data_Q3L
# 
_chem_comp.id                                    Q3L 
_chem_comp.name                                  "(2~{S})-3-[2-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-[(1~{R},2~{R})-1-azanyl-2-oxidanyl-propyl]-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanyl-1~{H}-imidazol-5-yl]-2-(trimethyl-$l^{4}-azanyl)propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H31 N4 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2023-03-17 
_chem_comp.pdbx_modified_date                    2023-09-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        435.516 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Q3L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8ILA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Q3L O3  O1  O 0 1 N N N 18.332 22.572 23.924 -6.804 -0.180 0.444  O3  Q3L 1  
Q3L C16 C1  C 0 1 N N S 13.535 29.287 23.294 4.841  1.171  -0.280 C16 Q3L 2  
Q3L N4  N1  N 0 1 Y N N 18.803 26.795 24.833 -1.711 1.607  -0.126 N4  Q3L 3  
Q3L C3  C2  C 0 1 N N R 14.619 31.886 20.728 3.232  -2.315 -0.007 C3  Q3L 4  
Q3L N2  N2  N 0 1 Y N N 18.267 26.593 22.753 -0.257 0.424  -1.216 N2  Q3L 5  
Q3L C4  C3  C 0 1 N N R 14.576 30.646 21.462 3.382  -0.849 -0.420 C4  Q3L 6  
Q3L C5  C4  C 0 1 N N S 15.962 29.119 22.893 2.350  1.304  -0.198 C5  Q3L 7  
Q3L N3  N3  N 1 1 N N N 19.617 22.462 26.686 -4.307 -0.975 0.606  N3  Q3L 8  
Q3L C6  C5  C 0 1 Y N N 18.232 27.397 23.801 -0.384 1.355  -0.300 C6  Q3L 9  
Q3L C7  C6  C 0 1 Y N N 18.858 25.465 23.117 -1.474 0.054  -1.647 C7  Q3L 10 
Q3L C8  C7  C 0 1 Y N N 19.206 25.589 24.459 -2.395 0.773  -0.982 C8  Q3L 11 
Q3L C9  C8  C 0 1 N N N 19.917 24.542 25.346 -3.890 0.686  -1.145 C9  Q3L 12 
Q3L C1  C9  C 0 1 N N R 13.319 32.126 19.884 1.890  -2.852 -0.510 C1  Q3L 13 
Q3L N1  N4  N 0 1 N N N 14.882 33.062 21.603 4.325  -3.103 -0.591 N1  Q3L 14 
Q3L C2  C10 C 0 1 N N N 13.668 32.732 18.511 1.740  -4.317 -0.097 C2  Q3L 15 
Q3L C17 C11 C 0 1 N N R 13.503 30.596 22.594 4.724  -0.312 0.085  C17 Q3L 16 
Q3L O2  O2  O 0 1 N N N 15.932 30.370 22.111 2.319  -0.082 0.148  O2  Q3L 17 
Q3L C10 C12 C 0 1 N N S 18.926 23.591 26.033 -4.537 0.423  0.216  C10 Q3L 18 
Q3L C15 C13 C 0 1 N N R 14.836 29.003 23.870 3.650  1.928  0.317  C15 Q3L 19 
Q3L C14 C14 C 0 1 N N N 17.932 23.071 25.014 -6.019 0.682  0.126  C14 Q3L 20 
Q3L C13 C15 C 0 1 N N N 20.307 22.901 27.916 -5.009 -1.865 -0.328 C13 Q3L 21 
Q3L C12 C16 C 0 1 N N N 18.569 21.498 27.116 -2.867 -1.263 0.569  C12 Q3L 22 
Q3L C11 C17 C 0 1 N N N 20.666 21.996 25.745 -4.816 -1.194 1.967  C11 Q3L 23 
Q3L O1  O3  O 0 1 N N N 12.573 30.860 19.691 0.827  -2.085 0.058  O1  Q3L 24 
Q3L O4  O4  O 0 1 N N N 16.700 23.152 25.259 -6.468 1.871  -0.307 O4  Q3L 25 
Q3L O5  O5  O 0 1 N N N 14.831 27.621 24.413 3.709  3.300  -0.078 O5  Q3L 26 
Q3L O6  O6  O 0 1 N N N 12.531 29.312 24.388 6.057  1.700  0.252  O6  Q3L 27 
Q3L O7  O7  O 0 1 N N N 13.765 31.593 23.580 4.794  -0.461 1.505  O7  Q3L 28 
Q3L S1  S1  S 0 1 N N N 17.524 29.075 23.818 0.936  2.146  0.557  S1  Q3L 29 
Q3L H1  H1  H 0 1 N N N 13.268 28.493 22.581 4.838  1.283  -1.364 H1  Q3L 30 
Q3L H2  H2  H 0 1 N N N 18.912 27.187 25.747 -2.100 2.248  0.488  H2  Q3L 31 
Q3L H3  H3  H 0 1 N N N 15.448 31.823 20.008 3.269  -2.392 1.080  H3  Q3L 32 
Q3L H5  H5  H 0 1 N N N 14.361 29.823 20.764 3.345  -0.772 -1.507 H5  Q3L 33 
Q3L H6  H6  H 0 1 N N N 15.972 28.247 22.222 2.299  1.409  -1.281 H6  Q3L 34 
Q3L H7  H7  H 0 1 N N N 19.037 24.606 22.488 -1.679 -0.695 -2.398 H7  Q3L 35 
Q3L H8  H8  H 0 1 N N N 20.598 23.950 24.717 -4.266 1.625  -1.551 H8  Q3L 36 
Q3L H9  H9  H 0 1 N N N 20.496 25.068 26.119 -4.135 -0.128 -1.827 H9  Q3L 37 
Q3L H10 H10 H 0 1 N N N 12.685 32.841 20.429 1.853  -2.775 -1.597 H10 Q3L 38 
Q3L H11 H11 H 0 1 N N N 15.712 32.901 22.137 4.312  -3.048 -1.599 H11 Q3L 39 
Q3L H12 H12 H 0 1 N N N 15.003 33.878 21.037 5.218  -2.810 -0.224 H12 Q3L 40 
Q3L H14 H14 H 0 1 N N N 14.222 33.672 18.654 1.777  -4.394 0.989  H14 Q3L 41 
Q3L H15 H15 H 0 1 N N N 14.290 32.023 17.945 0.784  -4.699 -0.456 H15 Q3L 42 
Q3L H16 H16 H 0 1 N N N 12.742 32.934 17.953 2.551  -4.902 -0.531 H16 Q3L 43 
Q3L H17 H17 H 0 1 N N N 12.511 30.751 22.145 5.538  -0.867 -0.381 H17 Q3L 44 
Q3L H18 H18 H 0 1 N N N 18.376 24.162 26.796 -4.097 1.085  0.962  H18 Q3L 45 
Q3L H19 H19 H 0 1 N N N 15.021 29.703 24.698 3.682  1.859  1.404  H19 Q3L 46 
Q3L H20 H20 H 0 1 N N N 19.565 23.257 28.646 -4.704 -2.895 -0.147 H20 Q3L 47 
Q3L H21 H21 H 0 1 N N N 20.867 22.056 28.344 -6.085 -1.773 -0.179 H21 Q3L 48 
Q3L H22 H22 H 0 1 N N N 21.004 23.717 27.674 -4.760 -1.587 -1.352 H22 Q3L 49 
Q3L H23 H23 H 0 1 N N N 17.873 21.996 27.807 -2.535 -1.320 -0.468 H23 Q3L 50 
Q3L H24 H24 H 0 1 N N N 18.016 21.140 26.235 -2.325 -0.468 1.081  H24 Q3L 51 
Q3L H25 H25 H 0 1 N N N 19.042 20.645 27.624 -2.674 -2.214 1.065  H25 Q3L 52 
Q3L H26 H26 H 0 1 N N N 21.210 21.151 26.191 -4.584 -0.326 2.585  H26 Q3L 53 
Q3L H27 H27 H 0 1 N N N 20.197 21.674 24.804 -5.896 -1.337 1.932  H27 Q3L 54 
Q3L H28 H28 H 0 1 N N N 21.368 22.818 25.542 -4.344 -2.079 2.392  H28 Q3L 55 
Q3L H29 H29 H 0 1 N N N 12.358 30.486 20.538 0.799  -2.107 1.024  H29 Q3L 56 
Q3L H30 H30 H 0 1 N N N 16.207 22.797 24.528 -7.426 1.990  -0.347 H30 Q3L 57 
Q3L H31 H31 H 0 1 N N N 14.121 27.528 25.037 2.984  3.840  0.264  H31 Q3L 58 
Q3L H32 H32 H 0 1 N N N 12.540 28.480 24.846 6.193  2.639  0.064  H32 Q3L 59 
Q3L H33 H33 H 0 1 N N N 13.103 31.548 24.260 5.620  -0.141 1.893  H33 Q3L 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Q3L C2  C1  SING N N 1  
Q3L O1  C1  SING N N 2  
Q3L C1  C3  SING N N 3  
Q3L C3  C4  SING N N 4  
Q3L C3  N1  SING N N 5  
Q3L C4  O2  SING N N 6  
Q3L C4  C17 SING N N 7  
Q3L O2  C5  SING N N 8  
Q3L C17 C16 SING N N 9  
Q3L C17 O7  SING N N 10 
Q3L N2  C7  SING Y N 11 
Q3L N2  C6  DOUB Y N 12 
Q3L C5  S1  SING N N 13 
Q3L C5  C15 SING N N 14 
Q3L C7  C8  DOUB Y N 15 
Q3L C16 C15 SING N N 16 
Q3L C16 O6  SING N N 17 
Q3L C6  S1  SING N N 18 
Q3L C6  N4  SING Y N 19 
Q3L C15 O5  SING N N 20 
Q3L O3  C14 DOUB N N 21 
Q3L C8  N4  SING Y N 22 
Q3L C8  C9  SING N N 23 
Q3L C14 O4  SING N N 24 
Q3L C14 C10 SING N N 25 
Q3L C9  C10 SING N N 26 
Q3L C11 N3  SING N N 27 
Q3L C10 N3  SING N N 28 
Q3L N3  C12 SING N N 29 
Q3L N3  C13 SING N N 30 
Q3L C16 H1  SING N N 31 
Q3L N4  H2  SING N N 32 
Q3L C3  H3  SING N N 33 
Q3L C4  H5  SING N N 34 
Q3L C5  H6  SING N N 35 
Q3L C7  H7  SING N N 36 
Q3L C9  H8  SING N N 37 
Q3L C9  H9  SING N N 38 
Q3L C1  H10 SING N N 39 
Q3L N1  H11 SING N N 40 
Q3L N1  H12 SING N N 41 
Q3L C2  H14 SING N N 42 
Q3L C2  H15 SING N N 43 
Q3L C2  H16 SING N N 44 
Q3L C17 H17 SING N N 45 
Q3L C10 H18 SING N N 46 
Q3L C15 H19 SING N N 47 
Q3L C13 H20 SING N N 48 
Q3L C13 H21 SING N N 49 
Q3L C13 H22 SING N N 50 
Q3L C12 H23 SING N N 51 
Q3L C12 H24 SING N N 52 
Q3L C12 H25 SING N N 53 
Q3L C11 H26 SING N N 54 
Q3L C11 H27 SING N N 55 
Q3L C11 H28 SING N N 56 
Q3L O1  H29 SING N N 57 
Q3L O4  H30 SING N N 58 
Q3L O5  H31 SING N N 59 
Q3L O6  H32 SING N N 60 
Q3L O7  H33 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Q3L InChI            InChI                1.06  "InChI=1S/C17H30N4O7S/c1-7(22)10(18)14-12(24)11(23)13(25)16(28-14)29-17-19-6-8(20-17)5-9(15(26)27)21(2,3)4/h6-7,9-14,16,22-25H,5,18H2,1-4H3,(H-,19,20,26,27)/p+1/t7-,9+,10-,11+,12-,13-,14-,16+/m1/s1" 
Q3L InChIKey         InChI                1.06  MZDFOQLXMBUKGA-HNXDCMGUSA-O                                                                                                                                                                            
Q3L SMILES_CANONICAL CACTVS               3.385 "C[C@@H](O)[C@@H](N)[C@H]1O[C@@H](Sc2[nH]c(C[C@@H](C(O)=O)[N+](C)(C)C)cn2)[C@H](O)[C@@H](O)[C@H]1O"                                                                                                    
Q3L SMILES           CACTVS               3.385 "C[CH](O)[CH](N)[CH]1O[CH](Sc2[nH]c(C[CH](C(O)=O)[N+](C)(C)C)cn2)[CH](O)[CH](O)[CH]1O"                                                                                                                 
Q3L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@H]([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)Sc2[nH]c(cn2)C[C@@H](C(=O)O)[N+](C)(C)C)O)O)O)N)O"                                                                                                  
Q3L SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(C1C(C(C(C(O1)Sc2[nH]c(cn2)CC(C(=O)O)[N+](C)(C)C)O)O)O)N)O"                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           Q3L 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{S})-3-[2-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-[(1~{R},2~{R})-1-azanyl-2-oxidanyl-propyl]-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanyl-1~{H}-imidazol-5-yl]-1-oxidanyl-1-oxidanylidene-propan-2-yl]-trimethyl-azanium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Q3L "Create component" 2023-03-17 PDBJ 
Q3L "Initial release"  2023-09-20 RCSB 
# 
