533 0.414  C12  W1L 4  
W1L C13  C5  C  0 1 N N N N N N -8.313  -15.096 -19.714 0.344  1.937  -0.025 C13  W1L 5  
W1L C14  C6  C  0 1 N N S N N N -9.267  -13.962 -17.781 -1.451 0.674  0.787  C14  W1L 6  
W1L C15  C7  C  0 1 N N N N N N -10.680 -13.443 -17.910 -2.337 0.676  -0.432 C15  W1L 7  
W1L C16  C8  C  0 1 N N S N N N -7.808  -13.662 -19.738 -0.366 2.860  0.989  C16  W1L 8  
W1L C17  C9  C  0 1 N N S N N N -12.632 -12.420 -16.877 -4.516 0.426  -1.493 C17  W1L 9  
W1L C18  C10 C  0 1 N N N N N N -6.855  -13.330 -18.588 -0.403 2.426  2.456  C18  W1L 10 
W1L C19  C11 C  0 1 N N N N N N -13.478 -13.169 -15.835 -5.743 -0.449 -1.233 C19  W1L 11 
W1L C2   C12 C  0 1 Y N N N N N -7.790  -18.327 -18.660 3.248  1.537  0.773  C2   W1L 12 
W1L C20  C13 C  0 1 N N S N N N -13.670 -14.606 -16.317 -5.304 -1.903 -1.053 C20  W1L 13 
W1L C21  C14 C  0 1 N N N N N N -14.662 -14.692 -17.469 -6.530 -2.815 -0.819 C21  W1L 14 
W1L C22  C15 C  0 1 N N N N N N -15.509 -15.935 -17.186 -6.598 -2.862 0.723  C22  W1L 15 
W1L C23  C16 C  0 1 N N N N N N -5.858  -12.253 -19.033 -0.687 3.504  3.504  C23  W1L 16 
W1L C24  C17 C  0 1 N N N N N N -14.286 -15.491 -15.270 -4.482 -2.056 0.208  C24  W1L 17 
W1L C25  C18 C  0 1 N N N N N N -6.255  -14.552 -17.889 0.568  1.325  2.891  C25  W1L 18 
W1L C26  C19 C  0 1 Y N N N N N -13.616 -17.998 -19.627 4.139  -3.156 -1.279 C26  W1L 19 
W1L C27  C20 C  0 1 Y N N N N N -12.386 -17.355 -19.528 3.360  -2.017 -1.217 C27  W1L 20 
W1L C3   C21 C  0 1 Y N N N N N -6.767  -19.055 -19.282 3.800  2.769  0.481  C3   W1L 21 
W1L C34  C22 C  0 1 N N R N N N -8.339  -12.968 -18.489 -1.549 2.027  1.525  C34  W1L 22 
W1L C4   C23 C  0 1 Y N N N N N -6.949  -19.564 -20.567 3.723  3.276  -0.804 C4   W1L 23 
W1L C5   C24 C  0 1 Y N N N N N -8.130  -19.346 -21.254 3.092  2.552  -1.800 C5   W1L 24 
W1L C6   C25 C  0 1 Y N N N N N -9.137  -18.621 -20.658 2.543  1.317  -1.515 C6   W1L 25 
W1L C7   C26 C  0 1 Y N N N N N -11.304 -18.024 -18.959 2.843  -1.597 0.002  C7   W1L 26 
W1L C8   C27 C  0 1 N N N N N N -12.596 -10.924 -16.593 -4.965 1.857  -1.796 C8   W1L 27 
W1L C9   C28 C  0 1 Y N N N N N -11.454 -19.322 -18.484 3.111  -2.323 1.155  C9   W1L 28 
W1L N1   N1  N  0 1 N N N N N N -10.049 -17.405 -18.843 2.053  -0.442 0.068  N1   W1L 29 
W1L N13  N2  N  0 1 N N N N N N -9.208  -15.203 -18.553 -0.027 0.565  0.395  N13  W1L 30 
W1L N16  N3  N  0 1 N N N N N N -11.266 -12.922 -16.835 -3.655 0.426  -0.308 N16  W1L 31 
W1L N23  N4  N  0 1 N N N N N N -15.274 -16.227 -15.785 -5.229 -2.600 1.184  N23  W1L 32 
W1L O26  O1  O  0 1 N N N N N N -13.908 -15.537 -14.115 -3.318 -1.735 0.322  O26  W1L 33 
W1L O33  O2  O  0 1 N N N N N N -10.691 -16.163 -17.187 0.286  -1.606 0.743  O33  W1L 34 
W1L O38  O3  O  0 1 N N N N N N -11.244 -13.532 -18.997 -1.863 0.901  -1.525 O38  W1L 35 
W1L O9   O4  O  0 1 N N N N N N -13.878 -10.293 -16.707 -5.789 2.334  -0.730 O9   W1L 36 
W1L CL28 CL1 CL 0 0 N N N N N N -5.679  -20.514 -21.420 4.417  4.826  -1.167 CL28 W1L 37 
W1L CL29 CL2 CL 0 0 N N N N N N -15.352 -20.132 -19.261 5.384  -5.309 -0.211 CL29 W1L 38 
W1L H1   H1  H  0 1 N N N N N N -12.801 -20.969 -18.212 4.095  -4.029 1.982  H1   W1L 39 
W1L H2   H2  H  0 1 N N N N N N -8.863  -15.321 -20.640 -0.015 2.136  -1.035 H2   W1L 40 
W1L H3   H3  H  0 1 N N N N N N -7.470  -15.794 -19.609 1.424  2.071  0.027  H3   W1L 41 
W1L H4   H4  H  0 1 N N N N N N -8.978  -14.104 -16.729 -1.725 -0.143 1.454  H4   W1L 42 
W1L H5   H5  H  0 1 N N N N N N -7.738  -13.114 -20.689 -0.446 3.918  0.740  H5   W1L 43 
W1L H6   H6  H  0 1 N N N N N N -13.064 -12.587 -17.875 -3.962 0.032  -2.345 H6   W1L 44 
W1L H7   H7  H  0 1 N N N N N N -12.960 -13.168 -14.865 -6.248 -0.108 -0.329 H7   W1L 45 
W1L H8   H8  H  0 1 N N N N N N -14.457 -12.678 -15.728 -6.426 -0.378 -2.079 H8   W1L 46 
W1L H9   H9  H  0 1 N N N N N N -7.670  -17.943 -17.658 3.308  1.142  1.776  H9   W1L 47 
W1L H10  H10 H  0 1 N N N N N N -12.701 -15.020 -16.633 -4.736 -2.239 -1.921 H10  W1L 48 
W1L H11  H11 H  0 1 N N N N N N -14.131 -14.798 -18.427 -7.433 -2.368 -1.236 H11  W1L 49 
W1L H12  H12 H  0 1 N N N N N N -15.296 -13.793 -17.499 -6.362 -3.809 -1.233 H12  W1L 50 
W1L H13  H13 H  0 1 N N N N N N -16.574 -15.728 -17.366 -7.275 -2.092 1.095  H13  W1L 51 
W1L H14  H14 H  0 1 N N N N N N -15.187 -16.776 -17.817 -6.926 -3.846 1.057  H14  W1L 52 
W1L H15  H15 H  0 1 N N N N N N -5.176  -12.019 -18.203 -0.976 4.429  3.004  H15  W1L 53 
W1L H16  H16 H  0 1 N N N N N N -5.277  -12.623 -19.891 -1.497 3.174  4.154  H16  W1L 54 
W1L H17  H17 H  0 1 N N N N N N -6.406  -11.345 -19.325 0.209  3.678  4.099  H17  W1L 55 
W1L H18  H18 H  0 1 N N N N N N -5.586  -14.221 -17.081 1.321  1.747  3.556  H18  W1L 56 
W1L H19  H19 H  0 1 N N N N N N -7.064  -15.167 -17.467 0.019  0.542  3.414  H19  W1L 57 
W1L H20  H20 H  0 1 N N N N N N -5.684  -15.147 -18.617 1.055  0.903  2.012  H20  W1L 58 
W1L H21  H21 H  0 1 N N N N N N -14.457 -17.489 -20.074 4.541  -3.483 -2.227 H21  W1L 59 
W1L H22  H22 H  0 1 N N N N N N -12.271 -16.344 -19.890 3.154  -1.453 -2.115 H22  W1L 60 
W1L H23  H23 H  0 1 N N N N N N -5.834  -19.222 -18.764 4.293  3.336  1.257  H23  W1L 61 
W1L H24  H24 H  0 1 N N N N N N -8.636  -11.910 -18.548 -2.538 2.463  1.673  H24  W1L 62 
W1L H25  H25 H  0 1 N N N N N N -8.261  -19.742 -22.250 3.037  2.948  -2.803 H25  W1L 63 
W1L H26  H26 H  0 1 N N N N N N -10.061 -18.447 -21.189 2.051  0.752  -2.293 H26  W1L 64 
W1L H27  H27 H  0 1 N N N N N N -12.222 -10.772 -15.570 -4.090 2.500  -1.894 H27  W1L 65 
W1L H28  H28 H  0 1 N N N N N N -11.909 -10.449 -17.309 -5.532 1.871  -2.727 H28  W1L 66 
W1L H29  H29 H  0 1 N N N N N N -10.613 -19.835 -18.040 2.707  -2.001 2.103  H29  W1L 67 
W1L H30  H30 H  0 1 N N N N N N -10.755 -12.874 -15.977 -4.034 0.245  0.567  H30  W1L 68 
W1L H31  H31 H  0 1 N N N N N N -15.794 -16.904 -15.263 -4.906 -2.794 2.077  H31  W1L 69 
W1L H32  H32 H  0 1 N N N N N N -13.793 -9.366  -16.520 -6.111 3.237  -0.855 H32  W1L 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
W1L CL28 C4  SING N N 1  
W1L C5   C6  DOUB Y N 2  
W1L C5   C4  SING Y N 3  
W1L C6   C1  SING Y N 4  
W1L C4   C3  DOUB Y N 5  
W1L C16  C13 SING N N 6  
W1L C16  C18 SING N N 7  
W1L C16  C34 SING N N 8  
W1L C13  N13 SING N N 9  
W1L C26  C27 DOUB Y N 10 
W1L C26  C11 SING Y N 11 
W1L C27  C7  SING Y N 12 
W1L C1   N1  SING N N 13 
W1L C1   C2  DOUB Y N 14 
W1L C3   C2  SING Y N 15 
W1L CL29 C11 SING N N 16 
W1L C11  C10 DOUB Y N 17 
W1L C23  C18 SING N N 18 
W1L O38  C15 DOUB N N 19 
W1L C7   N1  SING N N 20 
W1L C7   C9  DOUB Y N 21 
W1L N1   C12 SING N N 22 
W1L C18  C34 SING N N 23 
W1L C18  C25 SING N N 24 
W1L C10  C9  SING Y N 25 
W1L N13  C12 SING N N 26 
W1L N13  C14 SING N N 27 
W1L C34  C14 SING N N 28 
W1L C12  O33 DOUB N N 29 
W1L C15  C14 SING N N 30 
W1L C15  N16 SING N N 31 
W1L C21  C22 SING N N 32 
W1L C21  C20 SING N N 33 
W1L C22  N23 SING N N 34 
W1L C17  N16 SING N N 35 
W1L C17  C8  SING N N 36 
W1L C17  C19 SING N N 37 
W1L O9   C8  SING N N 38 
W1L C20  C19 SING N N 39 
W1L C20  C24 SING N N 40 
W1L N23  C24 SING N N 41 
W1L C24  O26 DOUB N N 42 
W1L C10  H1  SING N N 43 
W1L C13  H2  SING N N 44 
W1L C13  H3  SING N N 45 
W1L C14  H4  SING N N 46 
W1L C16  H5  SING N N 47 
W1L C17  H6  SING N N 48 
W1L C19  H7  SING N N 49 
W1L C19  H8  SING N N 50 
W1L C2   H9  SING N N 51 
W1L C20  H10 SING N N 52 
W1L C21  H11 SING N N 53 
W1L C21  H12 SING N N 54 
W1L C22  H13 SING N N 55 
W1L C22  H14 SING N N 56 
W1L C23  H15 SING N N 57 
W1L C23  H16 SING N N 58 
W1L C23  H17 SING N N 59 
W1L C25  H18 SING N N 60 
W1L C25  H19 SING N N 61 
W1L C25  H20 SING N N 62 
W1L C26  H21 SING N N 63 
W1L C27  H22 SING N N 64 
W1L C3   H23 SING N N 65 
W1L C34  H24 SING N N 66 
W1L C5   H25 SING N N 67 
W1L C6   H26 SING N N 68 
W1L C8   H27 SING N N 69 
W1L C8   H28 SING N N 70 
W1L C9   H29 SING N N 71 
W1L N16  H30 SING N N 72 
W1L N23  H31 SING N N 73 
W1L O9   H32 SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
W1L SMILES           ACDLabs              12.01 "CC1(C)C2C(C(=O)NC(CC3CCNC3=O)CO)N(CC21)C(=O)N(c1ccc(Cl)cc1)c1ccc(Cl)cc1"                                                                                                                                                           
W1L InChI            InChI                1.06  "InChI=1S/C28H32Cl2N4O4/c1-28(2)22-14-33(24(23(22)28)26(37)32-19(15-35)13-16-11-12-31-25(16)36)27(38)34(20-7-3-17(29)4-8-20)21-9-5-18(30)6-10-21/h3-10,16,19,22-24,35H,11-15H2,1-2H3,(H,31,36)(H,32,37)/t16-,19-,22-,23-,24-/m0/s1" 
W1L InChIKey         InChI                1.06  RJGDIXDMKZVPNX-MUTMVCIVSA-N                                                                                                                                                                                                         
W1L SMILES_CANONICAL CACTVS               3.385 "CC1(C)[C@H]2CN([C@@H]([C@@H]12)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O)C(=O)N(c4ccc(Cl)cc4)c5ccc(Cl)cc5"                                                                                                                                    
W1L SMILES           CACTVS               3.385 "CC1(C)[CH]2CN([CH]([CH]12)C(=O)N[CH](CO)C[CH]3CCNC3=O)C(=O)N(c4ccc(Cl)cc4)c5ccc(Cl)cc5"                                                                                                                                            
W1L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)N(c3ccc(cc3)Cl)c4ccc(cc4)Cl)C(=O)N[C@@H](C[C@@H]5CCNC5=O)CO)C"                                                                                                                                    
W1L SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)N(c3ccc(cc3)Cl)c4ccc(cc4)Cl)C(=O)NC(CC5CCNC5=O)CO)C"                                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
W1L "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S,5S)-N~3~,N~3~-bis(4-chlorophenyl)-N~2~-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2,3-dicarboxamide"                              
W1L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-~{N}3,~{N}3-bis(4-chlorophenyl)-6,6-dimethyl-~{N}2-[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-3-azabicyclo[3.1.0]hexane-2,3-dicarboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
W1L "Create component" 2023-09-21 RCSB 
W1L "Initial release"  2024-09-25 RCSB 
W1L "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            W1L 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C8 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
