data_VUL
# 
_chem_comp.id                                    VUL 
_chem_comp.name                                  "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl N-decanoylsulfamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H32 N6 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-18 
_chem_comp.pdbx_modified_date                    2024-07-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        500.569 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VUL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8JYL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VUL C1  C1  C 0 1 N N N N N N 107.841 172.045 142.195 10.776 2.536  -0.455 C1  VUL 1  
VUL C2  C2  C 0 1 N N N N N N 109.017 172.992 142.411 9.552  2.101  0.353  C2  VUL 2  
VUL O1  O1  O 0 1 N N N N N N 116.999 177.162 145.037 0.969  -2.823 1.254  O1  VUL 3  
VUL C5  C3  C 0 1 N N N N N N 111.247 174.848 143.967 6.542  -0.115 -0.572 C5  VUL 4  
VUL C6  C4  C 0 1 N N N N N N 112.527 175.161 144.718 5.317  -0.549 0.236  C6  VUL 5  
VUL C7  C5  C 0 1 N N N N N N 113.796 174.724 144.016 4.424  -1.440 -0.631 C7  VUL 6  
VUL C8  C6  C 0 1 N N N N N N 114.854 175.789 144.216 3.200  -1.875 0.177  C8  VUL 7  
VUL N1  N1  N 0 1 N N N N N N 118.715 175.855 144.343 0.170  -3.988 -0.456 N1  VUL 8  
VUL C4  C7  C 0 1 N N N N N N 110.768 173.429 144.206 7.435  0.776  0.294  C4  VUL 9  
VUL C3  C8  C 0 1 N N N N N N 109.284 173.254 143.891 8.659  1.211  -0.514 C3  VUL 10 
VUL S1  S1  S 0 1 N N N N N N 119.938 176.848 145.016 -1.156 -4.458 0.418  S1  VUL 11 
VUL N2  N2  N 0 1 Y N N N N N 115.876 178.027 149.437 -2.444 1.991  0.047  N2  VUL 12 
VUL O2  O2  O 0 1 N N N N N N 120.135 178.104 144.006 -1.952 -5.249 -0.454 O2  VUL 13 
VUL N3  N3  N 0 1 Y N N N N N 114.180 177.211 148.417 -0.684 3.172  -0.473 N3  VUL 14 
VUL O3  O3  O 0 1 N N N N N N 121.330 176.021 145.160 -0.666 -4.931 1.665  O3  VUL 15 
VUL N4  N4  N 0 1 Y N N N N N 114.624 179.002 151.336 -3.802 3.925  0.850  N4  VUL 16 
VUL O4  O4  O 0 1 N N N N N N 119.553 177.459 146.484 -1.964 -3.205 0.721  O4  VUL 17 
VUL N5  N5  N 0 1 Y N N N N N 112.370 178.696 151.287 -2.738 5.973  0.721  N5  VUL 18 
VUL O5  O5  O 0 1 N N N N N N 118.153 178.280 148.469 -2.550 -0.377 0.341  O5  VUL 19 
VUL N6  N6  N 0 1 N N N N N N 111.277 177.535 149.556 -0.544 6.221  -0.108 N6  VUL 20 
VUL O6  O6  O 0 1 N N N N N N 118.785 178.303 151.389 -5.503 1.192  -0.824 O6  VUL 21 
VUL O7  O7  O 0 1 N N N N N N 119.283 175.779 150.419 -5.657 -1.339 -1.058 O7  VUL 22 
VUL C9  C9  C 0 1 N N N N N N 116.245 175.293 143.864 2.307  -2.765 -0.689 C9  VUL 23 
VUL C10 C10 C 0 1 N N N N N N 117.313 176.194 144.460 1.101  -3.193 0.107  C10 VUL 24 
VUL C11 C11 C 0 1 N N N N N N 119.387 176.553 147.516 -2.694 -2.700 -0.399 C11 VUL 25 
VUL C12 C12 C 0 1 N N R N N N 119.054 177.391 148.751 -3.465 -1.446 0.019  C12 VUL 26 
VUL C13 C13 C 0 1 N N S N N N 118.359 176.503 149.767 -4.299 -0.908 -1.165 C13 VUL 27 
VUL C14 C14 C 0 1 N N R N N N 117.718 177.581 150.645 -4.206 0.627  -1.023 C14 VUL 28 
VUL C15 C15 C 0 1 N N R N N N 117.217 178.399 149.771 -3.326 0.836  0.229  C15 VUL 29 
VUL C16 C16 C 0 1 Y N N N N N 114.797 178.339 150.177 -2.744 3.296  0.348  C16 VUL 30 
VUL C17 C17 C 0 1 Y N N N N N 113.720 177.815 149.531 -1.603 4.043  0.008  C17 VUL 31 
VUL C18 C18 C 0 1 Y N N N N N 115.482 177.348 148.381 -1.174 1.967  -0.446 C18 VUL 32 
VUL C19 C19 C 0 1 Y N N N N N 113.445 179.179 151.870 -3.785 5.229  1.027  C19 VUL 33 
VUL C20 C20 C 0 1 Y N N N N N 112.474 178.035 150.150 -1.635 5.433  0.212  C20 VUL 34 
VUL H1  H1  H 0 1 N N N N N N 107.689 171.888 141.117 11.412 3.170  0.162  H1  VUL 35 
VUL H2  H2  H 0 1 N N N N N N 108.053 171.080 142.679 11.336 1.655  -0.768 H2  VUL 36 
VUL H3  H3  H 0 1 N N N N N N 106.932 172.483 142.633 10.452 3.092  -1.334 H3  VUL 37 
VUL H4  H4  H 0 1 N N N N N N 109.917 172.547 141.962 9.876  1.545  1.232  H4  VUL 38 
VUL H5  H5  H 0 1 N N N N N N 108.796 173.949 141.916 8.992  2.982  0.666  H5  VUL 39 
VUL H6  H6  H 0 1 N N N N N N 111.427 174.983 142.890 7.102  -0.996 -0.886 H6  VUL 40 
VUL H7  H7  H 0 1 N N N N N N 110.464 175.546 144.298 6.218  0.442  -1.452 H7  VUL 41 
VUL H8  H8  H 0 1 N N N N N N 112.577 176.249 144.871 5.641  -1.106 1.115  H8  VUL 42 
VUL H9  H9  H 0 1 N N N N N N 112.484 174.655 145.694 4.757  0.332  0.549  H9  VUL 43 
VUL H10 H10 H 0 1 N N N N N N 113.599 174.595 142.941 4.100  -0.883 -1.510 H10 VUL 44 
VUL H11 H11 H 0 1 N N N N N N 114.145 173.771 144.441 4.984  -2.321 -0.944 H11 VUL 45 
VUL H12 H12 H 0 1 N N N N N N 114.846 176.102 145.271 3.524  -2.431 1.057  H12 VUL 46 
VUL H13 H13 H 0 1 N N N N N N 114.613 176.651 143.576 2.640  -0.993 0.491  H13 VUL 47 
VUL H14 H14 H 0 1 N N N N N N 118.976 175.021 143.857 0.275  -4.284 -1.374 H14 VUL 48 
VUL H15 H15 H 0 1 N N N N N N 110.938 173.172 145.262 6.874  1.657  0.608  H15 VUL 49 
VUL H16 H16 H 0 1 N N N N N N 111.348 172.748 143.565 7.758  0.220  1.174  H16 VUL 50 
VUL H17 H17 H 0 1 N N N N N N 108.752 174.170 144.187 8.335  1.767  -1.393 H17 VUL 51 
VUL H18 H18 H 0 1 N N N N N N 108.900 172.403 144.473 9.219  0.330  -0.827 H18 VUL 52 
VUL H19 H19 H 0 1 N N N N N N 110.494 177.777 150.128 0.256  5.815  -0.479 H19 VUL 53 
VUL H20 H20 H 0 1 N N N N N N 111.163 177.937 148.647 -0.578 7.180  0.037  H20 VUL 54 
VUL H21 H21 H 0 1 N N N N N N 118.392 178.973 151.936 -6.116 1.038  -1.556 H21 VUL 55 
VUL H22 H22 H 0 1 N N N N N N 118.856 175.220 151.057 -6.226 -1.030 -1.776 H22 VUL 56 
VUL H23 H23 H 0 1 N N N N N N 116.374 174.274 144.258 1.983  -2.208 -1.569 H23 VUL 57 
VUL H24 H24 H 0 1 N N N N N N 116.356 175.280 142.770 2.867  -3.646 -1.003 H24 VUL 58 
VUL H25 H25 H 0 1 N N N N N N 118.564 175.860 147.289 -2.001 -2.449 -1.202 H25 VUL 59 
VUL H26 H26 H 0 1 N N N N N N 120.313 175.982 147.678 -3.395 -3.458 -0.748 H26 VUL 60 
VUL H27 H27 H 0 1 N N N N N N 119.975 177.812 149.181 -4.109 -1.664 0.871  H27 VUL 61 
VUL H28 H28 H 0 1 N N N N N N 117.584 175.891 149.282 -3.870 -1.233 -2.113 H28 VUL 62 
VUL H29 H29 H 0 1 N N N N N N 116.982 177.136 151.331 -3.731 1.064  -1.902 H29 VUL 63 
VUL H30 H30 H 0 1 N N N N N N 117.246 179.444 150.113 -3.949 0.970  1.114  H30 VUL 64 
VUL H31 H31 H 0 1 N N N N N N 116.130 176.964 147.607 -0.653 1.079  -0.773 H31 VUL 65 
VUL H32 H32 H 0 1 N N N N N N 113.353 179.726 152.797 -4.661 5.709  1.437  H32 VUL 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VUL C1  C2  SING N N 1  
VUL C2  C3  SING N N 2  
VUL C9  C8  SING N N 3  
VUL C9  C10 SING N N 4  
VUL C3  C4  SING N N 5  
VUL C5  C4  SING N N 6  
VUL C5  C6  SING N N 7  
VUL O2  S1  DOUB N N 8  
VUL C7  C8  SING N N 9  
VUL C7  C6  SING N N 10 
VUL N1  C10 SING N N 11 
VUL N1  S1  SING N N 12 
VUL C10 O1  DOUB N N 13 
VUL S1  O3  DOUB N N 14 
VUL S1  O4  SING N N 15 
VUL O4  C11 SING N N 16 
VUL C11 C12 SING N N 17 
VUL C18 N3  DOUB Y N 18 
VUL C18 N2  SING Y N 19 
VUL N3  C17 SING Y N 20 
VUL O5  C12 SING N N 21 
VUL O5  C15 SING N N 22 
VUL C12 C13 SING N N 23 
VUL N2  C15 SING N N 24 
VUL N2  C16 SING Y N 25 
VUL C17 C20 DOUB Y N 26 
VUL C17 C16 SING Y N 27 
VUL N6  C20 SING N N 28 
VUL C13 O7  SING N N 29 
VUL C13 C14 SING N N 30 
VUL C15 C14 SING N N 31 
VUL C20 N5  SING Y N 32 
VUL C16 N4  DOUB Y N 33 
VUL C14 O6  SING N N 34 
VUL N5  C19 DOUB Y N 35 
VUL N4  C19 SING Y N 36 
VUL C1  H1  SING N N 37 
VUL C1  H2  SING N N 38 
VUL C1  H3  SING N N 39 
VUL C2  H4  SING N N 40 
VUL C2  H5  SING N N 41 
VUL C5  H6  SING N N 42 
VUL C5  H7  SING N N 43 
VUL C6  H8  SING N N 44 
VUL C6  H9  SING N N 45 
VUL C7  H10 SING N N 46 
VUL C7  H11 SING N N 47 
VUL C8  H12 SING N N 48 
VUL C8  H13 SING N N 49 
VUL N1  H14 SING N N 50 
VUL C4  H15 SING N N 51 
VUL C4  H16 SING N N 52 
VUL C3  H17 SING N N 53 
VUL C3  H18 SING N N 54 
VUL N6  H19 SING N N 55 
VUL N6  H20 SING N N 56 
VUL O6  H21 SING N N 57 
VUL O7  H22 SING N N 58 
VUL C9  H23 SING N N 59 
VUL C9  H24 SING N N 60 
VUL C11 H25 SING N N 61 
VUL C11 H26 SING N N 62 
VUL C12 H27 SING N N 63 
VUL C13 H28 SING N N 64 
VUL C14 H29 SING N N 65 
VUL C15 H30 SING N N 66 
VUL C18 H31 SING N N 67 
VUL C19 H32 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VUL InChI            InChI                1.06  "InChI=1S/C20H32N6O7S/c1-2-3-4-5-6-7-8-9-14(27)25-34(30,31)32-10-13-16(28)17(29)20(33-13)26-12-24-15-18(21)22-11-23-19(15)26/h11-13,16-17,20,28-29H,2-10H2,1H3,(H,25,27)(H2,21,22,23)/t13-,16-,17-,20-/m1/s1" 
VUL InChIKey         InChI                1.06  WHJSYVVAGQVYEC-AEVYOOLXSA-N                                                                                                                                                                                   
VUL SMILES_CANONICAL CACTVS               3.385 "CCCCCCCCCC(=O)N[S](=O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"                                                                                                                                  
VUL SMILES           CACTVS               3.385 "CCCCCCCCCC(=O)N[S](=O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"                                                                                                                                       
VUL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCC(=O)NS(=O)(=O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O"                                                                                                                                   
VUL SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCC(=O)NS(=O)(=O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O"                                                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           VUL 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-decanoylsulfamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VUL "Create component" 2023-08-18 PDBJ 
VUL "Initial release"  2024-07-10 RCSB 
# 
