data_VJL
# 
_chem_comp.id                                    VJL 
_chem_comp.name                                  "Co-linked Tetra-amido macrocyclic ligand" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H37 Co N7 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-09 
_chem_comp.pdbx_modified_date                    2023-10-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        670.646 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VJL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CRN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VJL C13 C1  C  0 1 Y N N 10.454 -3.989 -5.992  0.409  0.765  0.530  C13 VJL 1  
VJL C15 C2  C  0 1 Y N N 8.660  -3.701 -7.620  -1.974 0.693  0.571  C15 VJL 2  
VJL C20 C3  C  0 1 N N N 3.650  -2.422 -7.811  -5.629 -3.276 1.553  C20 VJL 3  
VJL C21 C4  C  0 1 N N N 3.943  -0.268 -6.577  -3.664 -1.965 2.396  C21 VJL 4  
VJL C24 C5  C  0 1 N N N 8.977  -0.122 -8.122  -8.754 0.495  0.139  C24 VJL 5  
VJL C11 C6  C  0 1 N N N 9.898  -3.433 -3.521  1.713  -0.783 -0.898 C11 VJL 6  
VJL C12 C7  C  0 1 Y N N 9.586  -3.571 -4.986  0.425  -0.315 -0.351 C12 VJL 7  
VJL C14 C8  C  0 1 Y N N 10.005 -4.061 -7.308  -0.780 1.283  1.000  C14 VJL 8  
VJL C18 C9  C  0 1 N N N 5.609  -2.134 -6.318  -3.981 -2.283 -0.108 C18 VJL 9  
VJL C23 C10 C  0 1 N N N 7.751  0.110  -9.035  -7.433 -0.237 -0.104 C23 VJL 10 
VJL C25 C11 C  0 1 N N N 7.903  1.590  -9.442  -7.758 -1.639 -0.624 C25 VJL 11 
VJL O3  O1  O  0 1 N N N 6.023  -1.503 -5.381  -4.141 -3.193 -0.893 O3  VJL 12 
VJL O6  O2  O  0 1 N N N 9.693  -4.135 -10.165 -3.971 3.425  1.127  O6  VJL 13 
VJL N7  N1  N  0 1 N N N 7.978  -3.686 -8.840  -3.190 1.384  0.577  N7  VJL 14 
VJL N4  N2  N  0 1 N N N 6.480  -2.934 -7.031  -3.152 -1.221 -0.255 N4  VJL 15 
VJL N6  N3  N  0 1 N N N 7.232  -2.010 -10.399 -5.456 0.965  -0.906 N6  VJL 16 
VJL N5  N4  N  0 1 N N N 5.661  -1.027 -8.319  -5.471 -0.864 1.163  N5  VJL 17 
VJL O4  O3  O  0 1 N N N 6.540  0.698  -7.086  -7.239 -0.083 2.289  O4  VJL 18 
VJL O5  O4  O  0 1 N N N 8.206  -0.179 -11.366 -7.162 0.669  -2.289 O5  VJL 19 
VJL C16 C12 C  0 1 Y N N 7.782  -3.263 -6.591  -1.962 -0.500 -0.194 C16 VJL 20 
VJL C27 C13 C  0 1 N N N 7.798  -3.171 -11.159 -4.887 2.315  -0.822 C27 VJL 21 
VJL C30 C14 C  0 1 N N N 8.528  -3.947 -10.060 -3.978 2.455  0.400  C30 VJL 22 
VJL C19 C15 C  0 1 N N N 4.673  -1.407 -7.298  -4.698 -2.094 1.276  C19 VJL 23 
VJL C17 C16 C  0 1 Y N N 8.288  -3.206 -5.299  -0.754 -0.965 -0.725 C17 VJL 24 
VJL C22 C17 C  0 1 N N N 6.484  0.036  -8.131  -6.717 -0.382 1.237  C22 VJL 25 
VJL C29 C18 C  0 1 N N N 6.706  -4.089 -11.714 -4.075 2.597  -2.088 C29 VJL 26 
VJL C26 C19 C  0 1 N N N 7.874  -0.792 -10.328 -6.674 0.503  -1.191 C26 VJL 27 
VJL C28 C20 C  0 1 N N N 8.808  -2.923 -12.286 -6.025 3.333  -0.721 C28 VJL 28 
VJL N3  N5  N  0 1 N N N 10.458 -4.419 -2.708  2.859  -0.167 -0.546 N3  VJL 29 
VJL C10 C21 C  0 1 N N N 9.908  -4.204 -1.274  4.138  -0.631 -1.089 C10 VJL 30 
VJL C9  C22 C  0 1 N N N 10.303 -3.079 -0.317  5.271  0.233  -0.533 C9  VJL 31 
VJL C8  C23 C  0 1 N N N 11.780 -2.624 -0.396  6.607  -0.252 -1.101 C8  VJL 32 
VJL C6  C24 C  0 1 N N N 12.007 -1.482 0.528   7.741  0.613  -0.545 C6  VJL 33 
VJL C5  C25 C  0 1 N N S 13.356 -0.755 0.338   9.077  0.128  -1.113 C5  VJL 34 
VJL C2  C26 C  0 1 N N S 13.559 0.618  1.011   10.242 0.975  -0.566 C2  VJL 35 
VJL N1  N6  N  0 1 N N N 13.078 0.597  2.402   9.879  1.501  0.759  N1  VJL 36 
VJL C1  C27 C  0 1 N N N 14.128 0.823  3.227   10.764 1.058  1.663  C1  VJL 37 
VJL O1  O5  O  0 1 N N N 14.037 0.812  4.447   10.704 1.340  2.844  O1  VJL 38 
VJL N2  N7  N  0 1 N N N 15.299 0.992  2.539   11.721 0.275  1.146  N2  VJL 39 
VJL C3  C28 C  0 1 N N R 15.121 0.884  1.106   11.500 0.138  -0.302 C3  VJL 40 
VJL C4  C29 C  0 1 N N N 15.882 -0.383 0.588   11.297 -1.350 -0.646 C4  VJL 41 
VJL S1  S1  S  0 1 N N N 14.751 -1.767 0.875   9.476  -1.557 -0.492 S1  VJL 42 
VJL O2  O6  O  0 1 N N N 9.091  -2.789 -2.918  1.741  -1.725 -1.667 O2  VJL 43 
VJL CO1 CO1 CO 0 0 N N R 6.402  -2.697 -8.860  -4.325 0.077  0.142  CO1 VJL 44 
VJL H1  H1  H  0 1 N N N 11.472 -4.257 -5.752  1.343  1.202  0.852  H1  VJL 45 
VJL H2  H2  H  0 1 N N N 2.941  -2.667 -7.007  -6.343 -3.376 0.736  H2  VJL 46 
VJL H3  H3  H  0 1 N N N 3.104  -1.993 -8.664  -5.041 -4.190 1.635  H3  VJL 47 
VJL H4  H4  H  0 1 N N N 4.170  -3.337 -8.132  -6.166 -3.105 2.486  H4  VJL 48 
VJL H5  H5  H  0 1 N N N 3.238  -0.689 -5.845  -3.082 -2.884 2.461  H5  VJL 49 
VJL H6  H6  H  0 1 N N N 4.676  0.366  -6.057  -2.999 -1.128 2.182  H6  VJL 50 
VJL H7  H7  H  0 1 N N N 3.391  0.337  -7.312  -4.174 -1.791 3.343  H7  VJL 51 
VJL H8  H8  H  0 1 N N N 8.890  0.506  -7.223  -8.551 1.478  0.564  H8  VJL 52 
VJL H9  H9  H  0 1 N N N 9.019  -1.181 -7.827  -9.284 0.611  -0.807 H9  VJL 53 
VJL H10 H10 H  0 1 N N N 9.895  0.143  -8.667  -9.368 -0.081 0.831  H10 VJL 54 
VJL H11 H11 H  0 1 N N N 10.673 -4.389 -8.091  -0.789 2.120  1.682  H11 VJL 55 
VJL H12 H12 H  0 1 N N N 7.819  2.227  -8.549  -8.401 -2.152 0.090  H12 VJL 56 
VJL H13 H13 H  0 1 N N N 8.887  1.742  -9.910  -8.270 -1.560 -1.583 H13 VJL 57 
VJL H14 H14 H  0 1 N N N 7.112  1.856  -10.158 -6.833 -2.202 -0.752 H14 VJL 58 
VJL H15 H15 H  0 1 N N N 7.642  -2.862 -4.505  -0.734 -1.798 -1.413 H15 VJL 59 
VJL H16 H16 H  0 1 N N N 5.961  -4.289 -10.930 -4.725 2.527  -2.960 H16 VJL 60 
VJL H17 H17 H  0 1 N N N 6.216  -3.600 -12.569 -3.650 3.599  -2.031 H17 VJL 61 
VJL H18 H18 H  0 1 N N N 7.156  -5.037 -12.042 -3.271 1.866  -2.174 H18 VJL 62 
VJL H19 H19 H  0 1 N N N 9.610  -2.264 -11.922 -6.617 3.129  0.171  H19 VJL 63 
VJL H20 H20 H  0 1 N N N 9.239  -3.882 -12.609 -5.608 4.338  -0.658 H20 VJL 64 
VJL H21 H21 H  0 1 N N N 8.299  -2.445 -13.136 -6.660 3.258  -1.604 H21 VJL 65 
VJL H22 H22 H  0 1 N N N 11.096 -5.133 -2.997  2.836  0.584  0.068  H22 VJL 66 
VJL H23 H23 H  0 1 N N N 8.819  -4.110 -1.395  4.299  -1.670 -0.802 H23 VJL 67 
VJL H24 H24 H  0 1 N N N 10.138 -5.135 -0.735  4.120  -0.553 -2.176 H24 VJL 68 
VJL H25 H25 H  0 1 N N N 9.668  -2.208 -0.537  5.110  1.272  -0.821 H25 VJL 69 
VJL H26 H26 H  0 1 N N N 10.109 -3.424 0.709   5.289  0.155  0.554  H26 VJL 70 
VJL H27 H27 H  0 1 N N N 12.435 -3.460 -0.110  6.768  -1.291 -0.814 H27 VJL 71 
VJL H28 H28 H  0 1 N N N 12.011 -2.312 -1.425  6.590  -0.174 -2.188 H28 VJL 72 
VJL H29 H29 H  0 1 N N N 11.199 -0.751 0.374   7.580  1.652  -0.832 H29 VJL 73 
VJL H30 H30 H  0 1 N N N 11.965 -1.862 1.559   7.758  0.534  0.542  H30 VJL 74 
VJL H31 H31 H  0 1 N N N 13.507 -0.618 -0.743  9.061  0.144  -2.202 H31 VJL 75 
VJL H32 H32 H  0 1 N N N 13.075 1.413  0.425   10.469 1.791  -1.253 H32 VJL 76 
VJL H33 H33 H  0 1 N N N 12.133 0.442  2.690   9.122  2.076  0.948  H33 VJL 77 
VJL H34 H34 H  0 1 N N N 16.180 1.170  2.977   12.444 -0.135 1.646  H34 VJL 78 
VJL H35 H35 H  0 1 N N N 15.411 1.790  0.554   12.347 0.545  -0.854 H35 VJL 79 
VJL H36 H36 H  0 1 N N N 16.818 -0.527 1.148   11.625 -1.560 -1.664 H36 VJL 80 
VJL H37 H37 H  0 1 N N N 16.108 -0.286 -0.484  11.819 -1.987 0.068  H37 VJL 81 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VJL C28 C27 SING N N 1  
VJL C29 C27 SING N N 2  
VJL O5  C26 DOUB N N 3  
VJL C27 N6  SING N N 4  
VJL C27 C30 SING N N 5  
VJL N6  C26 SING N N 6  
VJL N6  CO1 SING N N 7  
VJL C26 C23 SING N N 8  
VJL O6  C30 DOUB N N 9  
VJL C30 N7  SING N N 10 
VJL C25 C23 SING N N 11 
VJL C23 C22 SING N N 12 
VJL C23 C24 SING N N 13 
VJL CO1 N7  SING N N 14 
VJL CO1 N5  SING N N 15 
VJL CO1 N4  SING N N 16 
VJL N7  C15 SING N N 17 
VJL N5  C22 SING N N 18 
VJL N5  C19 SING N N 19 
VJL C22 O4  DOUB N N 20 
VJL C20 C19 SING N N 21 
VJL C15 C14 DOUB Y N 22 
VJL C15 C16 SING Y N 23 
VJL C14 C13 SING Y N 24 
VJL C19 C21 SING N N 25 
VJL C19 C18 SING N N 26 
VJL N4  C16 SING N N 27 
VJL N4  C18 SING N N 28 
VJL C16 C17 DOUB Y N 29 
VJL C18 O3  DOUB N N 30 
VJL C13 C12 DOUB Y N 31 
VJL C17 C12 SING Y N 32 
VJL C12 C11 SING N N 33 
VJL C11 O2  DOUB N N 34 
VJL C11 N3  SING N N 35 
VJL N3  C10 SING N N 36 
VJL C10 C9  SING N N 37 
VJL C8  C9  SING N N 38 
VJL C8  C6  SING N N 39 
VJL C5  C6  SING N N 40 
VJL C5  S1  SING N N 41 
VJL C5  C2  SING N N 42 
VJL C4  S1  SING N N 43 
VJL C4  C3  SING N N 44 
VJL C2  C3  SING N N 45 
VJL C2  N1  SING N N 46 
VJL C3  N2  SING N N 47 
VJL N1  C1  SING N N 48 
VJL N2  C1  SING N N 49 
VJL C1  O1  DOUB N N 50 
VJL C13 H1  SING N N 51 
VJL C20 H2  SING N N 52 
VJL C20 H3  SING N N 53 
VJL C20 H4  SING N N 54 
VJL C21 H5  SING N N 55 
VJL C21 H6  SING N N 56 
VJL C21 H7  SING N N 57 
VJL C24 H8  SING N N 58 
VJL C24 H9  SING N N 59 
VJL C24 H10 SING N N 60 
VJL C14 H11 SING N N 61 
VJL C25 H12 SING N N 62 
VJL C25 H13 SING N N 63 
VJL C25 H14 SING N N 64 
VJL C17 H15 SING N N 65 
VJL C29 H16 SING N N 66 
VJL C29 H17 SING N N 67 
VJL C29 H18 SING N N 68 
VJL C28 H19 SING N N 69 
VJL C28 H20 SING N N 70 
VJL C28 H21 SING N N 71 
VJL N3  H22 SING N N 72 
VJL C10 H23 SING N N 73 
VJL C10 H24 SING N N 74 
VJL C9  H25 SING N N 75 
VJL C9  H26 SING N N 76 
VJL C8  H27 SING N N 77 
VJL C8  H28 SING N N 78 
VJL C6  H29 SING N N 79 
VJL C6  H30 SING N N 80 
VJL C5  H31 SING N N 81 
VJL C2  H32 SING N N 82 
VJL N1  H33 SING N N 83 
VJL N2  H34 SING N N 84 
VJL C3  H35 SING N N 85 
VJL C4  H36 SING N N 86 
VJL C4  H37 SING N N 87 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VJL InChI            InChI                1.06  "InChI=1S/C29H41N7O6S.Co/c1-27(2)22(38)35-28(3,4)24(40)31-16-11-10-15(13-17(16)32-25(41)29(5,6)36-23(27)39)21(37)30-12-8-7-9-19-20-18(14-43-19)33-26(42)34-20;/h10-11,13,18-20H,7-9,12,14H2,1-6H3,(H7,30,31,32,33,34,35,36,37,38,39,40,41,42);/q;+4/p-4/t18-,19-,20-;/m0./s1" 
VJL InChIKey         InChI                1.06  TULPYLAKDFRJPS-HBSNOMOYSA-J                                                                                                                                                                                                                                                   
VJL SMILES_CANONICAL CACTVS               3.385 "CC1(C)N2C(=O)C(C)(C)C(=O)N3C(C)(C)C(=O)N4c5cc(ccc5N(C1=O)[Co@]234)C(=O)NCCCC[C@@H]6SC[C@@H]7NC(=O)N[C@H]67"                                                                                                                                                                  
VJL SMILES           CACTVS               3.385 "CC1(C)N2C(=O)C(C)(C)C(=O)N3C(C)(C)C(=O)N4c5cc(ccc5N(C1=O)[Co]234)C(=O)NCCCC[CH]6SC[CH]7NC(=O)N[CH]67"                                                                                                                                                                        
VJL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(C(=O)N2C(C(=O)N3[Co]24N(c5c3ccc(c5)C(=O)NCCCC[C@H]6[C@@H]7[C@H](CS6)NC(=O)N7)C(=O)C(N4C1=O)(C)C)(C)C)C"                                                                                                                                                                  
VJL SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C(=O)N2C(C(=O)N3[Co]24N(c5c3ccc(c5)C(=O)NCCCCC6C7C(CS6)NC(=O)N7)C(=O)C(N4C1=O)(C)C)(C)C)C"                                                                                                                                                                               
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VJL "Create component" 2023-03-09 PDBE 
VJL "Initial release"  2023-10-18 RCSB 
# 
