data_U4L
# 
_chem_comp.id                                    U4L 
_chem_comp.name                                  "(4P)-4-(5-methyl-1H-indazol-4-yl)-6-(2-propanoyl-2,6-diazaspiro[3.4]octan-6-yl)-2-(pyrrolidin-1-yl)pyrimidine-5-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H30 N8 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-04 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        470.569 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     U4L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8DNI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
U4L C11 C1  C 0 1 N N N N N N -1.192  -16.493 22.482 3.539  -1.135 -2.691 C11 U4L 1  
U4L C6  C2  C 0 1 Y N N N N N -0.845  -17.916 22.917 4.288  -0.409 -1.604 C6  U4L 2  
U4L C7  C3  C 0 1 Y N N N N N 0.493   -18.293 23.048 5.640  -0.146 -1.756 C7  U4L 3  
U4L C8  C4  C 0 1 Y N N N N N 0.838   -19.585 23.444 6.345  0.517  -0.775 C8  U4L 4  
U4L C9  C5  C 0 1 Y N N N N N -0.175  -20.506 23.704 5.702  0.932  0.388  C9  U4L 5  
U4L N5  N1  N 0 1 Y N N N N N -0.172  -21.780 24.094 6.118  1.595  1.515  N5  U4L 6  
U4L N6  N2  N 0 1 Y N N N N N -1.334  -22.196 24.201 5.015  1.740  2.365  N6  U4L 7  
U4L C12 C6  C 0 1 Y N N N N N -2.199  -21.221 23.893 3.963  1.204  1.815  C12 U4L 8  
U4L C10 C7  C 0 1 Y N N N N N -1.504  -20.133 23.572 4.330  0.674  0.559  C10 U4L 9  
U4L C5  C8  C 0 1 Y N N N N N -1.864  -18.834 23.174 3.619  -0.002 -0.457 C5  U4L 10 
U4L C2  C9  C 0 1 Y N N N N N -3.229  -18.512 23.071 2.175  -0.278 -0.299 C2  U4L 11 
U4L C3  C10 C 0 1 Y N N N N N -3.975  -18.758 21.909 1.263  0.775  -0.075 C3  U4L 12 
U4L C26 C11 C 0 1 N N N N N N -3.268  -19.326 20.802 1.710  2.133  0.006  C26 U4L 13 
U4L N8  N3  N 0 1 N N N N N N -2.695  -19.774 19.925 2.065  3.211  0.069  N8  U4L 14 
U4L N2  N4  N 0 1 Y N N N N N -3.846  -17.982 24.145 1.712  -1.523 -0.373 N2  U4L 15 
U4L C1  C12 C 0 1 Y N N N N N -5.155  -17.673 24.117 0.420  -1.780 -0.232 C1  U4L 16 
U4L N3  N5  N 0 1 N N N N N N -5.766  -17.114 25.166 -0.014 -3.088 -0.315 N3  U4L 17 
U4L C19 C13 C 0 1 N N N N N N -7.157  -16.636 25.127 -1.135 -3.335 0.616  C19 U4L 18 
U4L C20 C14 C 0 1 N N N N N N -7.325  -15.695 26.321 -0.952 -4.803 1.076  C20 U4L 19 
U4L C21 C15 C 0 1 N N N N N N -5.953  -15.637 27.006 0.593  -4.911 1.173  C21 U4L 20 
U4L C22 C16 C 0 1 N N N N N N -5.123  -16.797 26.449 1.077  -4.028 0.004  C22 U4L 21 
U4L N1  N6  N 0 1 Y N N N N N -5.879  -17.896 23.004 -0.471 -0.823 -0.014 N1  U4L 22 
U4L C4  C17 C 0 1 Y N N N N N -5.349  -18.432 21.893 -0.102 0.451  0.068  C4  U4L 23 
U4L N4  N7  N 0 1 N N N N N N -6.196  -18.627 20.859 -1.039 1.439  0.290  N4  U4L 24 
U4L C13 C18 C 0 1 N N N N N N -7.608  -18.170 20.855 -2.400 0.865  0.406  C13 U4L 25 
U4L C16 C19 C 0 1 N N N N N N -5.901  -19.438 19.665 -1.094 2.387  -0.854 C16 U4L 26 
U4L C15 C20 C 0 1 N N N N N N -7.267  -19.978 19.215 -2.489 3.049  -0.704 C15 U4L 27 
U4L C14 C21 C 0 1 N N N N N N -8.185  -18.794 19.568 -3.361 1.888  -0.203 C14 U4L 28 
U4L C18 C22 C 0 1 N N N N N N -8.348  -17.764 18.453 -4.553 2.286  0.666  C18 U4L 29 
U4L C17 C23 C 0 1 N N N N N N -9.688  -19.082 19.485 -4.369 1.338  -1.212 C17 U4L 30 
U4L N7  N8  N 0 1 N N N N N N -9.679  -18.354 18.193 -5.297 1.239  -0.066 N7  U4L 31 
U4L C23 C24 C 0 1 N N N N N N -10.503 -18.257 17.157 -6.386 0.493  0.204  C23 U4L 32 
U4L O1  O1  O 0 1 N N N N N N -10.251 -17.533 16.195 -6.968 0.628  1.259  O1  U4L 33 
U4L C24 C25 C 0 1 N N N N N N -11.826 -19.032 17.170 -6.881 -0.510 -0.806 C24 U4L 34 
U4L C25 C26 C 0 1 N N N N N N -13.144 -18.273 17.309 -8.121 -1.218 -0.256 C25 U4L 35 
U4L H1  H1  H 0 1 N N N N N N -1.260  -16.451 21.385 3.459  -2.191 -2.433 H1  U4L 36 
U4L H2  H2  H 0 1 N N N N N N -2.158  -16.201 22.920 2.541  -0.709 -2.791 H2  U4L 37 
U4L H3  H3  H 0 1 N N N N N N -0.409  -15.803 22.828 4.075  -1.031 -3.634 H3  U4L 38 
U4L H4  H4  H 0 1 N N N N N N 1.272   -17.574 22.840 6.148  -0.464 -2.655 H4  U4L 39 
U4L H5  H5  H 0 1 N N N N N N 1.875   -19.868 23.548 7.398  0.714  -0.908 H5  U4L 40 
U4L H6  H6  H 0 1 N N N N N N 0.649   -22.322 24.274 7.019  1.908  1.692  H6  U4L 41 
U4L H7  H7  H 0 1 N N N N N N -3.276  -21.304 23.903 2.974  1.171  2.249  H7  U4L 42 
U4L H8  H8  H 0 1 N N N N N N -7.347  -16.096 24.188 -1.074 -2.660 1.470  H8  U4L 43 
U4L H9  H9  H 0 1 N N N N N N -7.853  -17.484 25.210 -2.089 -3.214 0.103  H9  U4L 44 
U4L H10 H10 H 0 1 N N N N N N -7.625  -14.693 25.980 -1.416 -4.969 2.047  H10 U4L 45 
U4L H11 H11 H 0 1 N N N N N N -8.083  -16.088 27.015 -1.345 -5.497 0.333  H11 U4L 46 
U4L H12 H12 H 0 1 N N N N N N -5.460  -14.679 26.783 0.948  -4.517 2.125  H12 U4L 47 
U4L H13 H13 H 0 1 N N N N N N -6.070  -15.745 28.094 0.917  -5.943 1.039  H13 U4L 48 
U4L H14 H14 H 0 1 N N N N N N -5.157  -17.662 27.127 1.297  -4.649 -0.865 H14 U4L 49 
U4L H15 H15 H 0 1 N N N N N N -4.077  -16.491 26.297 1.968  -3.474 0.301  H15 U4L 50 
U4L H16 H16 H 0 1 N N N N N N -7.666  -17.072 20.820 -2.457 -0.075 -0.143 H16 U4L 51 
U4L H17 H17 H 0 1 N N N N N N -8.142  -18.537 21.744 -2.646 0.699  1.455  H17 U4L 52 
U4L H18 H18 H 0 1 N N N N N N -5.220  -20.265 19.916 -0.304 3.133  -0.773 H18 U4L 53 
U4L H19 H19 H 0 1 N N N N N N -5.450  -18.818 18.876 -1.020 1.851  -1.801 H19 U4L 54 
U4L H20 H20 H 0 1 N N N N N N -7.546  -20.885 19.772 -2.458 3.855  0.030  H20 U4L 55 
U4L H21 H21 H 0 1 N N N N N N -7.281  -20.192 18.136 -2.848 3.416  -1.666 H21 U4L 56 
U4L H22 H22 H 0 1 N N N N N N -7.631  -17.866 17.625 -4.417 2.070  1.726  H22 U4L 57 
U4L H23 H23 H 0 1 N N N N N N -8.368  -16.718 18.794 -4.915 3.297  0.481  H23 U4L 58 
U4L H24 H24 H 0 1 N N N N N N -10.291 -18.611 20.275 -4.677 2.063  -1.966 H24 U4L 59 
U4L H25 H25 H 0 1 N N N N N N -9.949  -20.148 19.411 -4.087 0.375  -1.637 H25 U4L 60 
U4L H26 H26 H 0 1 N N N N N N -11.878 -19.591 16.224 -7.137 0.003  -1.733 H26 U4L 61 
U4L H27 H27 H 0 1 N N N N N N -11.774 -19.739 18.012 -6.100 -1.245 -1.001 H27 U4L 62 
U4L H28 H28 H 0 1 N N N N N N -13.981 -18.986 17.299 -8.479 -1.943 -0.987 H28 U4L 63 
U4L H29 H29 H 0 1 N N N N N N -13.148 -17.716 18.258 -7.865 -1.731 0.671  H29 U4L 64 
U4L H30 H30 H 0 1 N Y N N N N -13.252 -17.569 16.471 -8.902 -0.483 -0.061 H30 U4L 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
U4L O1  C23 DOUB N N 1  
U4L C23 C24 SING N N 2  
U4L C23 N7  SING N N 3  
U4L C24 C25 SING N N 4  
U4L N7  C18 SING N N 5  
U4L N7  C17 SING N N 6  
U4L C18 C14 SING N N 7  
U4L C15 C14 SING N N 8  
U4L C15 C16 SING N N 9  
U4L C17 C14 SING N N 10 
U4L C14 C13 SING N N 11 
U4L C16 N4  SING N N 12 
U4L N8  C26 TRIP N N 13 
U4L C26 C3  SING N N 14 
U4L C13 N4  SING N N 15 
U4L N4  C4  SING N N 16 
U4L C4  C3  DOUB Y N 17 
U4L C4  N1  SING Y N 18 
U4L C3  C2  SING Y N 19 
U4L C11 C6  SING N N 20 
U4L C6  C7  DOUB Y N 21 
U4L C6  C5  SING Y N 22 
U4L N1  C1  DOUB Y N 23 
U4L C7  C8  SING Y N 24 
U4L C2  C5  SING N N 25 
U4L C2  N2  DOUB Y N 26 
U4L C5  C10 DOUB Y N 27 
U4L C8  C9  DOUB Y N 28 
U4L C10 C9  SING Y N 29 
U4L C10 C12 SING Y N 30 
U4L C9  N5  SING Y N 31 
U4L C12 N6  DOUB Y N 32 
U4L N5  N6  SING Y N 33 
U4L C1  N2  SING Y N 34 
U4L C1  N3  SING N N 35 
U4L C19 N3  SING N N 36 
U4L C19 C20 SING N N 37 
U4L N3  C22 SING N N 38 
U4L C20 C21 SING N N 39 
U4L C22 C21 SING N N 40 
U4L C11 H1  SING N N 41 
U4L C11 H2  SING N N 42 
U4L C11 H3  SING N N 43 
U4L C7  H4  SING N N 44 
U4L C8  H5  SING N N 45 
U4L N5  H6  SING N N 46 
U4L C12 H7  SING N N 47 
U4L C19 H8  SING N N 48 
U4L C19 H9  SING N N 49 
U4L C20 H10 SING N N 50 
U4L C20 H11 SING N N 51 
U4L C21 H12 SING N N 52 
U4L C21 H13 SING N N 53 
U4L C22 H14 SING N N 54 
U4L C22 H15 SING N N 55 
U4L C13 H16 SING N N 56 
U4L C13 H17 SING N N 57 
U4L C16 H18 SING N N 58 
U4L C16 H19 SING N N 59 
U4L C15 H20 SING N N 60 
U4L C15 H21 SING N N 61 
U4L C18 H22 SING N N 62 
U4L C18 H23 SING N N 63 
U4L C17 H24 SING N N 64 
U4L C17 H25 SING N N 65 
U4L C24 H26 SING N N 66 
U4L C24 H27 SING N N 67 
U4L C25 H28 SING N N 68 
U4L C25 H29 SING N N 69 
U4L C25 H30 SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
U4L SMILES           ACDLabs              12.01 "CCC(=O)N1CC2(CCN(C2)c2nc(nc(c3c(C)ccc4[NH]ncc34)c2C#N)N2CCCC2)C1"                                                                                                                
U4L InChI            InChI                1.06  "InChI=1S/C26H30N8O/c1-3-21(35)34-15-26(16-34)8-11-33(14-26)24-18(12-27)23(29-25(30-24)32-9-4-5-10-32)22-17(2)6-7-20-19(22)13-28-31-20/h6-7,13H,3-5,8-11,14-16H2,1-2H3,(H,28,31)" 
U4L InChIKey         InChI                1.06  FTVJMOHSJKCESM-UHFFFAOYSA-N                                                                                                                                                       
U4L SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N1CC2(CCN(C2)c3nc(nc(c3C#N)c4c(C)ccc5[nH]ncc45)N6CCCC6)C1"                                                                                                                
U4L SMILES           CACTVS               3.385 "CCC(=O)N1CC2(CCN(C2)c3nc(nc(c3C#N)c4c(C)ccc5[nH]ncc45)N6CCCC6)C1"                                                                                                                
U4L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CC2(C1)CCN(C2)c3c(c(nc(n3)N4CCCC4)c5c(ccc6c5cn[nH]6)C)C#N"                                                                                                              
U4L SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CC2(C1)CCN(C2)c3c(c(nc(n3)N4CCCC4)c5c(ccc6c5cn[nH]6)C)C#N"                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
U4L "SYSTEMATIC NAME" ACDLabs              12.01 "(4P)-4-(5-methyl-1H-indazol-4-yl)-6-(2-propanoyl-2,6-diazaspiro[3.4]octan-6-yl)-2-(pyrrolidin-1-yl)pyrimidine-5-carbonitrile" 
U4L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-(5-methyl-1~{H}-indazol-4-yl)-6-(2-propanoyl-2,7-diazaspiro[3.4]octan-7-yl)-2-pyrrolidin-1-yl-pyrimidine-5-carbonitrile"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
U4L "Create component" 2022-08-04 RCSB 
U4L "Initial release"  2022-08-17 RCSB 
U4L "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            U4L 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C25 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
