data_Q8L
# 
_chem_comp.id                                    Q8L 
_chem_comp.name                                  Piclidenoson 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H19 I N6 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-01 
_chem_comp.pdbx_modified_date                    2023-01-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        510.286 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CXW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Q8L O1  O1  O 0 1 N N N -35.419 1.437  13.821 -5.675 1.460  -2.184 O1  Q8L 1  
Q8L C7  C1  C 0 1 Y N N -30.495 1.783  12.899 -1.134 1.156  0.367  C7  Q8L 2  
Q8L O2  O2  O 0 1 N N N -33.890 -2.706 13.181 -6.621 -2.125 1.854  O2  Q8L 3  
Q8L C2  C2  C 0 1 N N S -34.172 -1.644 15.303 -6.648 -0.415 0.227  C2  Q8L 4  
Q8L C3  C3  C 0 1 N N N -33.953 -2.853 14.398 -7.183 -1.662 0.884  C3  Q8L 5  
Q8L C4  C4  C 0 1 N N N -33.711 -5.262 14.215 -8.806 -3.473 1.033  C4  Q8L 6  
Q8L C5  C5  C 0 1 N N R -33.358 0.467  14.680 -4.756 0.904  0.014  C5  Q8L 7  
Q8L C6  C6  C 0 1 Y N N -31.861 0.178  12.669 -2.691 -0.268 0.869  C6  Q8L 8  
Q8L C1  C7  C 0 1 N N R -34.670 0.224  13.942 -5.088 0.409  -1.414 C1  Q8L 9  
Q8L C8  C8  C 0 1 Y N N -31.382 1.879  13.963 -2.356 1.702  -0.062 C8  Q8L 10 
Q8L O3  O3  O 0 1 N N N -33.031 -0.763 15.297 -5.486 0.073  0.932  O3  Q8L 11 
Q8L C9  C9  C 0 1 Y N N -30.391 3.674  14.765 -1.235 3.555  -0.832 C9  Q8L 12 
Q8L C10 C10 C 0 1 Y N N -29.477 2.775  12.849 0.038  1.900  0.152  C10 Q8L 13 
Q8L C11 C11 C 0 1 N N N -28.397 1.861  10.812 2.481  2.203  0.320  C11 Q8L 14 
Q8L N   N1  N 0 1 N N N -33.838 -4.038 14.984 -8.286 -2.261 0.394  N   Q8L 15 
Q8L C   C12 C 0 1 N N S -35.360 -0.767 14.895 -6.106 -0.735 -1.190 C   Q8L 16 
Q8L O   O4  O 0 1 N N N -35.959 -0.147 16.034 -7.154 -0.682 -2.160 O   Q8L 17 
Q8L C12 C13 C 0 1 Y N N -29.102 2.282  9.545  3.678  1.455  0.847  C12 Q8L 18 
Q8L C13 C14 C 0 1 Y N N -29.127 1.444  8.436  4.366  0.584  0.024  C13 Q8L 19 
Q8L C14 C15 C 0 1 Y N N -29.770 1.839  7.275  5.464  -0.103 0.507  C14 Q8L 20 
Q8L C15 C16 C 0 1 Y N N -30.392 3.068  7.190  5.874  0.082  1.815  C15 Q8L 21 
Q8L C16 C17 C 0 1 Y N N -30.373 3.905  8.292  5.186  0.953  2.638  C16 Q8L 22 
Q8L C17 C18 C 0 1 Y N N -29.736 3.516  9.460  4.091  1.643  2.153  C17 Q8L 23 
Q8L I   I1  I 0 1 N N N -29.817 0.541  5.623  6.507  -1.424 -0.741 I   Q8L 24 
Q8L N1  N2  N 0 1 Y N N -32.259 0.834  13.799 -3.319 0.783  0.268  N1  Q8L 25 
Q8L N2  N3  N 0 1 Y N N -30.809 0.708  12.088 -1.411 -0.045 0.931  N2  Q8L 26 
Q8L N3  N4  N 0 1 Y N N -31.386 2.800  14.925 -2.358 2.894  -0.651 N3  Q8L 27 
Q8L N4  N5  N 0 1 Y N N -29.457 3.717  13.809 -0.064 3.082  -0.446 N4  Q8L 28 
Q8L N5  N6  N 0 1 N N N -28.519 2.821  11.898 1.269  1.413  0.554  N5  Q8L 29 
Q8L H1  H1  H 0 1 N N N -36.231 1.264  13.359 -5.903 1.205  -3.088 H1  Q8L 30 
Q8L H2  H2  H 0 1 N N N -34.348 -2.007 16.326 -7.419 0.353  0.179  H2  Q8L 31 
Q8L H3  H3  H 0 1 N N N -33.629 -6.119 14.900 -9.695 -3.810 0.501  H3  Q8L 32 
Q8L H4  H4  H 0 1 N N N -34.597 -5.387 13.576 -8.046 -4.254 1.003  H4  Q8L 33 
Q8L H5  H5  H 0 1 N N N -32.810 -5.208 13.586 -9.063 -3.255 2.070  H5  Q8L 34 
Q8L H6  H6  H 0 1 N N N -33.511 1.251  15.436 -5.066 1.943  0.128  H6  Q8L 35 
Q8L H7  H7  H 0 1 N N N -32.366 -0.697 12.288 -3.185 -1.153 1.242  H7  Q8L 36 
Q8L H8  H8  H 0 1 N N N -34.485 -0.247 12.965 -4.190 0.033  -1.905 H8  Q8L 37 
Q8L H9  H9  H 0 1 N N N -30.332 4.454  15.510 -1.272 4.521  -1.315 H9  Q8L 38 
Q8L H10 H10 H 0 1 N N N -28.825 0.904  11.145 2.395  3.160  0.835  H10 Q8L 39 
Q8L H11 H11 H 0 1 N N N -27.329 1.726  10.586 2.602  2.376  -0.749 H11 Q8L 40 
Q8L H12 H12 H 0 1 N N N -33.839 -4.089 15.983 -8.735 -1.891 -0.382 H12 Q8L 41 
Q8L H13 H13 H 0 1 N N N -36.092 -1.369 14.337 -5.611 -1.706 -1.208 H13 Q8L 42 
Q8L H14 H14 H 0 1 N N N -36.366 -0.810 16.579 -7.818 -1.378 -2.061 H14 Q8L 43 
Q8L H15 H15 H 0 1 N N N -28.642 0.480  8.480  4.045  0.440  -0.998 H15 Q8L 44 
Q8L H16 H16 H 0 1 N N N -30.885 3.372  6.279  6.732  -0.455 2.193  H16 Q8L 45 
Q8L H17 H17 H 0 1 N N N -30.858 4.869  8.242  5.506  1.097  3.660  H17 Q8L 46 
Q8L H18 H18 H 0 1 N N N -29.732 4.179  10.313 3.554  2.324  2.797  H18 Q8L 47 
Q8L H19 H19 H 0 1 N N N -27.649 2.785  12.389 1.331  0.549  0.990  H19 Q8L 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Q8L I   C14 SING N N 1  
Q8L C15 C14 DOUB Y N 2  
Q8L C15 C16 SING Y N 3  
Q8L C14 C13 SING Y N 4  
Q8L C16 C17 DOUB Y N 5  
Q8L C13 C12 DOUB Y N 6  
Q8L C17 C12 SING Y N 7  
Q8L C12 C11 SING N N 8  
Q8L C11 N5  SING N N 9  
Q8L N5  C10 SING N N 10 
Q8L N2  C6  DOUB Y N 11 
Q8L N2  C7  SING Y N 12 
Q8L C6  N1  SING Y N 13 
Q8L C10 C7  DOUB Y N 14 
Q8L C10 N4  SING Y N 15 
Q8L C7  C8  SING Y N 16 
Q8L O2  C3  DOUB N N 17 
Q8L N1  C8  SING Y N 18 
Q8L N1  C5  SING N N 19 
Q8L N4  C9  DOUB Y N 20 
Q8L O1  C1  SING N N 21 
Q8L C1  C5  SING N N 22 
Q8L C1  C   SING N N 23 
Q8L C8  N3  DOUB Y N 24 
Q8L C4  N   SING N N 25 
Q8L C3  N   SING N N 26 
Q8L C3  C2  SING N N 27 
Q8L C5  O3  SING N N 28 
Q8L C9  N3  SING Y N 29 
Q8L C   C2  SING N N 30 
Q8L C   O   SING N N 31 
Q8L O3  C2  SING N N 32 
Q8L O1  H1  SING N N 33 
Q8L C2  H2  SING N N 34 
Q8L C4  H3  SING N N 35 
Q8L C4  H4  SING N N 36 
Q8L C4  H5  SING N N 37 
Q8L C5  H6  SING N N 38 
Q8L C6  H7  SING N N 39 
Q8L C1  H8  SING N N 40 
Q8L C9  H9  SING N N 41 
Q8L C11 H10 SING N N 42 
Q8L C11 H11 SING N N 43 
Q8L N   H12 SING N N 44 
Q8L C   H13 SING N N 45 
Q8L O   H14 SING N N 46 
Q8L C13 H15 SING N N 47 
Q8L C15 H16 SING N N 48 
Q8L C16 H17 SING N N 49 
Q8L C17 H18 SING N N 50 
Q8L N5  H19 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Q8L SMILES           ACDLabs              12.01 "Ic1cccc(c1)CNc1ncnc2c1ncn2C1OC(C(O)C1O)C(=O)NC"                                                                                                                                               
Q8L InChI            InChI                1.03  "InChI=1S/C18H19IN6O4/c1-20-17(28)14-12(26)13(27)18(29-14)25-8-24-11-15(22-7-23-16(11)25)21-6-9-3-2-4-10(19)5-9/h2-5,7-8,12-14,18,26-27H,6H2,1H3,(H,20,28)(H,21,22,23)/t12-,13+,14-,18+/m0/s1" 
Q8L InChIKey         InChI                1.03  HUJXGQILHAUCCV-MOROJQBDSA-N                                                                                                                                                                    
Q8L SMILES_CANONICAL CACTVS               3.385 "CNC(=O)[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(NCc4cccc(I)c4)ncnc23"                                                                                                                            
Q8L SMILES           CACTVS               3.385 "CNC(=O)[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(NCc4cccc(I)c4)ncnc23"                                                                                                                                 
Q8L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3NCc4cccc(c4)I)O)O"                                                                                                                           
Q8L SMILES           "OpenEye OEToolkits" 2.0.7 "CNC(=O)C1C(C(C(O1)n2cnc3c2ncnc3NCc4cccc(c4)I)O)O"                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Q8L "SYSTEMATIC NAME" ACDLabs              12.01 "(2S,3S,4R,5R)-3,4-dihydroxy-5-(6-{[(3-iodophenyl)methyl]amino}-9H-purin-9-yl)-N-methyloxolane-2-carboxamide (non-preferred name)" 
Q8L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{S},4~{R},5~{R})-5-[6-[(3-iodanylphenyl)methylamino]purin-9-yl]-~{N}-methyl-3,4-bis(oxidanyl)oxolane-2-carboxamide"      
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Q8L "Create component" 2022-06-01 RCSB 
Q8L "Modify name"      2022-06-06 RCSB 
Q8L "Initial release"  2023-01-11 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      Q8L 
_pdbx_chem_comp_synonyms.name         "(2S,3S,4R,5R)-3,4-dihydroxy-5-(6-{[(3-iodophenyl)methyl]amino}-9H-purin-9-yl)-N-methyloxolane-2-carboxamide (non-preferred name)" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         IUPAC 
# 
