data_O3L
# 
_chem_comp.id                                    O3L 
_chem_comp.name                                  "(N-[([2,2'-bipyridin]-5-yl-kappa~2~N~1~,N~1'~)methyl]-3-{[(pyridin-3-yl)methyl]sulfanyl}propanamide)bis[2-(pyridin-2-yl-kappaN)phenyl-kappaC~1~]iridium" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C42 H36 Ir N6 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-20 
_chem_comp.pdbx_modified_date                    2022-08-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        865.057 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     O3L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        7UAZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
O3L C19  C1  C  0 1 Y N N -28.154 -9.987  -13.133 ? ? ? C19  O3L 1  
O3L C20  C2  C  0 1 Y N N -29.262 -11.059 -14.945 ? ? ? C20  O3L 2  
O3L C21  C3  C  0 1 Y N N -26.658 -11.398 -11.579 ? ? ? C21  O3L 3  
O3L C22  C4  C  0 1 Y N N -24.975 -11.855 -9.491  ? ? ? C22  O3L 4  
O3L C24  C5  C  0 1 Y N N -26.280 -10.325 -10.737 ? ? ? C24  O3L 5  
O3L C01  C6  C  0 1 Y N N -24.272 -12.883 -14.012 ? ? ? C01  O3L 6  
O3L C02  C7  C  0 1 Y N N -24.938 -13.807 -16.526 ? ? ? C02  O3L 7  
O3L C03  C8  C  0 1 Y N N -25.521 -13.570 -14.127 ? ? ? C03  O3L 8  
O3L C04  C9  C  0 1 Y N N -23.393 -12.665 -15.109 ? ? ? C04  O3L 9  
O3L C05  C10 C  0 1 Y N N -23.723 -13.122 -16.388 ? ? ? C05  O3L 10 
O3L C06  C11 C  0 1 Y N N -25.806 -14.038 -15.429 ? ? ? C06  O3L 11 
O3L C08  C12 C  0 1 Y N N -27.094 -14.754 -15.476 ? ? ? C08  O3L 12 
O3L C09  C13 C  0 1 Y N N -29.534 -16.049 -15.417 ? ? ? C09  O3L 13 
O3L C11  C14 C  0 1 Y N N -27.636 -15.293 -16.660 ? ? ? C11  O3L 14 
O3L C12  C15 C  0 1 Y N N -28.865 -15.942 -16.635 ? ? ? C12  O3L 15 
O3L C13  C16 C  0 1 Y N N -28.923 -15.480 -14.290 ? ? ? C13  O3L 16 
O3L C15  C17 C  0 1 Y N N -27.818 -12.414 -13.402 ? ? ? C15  O3L 17 
O3L C16  C18 C  0 1 Y N N -29.005 -9.886  -14.236 ? ? ? C16  O3L 18 
O3L C17  C19 C  0 1 Y N N -28.675 -12.284 -14.544 ? ? ? C17  O3L 19 
O3L C18  C20 C  0 1 Y N N -27.565 -11.206 -12.730 ? ? ? C18  O3L 20 
O3L C25  C21 C  0 1 Y N N -25.411 -10.531 -9.670  ? ? ? C25  O3L 21 
O3L C26  C22 C  0 1 Y N N -25.405 -12.885 -10.361 ? ? ? C26  O3L 22 
O3L C27  C23 C  0 1 Y N N -29.259 -17.223 -9.811  ? ? ? C27  O3L 23 
O3L C28  C24 C  0 1 Y N N -29.293 -15.260 -11.341 ? ? ? C28  O3L 24 
O3L C29  C25 C  0 1 Y N N -27.320 -16.229 -10.875 ? ? ? C29  O3L 25 
O3L C30  C26 C  0 1 Y N N -27.895 -17.198 -10.025 ? ? ? C30  O3L 26 
O3L C31  C27 C  0 1 Y N N -29.930 -16.224 -10.524 ? ? ? C31  O3L 27 
O3L C32  C28 C  0 1 Y N N -25.883 -16.235 -11.081 ? ? ? C32  O3L 28 
O3L C33  C29 C  0 1 Y N N -23.215 -16.074 -11.594 ? ? ? C33  O3L 29 
O3L C35  C30 C  0 1 Y N N -24.983 -17.152 -10.486 ? ? ? C35  O3L 30 
O3L C36  C31 C  0 1 Y N N -23.603 -17.101 -10.727 ? ? ? C36  O3L 31 
O3L C37  C32 C  0 1 Y N N -24.197 -15.228 -12.139 ? ? ? C37  O3L 32 
O3L C38  C33 C  0 1 N N N -21.754 -15.815 -12.033 ? ? ? C38  O3L 33 
O3L C40  C34 C  0 1 N N N -19.727 -16.534 -10.697 ? ? ? C40  O3L 34 
O3L C42  C35 C  0 1 N N N -18.906 -18.799 -9.917  ? ? ? C42  O3L 35 
O3L C45  C36 C  0 1 Y N N -19.781 -21.741 -9.830  ? ? ? C45  O3L 36 
O3L C47  C37 C  0 1 Y N N -18.426 -22.194 -9.852  ? ? ? C47  O3L 37 
O3L C49  C38 C  0 1 Y N N -18.685 -23.009 -12.000 ? ? ? C49  O3L 38 
O3L C50  C39 C  0 1 Y N N -20.048 -22.568 -12.045 ? ? ? C50  O3L 39 
O3L N10  N1  N  0 1 Y N N -27.697 -14.876 -14.280 ? ? ? N10  O3L 40 
O3L N14  N2  N  0 1 Y N N -27.954 -15.208 -11.536 ? ? ? N14  O3L 41 
O3L N23  N3  N  0 1 Y N N -26.252 -12.680 -11.402 ? ? ? N23  O3L 42 
O3L N34  N4  N  0 1 Y N N -25.534 -15.284 -11.945 ? ? ? N34  O3L 43 
O3L N39  N5  N  0 1 N N N -20.639 -15.473 -11.136 ? ? ? N39  O3L 44 
O3L IR07 IR1 IR 0 0 N N N -26.847 -14.017 -12.721 ? ? ? IR07 O3L 45 
O3L C41  C40 C  0 1 N N N -19.703 -18.035 -10.971 ? ? ? C41  O3L 46 
O3L C44  C41 C  0 1 N N N -20.144 -21.017 -8.516  ? ? ? C44  O3L 47 
O3L C51  C42 C  0 1 Y N N -20.622 -21.917 -10.946 ? ? ? C51  O3L 48 
O3L N48  N6  N  0 1 Y N N -17.908 -22.825 -10.917 ? ? ? N48  O3L 49 
O3L O46  O1  O  0 1 N N N -18.832 -16.192 -9.962  ? ? ? O46  O3L 50 
O3L S43  S1  S  0 1 N N N -19.735 -19.347 -8.512  ? ? ? S43  O3L 51 
O3L H1   H1  H  0 1 N N N -27.937 -9.095  -12.564 ? ? ? H1   O3L 52 
O3L H2   H2  H  0 1 N N N -29.913 -11.033 -15.806 ? ? ? H2   O3L 53 
O3L H3   H3  H  0 1 N N N -24.303 -12.089 -8.679  ? ? ? H3   O3L 54 
O3L H4   H4  H  0 1 N N N -26.670 -9.336  -10.925 ? ? ? H4   O3L 55 
O3L H5   H5  H  0 1 N N N -23.981 -12.510 -13.041 ? ? ? H5   O3L 56 
O3L H6   H6  H  0 1 N N N -25.223 -14.172 -17.502 ? ? ? H6   O3L 57 
O3L H7   H7  H  0 1 N N N -22.462 -12.141 -14.952 ? ? ? H7   O3L 58 
O3L H8   H8  H  0 1 N N N -23.071 -12.955 -17.232 ? ? ? H8   O3L 59 
O3L H9   H9  H  0 1 N N N -30.487 -16.551 -15.344 ? ? ? H9   O3L 60 
O3L H10  H10 H  0 1 N N N -27.095 -15.201 -17.590 ? ? ? H10  O3L 61 
O3L H11  H11 H  0 1 N N N -29.291 -16.354 -17.538 ? ? ? H11  O3L 62 
O3L H12  H12 H  0 1 N N N -29.464 -15.523 -13.356 ? ? ? H12  O3L 63 
O3L H13  H13 H  0 1 N N N -29.444 -8.943  -14.526 ? ? ? H13  O3L 64 
O3L H14  H14 H  0 1 N N N -28.884 -13.167 -15.130 ? ? ? H14  O3L 65 
O3L H15  H15 H  0 1 N N N -25.093 -9.727  -9.023  ? ? ? H15  O3L 66 
O3L H16  H16 H  0 1 N N N -25.040 -13.887 -10.188 ? ? ? H16  O3L 67 
O3L H17  H17 H  0 1 N N N -29.753 -17.934 -9.165  ? ? ? H17  O3L 68 
O3L H18  H18 H  0 1 N N N -29.909 -14.525 -11.837 ? ? ? H18  O3L 69 
O3L H19  H19 H  0 1 N N N -27.263 -17.926 -9.538  ? ? ? H19  O3L 70 
O3L H20  H20 H  0 1 N N N -31.006 -16.186 -10.446 ? ? ? H20  O3L 71 
O3L H21  H21 H  0 1 N N N -25.372 -17.914 -9.826  ? ? ? H21  O3L 72 
O3L H22  H22 H  0 1 N N N -22.902 -17.793 -10.283 ? ? ? H22  O3L 73 
O3L H23  H23 H  0 1 N N N -23.842 -14.442 -12.788 ? ? ? H23  O3L 74 
O3L H24  H24 H  0 1 N N N -21.439 -16.733 -12.551 ? ? ? H24  O3L 75 
O3L H25  H25 H  0 1 N N N -21.810 -14.987 -12.755 ? ? ? H25  O3L 76 
O3L H26  H26 H  0 1 N N N -18.478 -19.684 -10.410 ? ? ? H26  O3L 77 
O3L H27  H27 H  0 1 N N N -18.094 -18.138 -9.580  ? ? ? H27  O3L 78 
O3L H28  H28 H  0 1 N N N -17.801 -22.024 -8.988  ? ? ? H28  O3L 79 
O3L H29  H29 H  0 1 N N N -18.268 -23.505 -12.864 ? ? ? H29  O3L 80 
O3L H30  H30 H  0 1 N N N -20.637 -22.739 -12.934 ? ? ? H30  O3L 81 
O3L H31  H31 H  0 1 N N N -20.505 -14.530 -10.830 ? ? ? H31  O3L 82 
O3L H32  H32 H  0 1 N N N -20.737 -18.411 -10.976 ? ? ? H32  O3L 83 
O3L H33  H33 H  0 1 N N N -19.245 -18.208 -11.956 ? ? ? H33  O3L 84 
O3L H34  H34 H  0 1 N N N -21.228 -21.109 -8.357  ? ? ? H34  O3L 85 
O3L H35  H35 H  0 1 N N N -19.609 -21.508 -7.690  ? ? ? H35  O3L 86 
O3L H36  H36 H  0 1 N N N -21.645 -21.572 -10.954 ? ? ? H36  O3L 87 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
O3L C11  C12  DOUB Y N 1  
O3L C11  C08  SING Y N 2  
O3L C12  C09  SING Y N 3  
O3L C02  C05  DOUB Y N 4  
O3L C02  C06  SING Y N 5  
O3L C05  C04  SING Y N 6  
O3L C08  C06  SING N N 7  
O3L C08  N10  DOUB Y N 8  
O3L C06  C03  DOUB Y N 9  
O3L C09  C13  DOUB Y N 10 
O3L C04  C01  DOUB Y N 11 
O3L C20  C17  DOUB Y N 12 
O3L C20  C16  SING Y N 13 
O3L C17  C15  SING Y N 14 
O3L C13  N10  SING Y N 15 
O3L N10  IR07 SING N N 16 
O3L C16  C19  DOUB Y N 17 
O3L C03  C01  SING Y N 18 
O3L C03  IR07 SING N N 19 
O3L C15  C18  DOUB Y N 20 
O3L C15  IR07 SING N N 21 
O3L C19  C18  SING Y N 22 
O3L C18  C21  SING N N 23 
O3L IR07 N34  SING N N 24 
O3L IR07 N14  SING N N 25 
O3L IR07 N23  SING N N 26 
O3L C37  N34  DOUB Y N 27 
O3L C37  C33  SING Y N 28 
O3L C50  C49  DOUB Y N 29 
O3L C50  C51  SING Y N 30 
O3L C38  C33  SING N N 31 
O3L C38  N39  SING N N 32 
O3L C49  N48  SING Y N 33 
O3L N34  C32  SING Y N 34 
O3L C33  C36  DOUB Y N 35 
O3L C21  N23  DOUB Y N 36 
O3L C21  C24  SING Y N 37 
O3L N14  C28  DOUB Y N 38 
O3L N14  C29  SING Y N 39 
O3L N23  C26  SING Y N 40 
O3L C28  C31  SING Y N 41 
O3L N39  C40  SING N N 42 
O3L C32  C29  SING N N 43 
O3L C32  C35  DOUB Y N 44 
O3L C41  C40  SING N N 45 
O3L C41  C42  SING N N 46 
O3L C51  C45  DOUB Y N 47 
O3L N48  C47  DOUB Y N 48 
O3L C29  C30  DOUB Y N 49 
O3L C24  C25  DOUB Y N 50 
O3L C36  C35  SING Y N 51 
O3L C40  O46  DOUB N N 52 
O3L C31  C27  DOUB Y N 53 
O3L C26  C22  DOUB Y N 54 
O3L C30  C27  SING Y N 55 
O3L C42  S43  SING N N 56 
O3L C47  C45  SING Y N 57 
O3L C45  C44  SING N N 58 
O3L C25  C22  SING Y N 59 
O3L C44  S43  SING N N 60 
O3L C19  H1   SING N N 61 
O3L C20  H2   SING N N 62 
O3L C22  H3   SING N N 63 
O3L C24  H4   SING N N 64 
O3L C01  H5   SING N N 65 
O3L C02  H6   SING N N 66 
O3L C04  H7   SING N N 67 
O3L C05  H8   SING N N 68 
O3L C09  H9   SING N N 69 
O3L C11  H10  SING N N 70 
O3L C12  H11  SING N N 71 
O3L C13  H12  SING N N 72 
O3L C16  H13  SING N N 73 
O3L C17  H14  SING N N 74 
O3L C25  H15  SING N N 75 
O3L C26  H16  SING N N 76 
O3L C27  H17  SING N N 77 
O3L C28  H18  SING N N 78 
O3L C30  H19  SING N N 79 
O3L C31  H20  SING N N 80 
O3L C35  H21  SING N N 81 
O3L C36  H22  SING N N 82 
O3L C37  H23  SING N N 83 
O3L C38  H24  SING N N 84 
O3L C38  H25  SING N N 85 
O3L C42  H26  SING N N 86 
O3L C42  H27  SING N N 87 
O3L C47  H28  SING N N 88 
O3L C49  H29  SING N N 89 
O3L C50  H30  SING N N 90 
O3L N39  H31  SING N N 91 
O3L C41  H32  SING N N 92 
O3L C41  H33  SING N N 93 
O3L C44  H34  SING N N 94 
O3L C44  H35  SING N N 95 
O3L C51  H36  SING N N 96 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
O3L SMILES           ACDLabs              12.01 "O=C(NCc1ccc2c3ccccn3[Ir]34(c5ccccc5c5ccccn53)(c3ccccc3c3ccccn34)n2c1)CCSCc1cccnc1"                                                                                                                    
O3L InChI            InChI                1.06  "InChI=1S/C20H20N4OS.2C11H8N.Ir/c25-20(8-11-26-15-17-4-3-9-21-12-17)24-14-16-6-7-19(23-13-16)18-5-1-2-10-22-18;2*1-2-6-10(7-3-1)11-8-4-5-9-12-11;/h1-7,9-10,12-13H,8,11,14-15H2,(H,24,25);2*1-6,8-9H;" 
O3L InChIKey         InChI                1.06  QMZANNRXXNOPDT-UHFFFAOYSA-N                                                                                                                                                                            
O3L SMILES_CANONICAL CACTVS               3.385 "O=C(CCSCc1cccnc1)NCc2ccc(nc2)c3ccccn3.[Ir](c4ccccc4c5ccccn5)c6ccccc6c7ccccn7"                                                                                                                         
O3L SMILES           CACTVS               3.385 "O=C(CCSCc1cccnc1)NCc2ccc(nc2)c3ccccn3.[Ir](c4ccccc4c5ccccn5)c6ccccc6c7ccccn7"                                                                                                                         
O3L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C3=[N]([Ir]245(c6ccccc6C7=[N]4C=CC=C7)[N]8=CC=CC=C8C9=CC=C(C=[N]59)CNC(=O)CCSCc1cccnc1)C=CC=C3"                                                                                            
O3L SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C3=[N]([Ir]245(c6ccccc6C7=[N]4C=CC=C7)[N]8=CC=CC=C8C9=CC=C(C=[N]59)CNC(=O)CCSCc1cccnc1)C=CC=C3"                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           O3L 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           ACDLabs 
_pdbx_chem_comp_identifier.program_version   12.01 
_pdbx_chem_comp_identifier.identifier        "(N-[([2,2'-bipyridin]-5-yl-kappa~2~N~1~,N~1'~)methyl]-3-{[(pyridin-3-yl)methyl]sulfanyl}propanamide)bis[2-(pyridin-2-yl-kappaN)phenyl-kappaC~1~]iridium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
O3L "Create component"   2022-04-20 RCSB 
O3L "Modify coordinates" 2022-08-19 RCSB 
O3L "Initial release"    2022-08-31 RCSB 
# 
