data_O6L
# 
_chem_comp.id                                    O6L 
_chem_comp.name                                  "2-chloranyl-~{N}-[[1-[1-(4-chloranylphenoxy)cyclopentyl]carbonylpiperidin-4-yl]methyl]ethanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H26 Cl2 N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-30 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        413.338 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     O6L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8ATR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
O6L N1  N1  N  0 1 N N N N N N 20.682 24.157 -2.461 -4.582 0.612  -0.030 N1  O6L 1  
O6L C2  C1  C  0 1 N N N N N N 22.302 25.274 -3.893 -6.827 1.414  0.628  C2  O6L 2  
O6L C3  C2  C  0 1 N N N N N N 19.601 24.083 -1.482 -3.699 -0.284 -0.781 C3  O6L 3  
O6L C4  C3  C  0 1 N N N N N N 18.280 23.633 -2.089 -2.240 0.056  -0.468 C4  O6L 4  
O6L C5  C4  C  0 1 N N N N N N 18.409 22.231 -2.679 -1.955 -0.236 1.007  C5  O6L 5  
O6L C6  C5  C  0 1 N N N N N N 17.062 21.662 -3.086 -0.504 0.138  1.326  C6  O6L 6  
O6L C7  C6  C  0 1 N N N N N N 15.688 20.521 -1.413 1.399  -1.325 0.844  C7  O6L 7  
O6L C8  C7  C  0 1 N N N N N N 14.736 20.531 -0.197 2.368  -1.947 -0.128 C8  O6L 8  
O6L C9  C8  C  0 1 Y N N N N N 16.464 21.392 1.416  3.312  0.127  -0.807 C9  O6L 9  
O6L C10 C9  C  0 1 Y N N N N N 17.467 20.523 1.076  3.519  0.410  0.535  C10 O6L 10 
O6L C11 C10 C  0 1 Y N N N N N 18.750 20.724 1.565  4.157  1.579  0.902  C11 O6L 11 
O6L C12 C11 C  0 1 Y N N N N N 18.991 21.780 2.406  4.589  2.467  -0.067 C12 O6L 12 
O6L C13 C12 C  0 1 Y N N N N N 17.987 22.645 2.758  4.383  2.185  -1.406 C13 O6L 13 
O6L O1  O1  O  0 1 N N N N N N 20.314 26.309 -3.096 -6.392 -0.355 -0.871 O1  O6L 14 
O6L C1  C13 C  0 1 N N N N N N 21.004 25.271 -3.119 -5.919 0.493  -0.145 C1  O6L 15 
O6L N2  N2  N  0 1 N N N N N N 16.148 21.679 -1.933 0.382  -0.566 0.389  N2  O6L 16 
O6L O2  O2  O  0 1 N N N N N N 15.994 19.422 -1.880 1.533  -1.507 2.035  O2  O6L 17 
O6L O3  O3  O  0 1 N N N N N N 15.167 21.295 0.963  2.679  -1.020 -1.170 O3  O6L 18 
O6L CL2 CL1 CL 0 0 N N N N N N 20.597 22.050 3.019  5.391  3.935  0.397  CL2 O6L 19 
O6L C14 C14 C  0 1 Y N N N N N 16.711 22.436 2.265  3.746  1.018  -1.778 C14 O6L 20 
O6L C15 C15 C  0 1 N N N N N N 13.334 21.018 -0.633 3.657  -2.369 0.608  C15 O6L 21 
O6L C16 C16 C  0 1 N N N N N N 12.330 20.231 0.191  3.437  -3.868 0.930  C16 O6L 22 
O6L C17 C17 C  0 1 N N N N N N 13.132 19.279 1.058  2.706  -4.386 -0.333 C17 O6L 23 
O6L C18 C18 C  0 1 N N N N N N 14.453 19.114 0.333  1.764  -3.230 -0.726 C18 O6L 24 
O6L C19 C19 C  0 1 N N N N N N 15.890 23.053 -1.477 0.139  -0.426 -1.053 C19 O6L 25 
O6L C20 C20 C  0 1 N N N N N N 17.185 23.705 -1.026 -1.319 -0.794 -1.345 C20 O6L 26 
O6L H1  H1  H  0 1 N N N N N N 21.209 23.328 -2.648 -4.203 1.288  0.554  H1  O6L 27 
O6L H2  H2  H  0 1 N N N N N N 22.966 26.062 -3.507 -6.643 1.294  1.696  H2  O6L 28 
O6L H3  H3  H  0 1 N N N N N N 22.798 24.297 -3.796 -6.628 2.447  0.340  H3  O6L 29 
O6L H5  H5  H  0 1 N N N N N N 19.888 23.368 -0.697 -3.901 -1.316 -0.496 H5  O6L 30 
O6L H6  H6  H  0 1 N N N N N N 19.461 25.080 -1.038 -3.879 -0.159 -1.849 H6  O6L 31 
O6L H7  H7  H  0 1 N N N N N N 18.018 24.327 -2.902 -2.062 1.112  -0.670 H7  O6L 32 
O6L H8  H8  H  0 1 N N N N N N 18.862 21.569 -1.927 -2.628 0.353  1.631  H8  O6L 33 
O6L H9  H9  H  0 1 N N N N N N 19.058 22.277 -3.566 -2.110 -1.296 1.205  H9  O6L 34 
O6L H10 H10 H  0 1 N N N N N N 16.638 22.271 -3.898 -0.371 1.214  1.216  H10 O6L 35 
O6L H11 H11 H  0 1 N N N N N N 17.192 20.627 -3.434 -0.266 -0.159 2.347  H11 O6L 36 
O6L H12 H12 H  0 1 N N N N N N 17.260 19.684 0.429  3.182  -0.282 1.292  H12 O6L 37 
O6L H13 H13 H  0 1 N N N N N N 19.551 20.055 1.286  4.319  1.801  1.947  H13 O6L 38 
O6L H14 H14 H  0 1 N N N N N N 18.190 23.480 3.412  4.721  2.880  -2.162 H14 O6L 39 
O6L H15 H15 H  0 1 N N N N N N 15.908 23.099 2.551  3.586  0.798  -2.823 H15 O6L 40 
O6L H16 H16 H  0 1 N N N N N N 13.227 22.095 -0.436 4.524  -2.241 -0.039 H16 O6L 41 
O6L H17 H17 H  0 1 N N N N N N 13.181 20.825 -1.705 3.777  -1.795 1.526  H17 O6L 42 
O6L H18 H18 H  0 1 N N N N N N 11.739 20.912 0.821  4.391  -4.379 1.062  H18 O6L 43 
O6L H19 H19 H  0 1 N N N N N N 11.656 19.666 -0.470 2.809  -3.985 1.814  H19 O6L 44 
O6L H20 H20 H  0 1 N N N N N N 13.290 19.707 2.059  3.421  -4.584 -1.133 H20 O6L 45 
O6L H21 H21 H  0 1 N N N N N N 12.617 18.311 1.150  2.135  -5.285 -0.102 H21 O6L 46 
O6L H22 H22 H  0 1 N N N N N N 14.363 18.393 -0.493 0.770  -3.402 -0.314 H22 O6L 47 
O6L H23 H23 H  0 1 N N N N N N 15.244 18.784 1.023  1.709  -3.145 -1.812 H23 O6L 48 
O6L H24 H24 H  0 1 N N N N N N 15.458 23.636 -2.304 0.324  0.604  -1.357 H24 O6L 49 
O6L H25 H25 H  0 1 N N N N N N 15.182 23.030 -0.636 0.802  -1.096 -1.602 H25 O6L 50 
O6L H26 H26 H  0 1 N N N N N N 17.540 23.193 -0.119 -1.479 -1.849 -1.126 H26 O6L 51 
O6L H27 H27 H  0 1 N N N N N N 16.986 24.762 -0.796 -1.539 -0.603 -2.396 H27 O6L 52 
O6L CL1 CL2 CL 0 0 N Y N N N N 21.908 25.598 -5.642 -8.546 1.009  0.265  CL1 O6L 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
O6L C2  C1  SING N N 1  
O6L C1  O1  DOUB N N 2  
O6L C1  N1  SING N N 3  
O6L C6  C5  SING N N 4  
O6L C6  N2  SING N N 5  
O6L C5  C4  SING N N 6  
O6L N1  C3  SING N N 7  
O6L C4  C3  SING N N 8  
O6L C4  C20 SING N N 9  
O6L N2  C19 SING N N 10 
O6L N2  C7  SING N N 11 
O6L O2  C7  DOUB N N 12 
O6L C19 C20 SING N N 13 
O6L C7  C8  SING N N 14 
O6L C15 C8  SING N N 15 
O6L C15 C16 SING N N 16 
O6L C8  C18 SING N N 17 
O6L C8  O3  SING N N 18 
O6L C16 C17 SING N N 19 
O6L C18 C17 SING N N 20 
O6L O3  C9  SING N N 21 
O6L C10 C9  DOUB Y N 22 
O6L C10 C11 SING Y N 23 
O6L C9  C14 SING Y N 24 
O6L C11 C12 DOUB Y N 25 
O6L C14 C13 DOUB Y N 26 
O6L C12 C13 SING Y N 27 
O6L C12 CL2 SING N N 28 
O6L N1  H1  SING N N 29 
O6L C2  H2  SING N N 30 
O6L C2  H3  SING N N 31 
O6L C3  H5  SING N N 32 
O6L C3  H6  SING N N 33 
O6L C4  H7  SING N N 34 
O6L C5  H8  SING N N 35 
O6L C5  H9  SING N N 36 
O6L C6  H10 SING N N 37 
O6L C6  H11 SING N N 38 
O6L C10 H12 SING N N 39 
O6L C11 H13 SING N N 40 
O6L C13 H14 SING N N 41 
O6L C14 H15 SING N N 42 
O6L C15 H16 SING N N 43 
O6L C15 H17 SING N N 44 
O6L C16 H18 SING N N 45 
O6L C16 H19 SING N N 46 
O6L C17 H20 SING N N 47 
O6L C17 H21 SING N N 48 
O6L C18 H22 SING N N 49 
O6L C18 H23 SING N N 50 
O6L C19 H24 SING N N 51 
O6L C19 H25 SING N N 52 
O6L C20 H26 SING N N 53 
O6L C20 H27 SING N N 54 
O6L C2  CL1 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
O6L InChI            InChI                1.06    "InChI=1S/C20H26Cl2N2O3/c21-13-18(25)23-14-15-7-11-24(12-8-15)19(26)20(9-1-2-10-20)27-17-5-3-16(22)4-6-17/h3-6,15H,1-2,7-14H2,(H,23,25)" 
O6L InChIKey         InChI                1.06    ZLBLVMWFLKBHSC-UHFFFAOYSA-N                                                                                                              
O6L SMILES_CANONICAL CACTVS               3.385   "ClCC(=O)NCC1CCN(CC1)C(=O)C2(CCCC2)Oc3ccc(Cl)cc3"                                                                                        
O6L SMILES           CACTVS               3.385   "ClCC(=O)NCC1CCN(CC1)C(=O)C2(CCCC2)Oc3ccc(Cl)cc3"                                                                                        
O6L SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(ccc1OC2(CCCC2)C(=O)N3CCC(CC3)CNC(=O)CCl)Cl"                                                                                        
O6L SMILES           "OpenEye OEToolkits" 3.1.0.0 "c1cc(ccc1OC2(CCCC2)C(=O)N3CCC(CC3)CNC(=O)CCl)Cl"                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           O6L 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "2-chloranyl-~{N}-[[1-[1-(4-chloranylphenoxy)cyclopentyl]carbonylpiperidin-4-yl]methyl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
O6L "Create component" 2022-08-30 PDBE 
O6L "Initial release"  2023-09-20 RCSB 
O6L "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            O6L 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C2 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
