data_UEL
# 
_chem_comp.id                                    UEL 
_chem_comp.name                                  "(7R)-3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6,7-dihydro-3H-[1,2,3]triazolo[4,5-d]pyrimidin-7-ol" 
_chem_comp.type                                  "DNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H14 N5 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-17 
_chem_comp.pdbx_modified_date                    2023-01-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        335.211 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UEL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8E2P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UEL C4    C1  C 0 1 Y N N 27.239 11.002 27.912 -3.087 0.097  0.350  C4    UEL 1  
UEL C5    C2  C 0 1 Y N N 25.984 11.188 27.025 -3.733 0.797  -0.645 C5    UEL 2  
UEL C6    C3  C 0 1 N N R 25.975 12.508 26.134 -5.162 1.258  -0.460 C6    UEL 3  
UEL C2    C4  C 0 1 N N N 28.296 12.735 27.137 -4.828 0.378  1.820  C2    UEL 4  
UEL "C1'" C5  C 0 1 N N R 27.488 9.007  29.408 -0.783 -0.904 0.585  "C1'" UEL 5  
UEL "C2'" C6  C 0 1 N N N 26.699 8.895  30.689 -0.642 -2.318 -0.012 "C2'" UEL 6  
UEL "C3'" C7  C 0 1 N N S 27.070 7.563  31.135 0.829  -2.383 -0.490 "C3'" UEL 7  
UEL "C4'" C8  C 0 1 N N R 27.181 6.764  29.898 1.492  -1.260 0.347  "C4'" UEL 8  
UEL "C5'" C9  C 0 1 N N N 25.794 6.369  29.421 2.750  -0.739 -0.351 "C5'" UEL 9  
UEL N1    N1  N 0 1 N N N 27.474 13.074 25.946 -5.392 1.313  0.996  N1    UEL 10 
UEL N3    N2  N 0 1 N N N 28.128 11.774 27.930 -3.697 -0.210 1.531  N3    UEL 11 
UEL N7    N3  N 0 1 Y N N 25.232 10.073 27.321 -2.911 0.947  -1.664 N7    UEL 12 
UEL N8    N4  N 0 1 Y N N 25.699 9.364  28.082 -1.775 0.393  -1.400 N8    UEL 13 
UEL N9    N5  N 0 1 Y N N 26.741 9.733  28.462 -1.844 -0.172 -0.113 N9    UEL 14 
UEL "O3'" O1  O 0 1 N Y N 28.384 7.680  31.748 1.407  -3.654 -0.189 "O3'" UEL 15 
UEL "O4'" O2  O 0 1 N N N 27.772 7.632  28.896 0.476  -0.236 0.403  "O4'" UEL 16 
UEL "O5'" O3  O 0 1 N N N 25.267 5.341  30.209 3.405  0.209  0.494  "O5'" UEL 17 
UEL O6    O4  O 0 1 N N N 25.262 13.396 26.714 -6.060 0.325  -1.064 O6    UEL 18 
UEL OP1   O5  O 0 1 N N N 23.549 4.583  28.406 5.795  -0.039 -0.278 OP1   UEL 19 
UEL OP2   O6  O 0 1 N N N 23.895 3.134  30.402 4.484  1.915  -1.191 OP2   UEL 20 
UEL P     P1  P 0 1 N N N 24.546 4.083  29.425 4.766  0.963  0.076  P     UEL 21 
UEL OP3   O7  O 0 1 N Y N 25.759 3.345  28.673 5.287  1.854  1.312  OP3   UEL 22 
UEL H1    H1  H 0 1 N N N 25.591 12.242 25.138 -5.296 2.246  -0.900 H1    UEL 23 
UEL H2    H2  H 0 1 N N N 29.131 13.387 27.344 -5.335 0.117  2.737  H2    UEL 24 
UEL H3    H3  H 0 1 N N N 28.440 9.517  29.618 -1.018 -0.972 1.647  H3    UEL 25 
UEL H4    H4  H 0 1 N N N 27.001 9.662  31.417 -0.829 -3.074 0.751  H4    UEL 26 
UEL H5    H5  H 0 1 N N N 25.617 8.971  30.504 -1.323 -2.447 -0.853 H5    UEL 27 
UEL H6    H6  H 0 1 N N N 26.328 7.138  31.828 0.900  -2.167 -1.556 H6    UEL 28 
UEL H7    H7  H 0 1 N N N 27.797 5.868  30.064 1.731  -1.619 1.349  H7    UEL 29 
UEL H8    H8  H 0 1 N N N 25.130 7.244  29.481 3.424  -1.571 -0.554 H8    UEL 30 
UEL H9    H9  H 0 1 N N N 25.856 6.026  28.378 2.472  -0.259 -1.289 H9    UEL 31 
UEL H10   H10 H 0 1 N N N 27.801 13.578 25.147 -5.945 2.016  1.371  H10   UEL 32 
UEL H11   H11 H 0 1 N Y N 28.318 8.193  32.545 0.967  -4.399 -0.621 H11   UEL 33 
UEL H12   H12 H 0 1 N N N 24.378 13.068 26.828 -6.993 0.566  -0.978 H12   UEL 34 
UEL H13   H13 H 0 1 N N N 22.976 3.035  30.183 3.818  2.597  -1.030 H13   UEL 35 
UEL H14   H14 H 0 1 N N N 25.611 3.368  27.735 6.105  2.337  1.131  H14   UEL 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UEL N1    C6    SING N N 1  
UEL N1    C2    SING N N 2  
UEL C6    O6    SING N N 3  
UEL C6    C5    SING N N 4  
UEL C5    N7    SING Y N 5  
UEL C5    C4    DOUB Y N 6  
UEL C2    N3    DOUB N N 7  
UEL N7    N8    DOUB Y N 8  
UEL C4    N3    SING N N 9  
UEL C4    N9    SING Y N 10 
UEL N8    N9    SING Y N 11 
UEL OP1   P     DOUB N N 12 
UEL N9    "C1'" SING N N 13 
UEL "O4'" "C1'" SING N N 14 
UEL "O4'" "C4'" SING N N 15 
UEL "C1'" "C2'" SING N N 16 
UEL "C5'" "C4'" SING N N 17 
UEL "C5'" "O5'" SING N N 18 
UEL P     "O5'" SING N N 19 
UEL P     OP2   SING N N 20 
UEL "C4'" "C3'" SING N N 21 
UEL "C2'" "C3'" SING N N 22 
UEL "C3'" "O3'" SING N N 23 
UEL P     OP3   SING N N 24 
UEL C6    H1    SING N N 25 
UEL C2    H2    SING N N 26 
UEL "C1'" H3    SING N N 27 
UEL "C2'" H4    SING N N 28 
UEL "C2'" H5    SING N N 29 
UEL "C3'" H6    SING N N 30 
UEL "C4'" H7    SING N N 31 
UEL "C5'" H8    SING N N 32 
UEL "C5'" H9    SING N N 33 
UEL N1    H10   SING N N 34 
UEL "O3'" H11   SING N N 35 
UEL O6    H12   SING N N 36 
UEL OP2   H13   SING N N 37 
UEL OP3   H14   SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UEL SMILES           ACDLabs              12.01 "O=P(O)(O)OCC1OC(CC1O)n1nnc2c1N=CNC2O"                                                                                                               
UEL InChI            InChI                1.06  "InChI=1S/C9H14N5O7P/c15-4-1-6(21-5(4)2-20-22(17,18)19)14-8-7(12-13-14)9(16)11-3-10-8/h3-6,9,15-16H,1-2H2,(H,10,11)(H2,17,18,19)/t4-,5+,6+,9+/m0/s1" 
UEL InChIKey         InChI                1.06  JWFOELSSYQQOED-BKIHBWCSSA-N                                                                                                                          
UEL SMILES_CANONICAL CACTVS               3.385 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2nnc3[C@@H](O)NC=Nc23"                                                                                        
UEL SMILES           CACTVS               3.385 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2nnc3[CH](O)NC=Nc23"                                                                                               
UEL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@H](O[C@H]1n2c3c(nn2)[C@H](NC=N3)O)COP(=O)(O)O)O"                                                                                        
UEL SMILES           "OpenEye OEToolkits" 2.0.7 "C1C(C(OC1n2c3c(nn2)C(NC=N3)O)COP(=O)(O)O)O"                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
UEL "SYSTEMATIC NAME" ACDLabs              12.01 "(7R)-3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6,7-dihydro-3H-[1,2,3]triazolo[4,5-d]pyrimidin-7-ol"                               
UEL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},5~{R})-3-oxidanyl-5-[(7~{R})-7-oxidanyl-6,7-dihydro-[1,2,3]triazolo[4,5-d]pyrimidin-3-yl]oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UEL "Create component" 2022-08-17 RCSB 
UEL "Initial release"  2023-01-11 RCSB 
# 
