data_QHL
# 
_chem_comp.id                                    QHL 
_chem_comp.name                                  "delta-[Ru(tap2-dppz-CN)]2+" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C39 H21 N13 Ru" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Cyano-derivative of Ruthenium-dipyridophenazine" 
_chem_comp.pdbx_formal_charge                    6 
_chem_comp.pdbx_initial_date                     2016-11-24 
_chem_comp.pdbx_modified_date                    2024-01-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        772.741 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     QHL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5LS8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
QHL C1  C1  C  0 1 Y N N N N N 23.122 30.699 4.139  -1.209  -0.049 -0.781 C1  QHL 1  
QHL C10 C2  C  0 1 Y N N N N N 24.223 30.170 3.495  -1.108  -0.956 0.341  C10 QHL 2  
QHL C11 C3  C  0 1 Y N N N N N 26.334 29.168 2.122  -0.851  -2.801 2.345  C11 QHL 3  
QHL C12 C4  C  0 1 Y N N N N N 25.258 29.711 1.407  0.235   -2.136 1.795  C12 QHL 4  
QHL C13 C5  C  0 1 Y N N N N N 26.133 29.136 7.682  -5.879  -1.061 0.683  C13 QHL 5  
QHL C14 C6  C  0 1 Y N N N N N 27.160 28.606 8.450  -7.055  -1.439 1.359  C14 QHL 6  
QHL C15 C7  C  0 1 Y N N N N N 25.025 29.681 8.318  -5.975  -0.130 -0.443 C15 QHL 7  
QHL C16 C8  C  0 1 Y N N N N N 24.949 29.687 9.712  -7.238  0.363  -0.813 C16 QHL 8  
QHL C17 C9  C  0 1 Y N N N N N 25.979 29.148 10.472 -8.358  -0.029 -0.101 C17 QHL 9  
QHL C18 C10 C  0 1 Y N N N N N 27.092 28.621 9.835  -8.253  -0.930 0.976  C18 QHL 10 
QHL C19 C11 C  0 1 Y N N N N N 22.014 28.774 -0.323 3.177   -2.072 -0.698 C19 QHL 11 
QHL C2  C12 C  0 1 Y N N N N N 20.997 31.756 3.892  -0.131  1.182  -2.405 C2  QHL 12 
QHL C20 C13 C  0 1 Y N N N N N 21.088 28.398 1.813  1.760   -1.945 -2.471 C20 QHL 13 
QHL C21 C14 C  0 1 Y N N N N N 20.675 27.149 1.342  2.444   -2.994 -3.089 C21 QHL 14 
QHL C22 C15 C  0 1 Y N N N N N 21.605 27.540 -0.774 3.882   -3.134 -1.311 C22 QHL 15 
QHL C23 C16 C  0 1 Y N N N N N 21.897 27.183 -2.093 4.990   -3.703 -0.641 C23 QHL 16 
QHL C24 C17 C  0 1 Y N N N N N 22.600 28.062 -2.927 5.383   -3.263 0.578  C24 QHL 17 
QHL C25 C18 C  0 1 Y N N N N N 23.008 29.308 -2.446 4.701   -2.210 1.237  C25 QHL 18 
QHL C26 C19 C  0 1 Y N N N N N 22.704 29.640 -1.148 3.593   -1.605 0.597  C26 QHL 19 
QHL C27 C20 C  0 1 Y N N N N N 24.059 31.397 -2.669 4.397   -0.788 3.009  C27 QHL 20 
QHL C28 C21 C  0 1 Y N N N N N 23.757 31.748 -1.351 3.309   -0.197 2.365  C28 QHL 21 
QHL C29 C22 C  0 1 Y N N N N N 22.132 33.918 1.212  1.580   2.569  0.812  C29 QHL 22 
QHL C3  C23 C  0 1 Y N N N N N 20.886 31.785 5.274  -1.321  1.472  -3.055 C3  QHL 23 
QHL C30 C24 C  0 1 Y N N N N N 24.352 33.460 1.924  0.101   1.543  2.202  C30 QHL 24 
QHL C31 C25 C  0 1 Y N N N N N 24.545 34.843 1.989  -0.081  2.741  2.893  C31 QHL 25 
QHL C32 C26 C  0 1 Y N N N N N 22.337 35.271 1.275  1.406   3.792  1.503  C32 QHL 26 
QHL C33 C27 C  0 1 Y N N N N N 21.280 36.115 0.931  2.129   4.930  1.075  C33 QHL 27 
QHL C34 C28 C  0 1 Y N N N N N 20.047 35.582 0.529  2.981   4.869  0.024  C34 QHL 28 
QHL C35 C29 C  0 1 Y N N N N N 19.864 34.199 0.481  3.186   3.668  -0.692 C35 QHL 29 
QHL C36 C30 C  0 1 Y N N N N N 20.919 33.394 0.817  2.481   2.504  -0.303 C36 QHL 30 
QHL C37 C31 C  0 1 Y N N N N N 18.603 32.262 0.060  4.178   2.445  -2.359 C37 QHL 31 
QHL C38 C32 C  0 1 Y N N N N N 19.665 31.429 0.407  3.473   1.307  -1.965 C38 QHL 32 
QHL C39 C33 C  0 1 N N N N N N 25.930 29.173 11.764 -9.645  0.487  -0.467 C39 QHL 33 
QHL C4  C34 C  0 1 Y N N N N N 21.899 31.269 6.083  -2.512  1.037  -2.510 C4  QHL 34 
QHL C5  C35 C  0 1 Y N N N N N 23.037 30.718 5.506  -2.461  0.276  -1.340 C5  QHL 35 
QHL C6  C36 C  0 1 Y N N N N N 24.088 30.185 6.249  -3.693  -0.172 -0.674 C6  QHL 36 
QHL C7  C37 C  0 1 Y N N N N N 25.208 29.646 5.608  -3.595  -1.102 0.453  C7  QHL 37 
QHL C8  C38 C  0 1 Y N N N N N 25.277 29.646 4.218  -2.264  -1.526 0.914  C8  QHL 38 
QHL C9  C39 C  0 1 Y N N N N N 26.358 29.128 3.520  -2.125  -2.485 1.918  C9  QHL 39 
QHL N1  N1  N  1 1 Y N N N N N 24.223 30.210 2.093  0.077   -1.232 0.841  N1  QHL 40 
QHL N10 N2  N  0 1 Y N N N N N 23.556 35.708 1.675  0.565   3.833  2.538  N10 QHL 41 
QHL N11 N3  N  0 1 Y N N N N N 18.712 33.606 0.101  4.025   3.590  -1.726 N11 QHL 42 
QHL N12 N4  N  1 1 Y N N N N N 20.800 32.010 0.779  2.639   1.367  -0.944 N12 QHL 43 
QHL N2  N5  N  1 1 Y N N N N N 22.090 31.208 3.353  -0.111  0.460  -1.295 N2  QHL 44 
QHL N3  N6  N  0 1 Y N N N N N 24.012 30.197 7.590  -4.873  0.251  -1.090 N3  QHL 45 
QHL N4  N7  N  0 1 Y N N N N N 26.221 29.125 6.329  -4.688  -1.523 1.065  N4  QHL 46 
QHL N5  N8  N  1 1 Y N N N N N 21.750 29.201 0.980  2.145   -1.507 -1.288 N5  QHL 47 
QHL N6  N9  N  0 1 Y N N N N N 20.927 26.742 0.082  3.480   -3.564 -2.507 N6  QHL 48 
QHL N7  N10 N  0 1 Y N N N N N 23.690 30.210 -3.187 5.065   -1.769 2.440  N7  QHL 49 
QHL N74 N11 N  0 1 N N N N N N 25.892 29.141 12.924 -10.665 0.896  -0.756 N74 QHL 50 
QHL N8  N12 N  1 1 Y N N N N N 23.081 30.869 -0.614 2.938   -0.622 1.171  N8  QHL 51 
QHL N9  N13 N  1 1 Y N N N N N 23.152 33.017 1.527  0.926   1.490  1.176  N9  QHL 52 
QHL RU  RU1 RU 0 0 N N N N N N 22.512 31.076 1.342  1.445   -0.034 -0.077 RU  QHL 53 
QHL H1  H1  H  0 1 N N N N N N 27.174 28.766 1.575  -0.699  -3.552 3.104  H1  QHL 54 
QHL H2  H2  H  0 1 N N N N N N 25.264 29.726 0.327  1.232   -2.363 2.151  H2  QHL 55 
QHL H3  H3  H  0 1 N N N N N N 28.023 28.176 7.963  -7.004  -2.134 2.184  H3  QHL 56 
QHL H4  H4  H  0 1 N N N N N N 24.086 30.113 10.202 -7.333  1.047  -1.642 H4  QHL 57 
QHL H5  H5  H  0 1 N N N N N N 27.908 28.221 10.419 -9.148  -1.216 1.515  H5  QHL 58 
QHL H6  H6  H  0 1 N N N N N N 20.218 32.167 3.266  0.802   1.543  -2.819 H6  QHL 59 
QHL H7  H7  H  0 1 N N N N N N 20.876 28.705 2.827  0.913   -1.491 -2.964 H7  QHL 60 
QHL H8  H8  H  0 1 N N N N N N 20.138 26.490 2.008  2.118   -3.344 -4.060 H8  QHL 61 
QHL H9  H9  H  0 1 N N N N N N 21.579 26.223 -2.472 5.537   -4.510 -1.113 H9  QHL 62 
QHL H10 H10 H  0 1 N N N N N N 22.827 27.776 -3.943 6.237   -3.724 1.058  H10 QHL 63 
QHL H11 H11 H  0 1 N N N N N N 24.602 32.095 -3.288 4.695   -0.435 3.987  H11 QHL 64 
QHL H12 H12 H  0 1 N N N N N N 24.062 32.701 -0.943 2.771   0.608  2.844  H12 QHL 65 
QHL H13 H13 H  0 1 N N N N N N 20.005 32.212 5.730  -1.313  2.028  -3.979 H13 QHL 66 
QHL H14 H14 H  0 1 N N N N N N 25.143 32.773 2.185  -0.439  0.659  2.508  H14 QHL 67 
QHL H15 H15 H  0 1 N N N N N N 25.506 35.228 2.297  -0.764  2.776  3.732  H15 QHL 68 
QHL H16 H16 H  0 1 N N N N N N 21.413 37.186 0.975  1.998   5.871  1.596  H16 QHL 69 
QHL H17 H17 H  0 1 N N N N N N 19.237 36.243 0.256  3.516   5.762  -0.274 H17 QHL 70 
QHL H18 H18 H  0 1 N N N N N N 17.668 31.820 -0.250 4.859   2.386  -3.198 H18 QHL 71 
QHL H19 H19 H  0 1 N N N N N N 19.569 30.354 0.375  3.611   0.377  -2.496 H19 QHL 72 
QHL H20 H20 H  0 1 N N N N N N 21.799 31.298 7.158  -3.453  1.264  -2.980 H20 QHL 73 
QHL H21 H21 H  0 1 N N N N N N 27.201 28.703 4.045  -2.987  -2.970 2.344  H21 QHL 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
QHL N7  C27 DOUB Y N 1  
QHL N7  C25 SING Y N 2  
QHL C24 C25 DOUB Y N 3  
QHL C24 C23 SING Y N 4  
QHL C27 C28 SING Y N 5  
QHL C25 C26 SING Y N 6  
QHL C23 C22 DOUB Y N 7  
QHL C28 N8  DOUB Y N 8  
QHL C26 N8  SING Y N 9  
QHL C26 C19 DOUB Y N 10 
QHL C22 C19 SING Y N 11 
QHL C22 N6  SING Y N 12 
QHL N8  RU  SING N N 13 
QHL C19 N5  SING Y N 14 
QHL C37 N11 DOUB Y N 15 
QHL C37 C38 SING Y N 16 
QHL N6  C21 DOUB Y N 17 
QHL N11 C35 SING Y N 18 
QHL C38 N12 DOUB Y N 19 
QHL C35 C34 DOUB Y N 20 
QHL C35 C36 SING Y N 21 
QHL C34 C33 SING Y N 22 
QHL N12 C36 SING Y N 23 
QHL N12 RU  SING N N 24 
QHL C36 C29 DOUB Y N 25 
QHL C33 C32 DOUB Y N 26 
QHL N5  RU  SING N N 27 
QHL N5  C20 DOUB Y N 28 
QHL C29 C32 SING Y N 29 
QHL C29 N9  SING Y N 30 
QHL C32 N10 SING Y N 31 
QHL RU  N9  SING N N 32 
QHL RU  N1  SING N N 33 
QHL RU  N2  SING N N 34 
QHL C21 C20 SING Y N 35 
QHL C12 N1  DOUB Y N 36 
QHL C12 C11 SING Y N 37 
QHL N9  C30 DOUB Y N 38 
QHL N10 C31 DOUB Y N 39 
QHL C30 C31 SING Y N 40 
QHL N1  C10 SING Y N 41 
QHL C11 C9  DOUB Y N 42 
QHL N2  C2  DOUB Y N 43 
QHL N2  C1  SING Y N 44 
QHL C10 C1  DOUB Y N 45 
QHL C10 C8  SING Y N 46 
QHL C9  C8  SING Y N 47 
QHL C2  C3  SING Y N 48 
QHL C1  C5  SING Y N 49 
QHL C8  C7  DOUB Y N 50 
QHL C3  C4  DOUB Y N 51 
QHL C5  C4  SING Y N 52 
QHL C5  C6  DOUB Y N 53 
QHL C7  C6  SING Y N 54 
QHL C7  N4  SING Y N 55 
QHL C6  N3  SING Y N 56 
QHL N4  C13 DOUB Y N 57 
QHL N3  C15 DOUB Y N 58 
QHL C13 C15 SING Y N 59 
QHL C13 C14 SING Y N 60 
QHL C15 C16 SING Y N 61 
QHL C14 C18 DOUB Y N 62 
QHL C16 C17 DOUB Y N 63 
QHL C18 C17 SING Y N 64 
QHL C17 C39 SING N N 65 
QHL C39 N74 TRIP N N 66 
QHL C11 H1  SING N N 67 
QHL C12 H2  SING N N 68 
QHL C14 H3  SING N N 69 
QHL C16 H4  SING N N 70 
QHL C18 H5  SING N N 71 
QHL C2  H6  SING N N 72 
QHL C20 H7  SING N N 73 
QHL C21 H8  SING N N 74 
QHL C23 H9  SING N N 75 
QHL C24 H10 SING N N 76 
QHL C27 H11 SING N N 77 
QHL C28 H12 SING N N 78 
QHL C3  H13 SING N N 79 
QHL C30 H14 SING N N 80 
QHL C31 H15 SING N N 81 
QHL C33 H16 SING N N 82 
QHL C34 H17 SING N N 83 
QHL C37 H18 SING N N 84 
QHL C38 H19 SING N N 85 
QHL C4  H20 SING N N 86 
QHL C9  H21 SING N N 87 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
QHL InChI            InChI                1.03  "InChI=1S/C19H9N5.2C10H6N4.Ru/c20-10-11-5-6-14-15(9-11)24-19-13-4-2-8-22-17(13)16-12(18(19)23-14)3-1-7-21-16;2*1-2-8-10(14-6-4-12-8)9-7(1)11-3-5-13-9;/h1-9H;2*1-6H;/q;;;+6" 
QHL InChIKey         InChI                1.03  HNFPSJMHTKCUIN-UHFFFAOYSA-N                                                                                                                                                  
QHL SMILES_CANONICAL CACTVS               3.385 "N#Cc1ccc2nc3c4ccc[n+]5c4c6c(ccc[n+]6[Ru]578([n+]9ccnc%10ccc%11ncc[n+]7c%11c9%10)[n+]%12ccnc%13ccc%14ncc[n+]8c%14c%12%13)c3nc2c1"                                            
QHL SMILES           CACTVS               3.385 "N#Cc1ccc2nc3c4ccc[n+]5c4c6c(ccc[n+]6[Ru]578([n+]9ccnc%10ccc%11ncc[n+]7c%11c9%10)[n+]%12ccnc%13ccc%14ncc[n+]8c%14c%12%13)c3nc2c1"                                            
QHL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc2c3c(c4ccc[n+]5c4c2[n+](c1)[Ru]567([n+]8ccnc9c8c1[n+]6ccnc1cc9)[n+]1ccnc2c1c1[n+]7ccnc1cc2)nc1cc(ccc1n3)C#N"                                                            
QHL SMILES           "OpenEye OEToolkits" 2.0.6 "c1cc2c3c(c4ccc[n+]5c4c2[n+](c1)[Ru]567([n+]8ccnc9c8c1[n+]6ccnc1cc9)[n+]1ccnc2c1c1[n+]7ccnc1cc2)nc1cc(ccc1n3)C#N"                                                            
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
QHL "Create component" 2016-11-24 EBI  
QHL "Initial release"  2018-01-17 RCSB 
QHL "Modify synonyms"  2021-03-01 PDBE 
QHL "Modify name"      2024-01-03 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      QHL 
_pdbx_chem_comp_synonyms.name         "Cyano-derivative of Ruthenium-dipyridophenazine" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
