data_NTL
#

_chem_comp.id                                   NTL
_chem_comp.name                                 
;N-[(2S,3R)-2-{[(1R,2S,3S,4R,6S)-6-amino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-lyxopyranosyl]oxy}-4-(ethylamino)
-2-hydroxycyclohexyl]oxy}-6-(aminomethyl)-3,4-dihydro-2H-pyran-3-yl]acetamide
;

_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H43 N5 O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        acetylated-netilmicin
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-02-07
_chem_comp.pdbx_modified_date                   2021-05-28
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       517.616
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NTL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6VR3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NTL  C01  C1   C  0  1  N  N  N  53.288  46.248  149.921   3.606   5.695   0.315  C01  NTL   1  
NTL  C02  C2   C  0  1  N  N  N  53.831  46.489  151.345   2.437   4.972  -0.356  C02  NTL   2  
NTL  C04  C3   C  0  1  N  N  R  55.911  46.345  152.804   1.065   2.978  -0.280  C04  NTL   3  
NTL  C05  C4   C  0  1  N  N  N  55.317  45.199  153.659  -0.255   3.485   0.303  C05  NTL   4  
NTL  C06  C5   C  0  1  N  N  S  55.815  45.099  155.132  -1.420   2.731  -0.341  C06  NTL   5  
NTL  C08  C6   C  0  1  N  N  R  55.673  46.476  155.896  -1.278   1.234  -0.057  C08  NTL   6  
NTL  C10  C7   C  0  1  N  N  S  55.775  47.308  158.180  -2.863  -0.555   0.129  C10  NTL   7  
NTL  C12  C8   C  0  1  N  N  N  53.469  46.868  158.694  -4.338  -0.913   1.962  C12  NTL   8  
NTL  C13  C9   C  0  1  N  N  N  52.010  47.185  158.244  -4.788  -0.511   3.343  C13  NTL   9  
NTL  C15  C10  C  0  1  N  N  N  53.859  45.696  159.125  -4.700  -2.084   1.508  C15  NTL  10  
NTL  C16  C11  C  0  1  N  N  N  55.195  45.463  159.773  -4.295  -2.584   0.148  C16  NTL  11  
NTL  C17  C12  C  0  1  N  N  R  56.128  46.702  159.574  -3.827  -1.405  -0.710  C17  NTL  12  
NTL  C19  C13  C  0  1  N  N  N  58.220  46.522  160.942  -5.682  -0.917  -2.214  C19  NTL  13  
NTL  C20  C14  C  0  1  N  N  N  59.727  46.281  161.121  -6.869  -0.084  -2.624  C20  NTL  14  
NTL  C22  C15  C  0  1  N  N  S  56.347  47.654  155.012   0.042   0.727  -0.640  C22  NTL  15  
NTL  C24  C16  C  0  1  N  N  S  55.719  47.746  153.537   1.207   1.481   0.004  C24  NTL  16  
NTL  C26  C17  C  0  1  N  N  R  55.613  49.900  152.445   3.010  -0.090   0.175  C26  NTL  17  
NTL  C28  C18  C  0  1  N  N  N  57.348  51.416  153.091   2.677  -2.413   0.671  C28  NTL  18  
NTL  C29  C19  C  0  1  N  N  R  57.611  52.095  151.733   4.084  -2.768   0.181  C29  NTL  19  
NTL  C30  C20  C  0  1  N  N  N  59.076  52.270  151.477   4.034  -3.115  -1.309  C30  NTL  20  
NTL  C32  C21  C  0  1  N  N  S  57.007  51.235  150.483   5.009  -1.567   0.396  C32  NTL  21  
NTL  C34  C22  C  0  1  N  N  N  58.687  49.286  150.017   7.374  -1.061   0.521  C34  NTL  22  
NTL  C35  C23  C  0  1  N  N  R  55.738  50.273  150.860   4.429  -0.352  -0.335  C35  NTL  23  
NTL  N03  N1   N  0  1  N  N  N  55.308  46.359  151.438   2.184   3.702   0.338  N03  NTL  24  
NTL  N07  N2   N  0  1  N  N  N  55.079  44.020  155.873  -2.688   3.217   0.220  N07  NTL  25  
NTL  N14  N3   N  0  1  N  N  N  51.686  47.180  156.804  -3.618  -0.379   4.221  N14  NTL  26  
NTL  N18  N4   N  0  1  N  N  N  57.557  46.502  159.727  -4.981  -0.594  -1.109  N18  NTL  27  
NTL  N33  N5   N  0  1  N  N  N  58.031  50.544  149.539   6.343  -1.872  -0.141  N33  NTL  28  
NTL  O09  O1   O  0  1  N  N  N  56.269  46.355  157.207  -2.366   0.530  -0.658  O09  NTL  29  
NTL  O11  O2   O  0  1  N  N  N  54.430  47.788  158.156  -3.580  -0.045   1.256  O11  NTL  30  
NTL  O21  O3   O  0  1  N  N  N  57.550  46.760  161.948  -5.357  -1.879  -2.878  O21  NTL  31  
NTL  O23  O4   O  0  1  N  N  N  56.071  48.892  155.590   0.175  -0.671  -0.375  O23  NTL  32  
NTL  O25  O5   O  0  1  N  N  N  56.350  48.756  152.822   2.441   1.008  -0.541  O25  NTL  33  
NTL  O27  O6   O  0  1  N  N  N  56.038  50.952  153.225   2.209  -1.257  -0.026  O27  NTL  34  
NTL  O31  O7   O  0  1  N  N  N  57.023  53.350  151.618   4.576  -3.890   0.916  O31  NTL  35  
NTL  O36  O8   O  0  1  N  N  N  55.773  49.055  150.170   4.391  -0.612  -1.739  O36  NTL  36  
NTL  H1   H1   H  0  1  N  N  N  52.194  46.359  149.922   3.360   5.894   1.359  H1   NTL  37  
NTL  H2   H2   H  0  1  N  N  N  53.730  46.982  149.231   4.497   5.070   0.266  H2   NTL  38  
NTL  H3   H3   H  0  1  N  N  N  53.553  45.232  149.595   3.794   6.638  -0.199  H3   NTL  39  
NTL  H4   H4   H  0  1  N  N  N  53.549  47.505  151.659   1.546   5.597  -0.306  H4   NTL  40  
NTL  H5   H5   H  0  1  N  N  N  53.372  45.754  152.023   2.684   4.773  -1.399  H5   NTL  41  
NTL  H6   H6   H  0  1  N  N  N  56.993  46.170  152.708   1.075   3.146  -1.357  H6   NTL  42  
NTL  H7   H7   H  0  1  N  N  N  54.225  45.332  153.684  -0.265   3.317   1.380  H7   NTL  43  
NTL  H8   H8   H  0  1  N  N  N  55.559  44.249  153.159  -0.356   4.551   0.101  H8   NTL  44  
NTL  H9   H9   H  0  1  N  N  N  56.884  44.841  155.109  -1.411   2.899  -1.418  H9   NTL  45  
NTL  H10  H10  H  0  1  N  N  N  54.601  46.704  155.993  -1.288   1.066   1.020  H10  NTL  46  
NTL  H11  H11  H  0  1  N  N  N  56.419  48.195  158.088  -2.031  -1.172   0.470  H11  NTL  47  
NTL  H13  H13  H  0  1  N  N  N  51.766  48.188  158.625  -5.312   0.444   3.290  H13  NTL  48  
NTL  H14  H14  H  0  1  N  N  N  51.356  46.441  158.724  -5.458  -1.272   3.742  H14  NTL  49  
NTL  H15  H15  H  0  1  N  N  N  53.190  44.856  159.010  -5.313  -2.717   2.133  H15  NTL  50  
NTL  H17  H17  H  0  1  N  N  N  55.049  45.290  160.849  -3.483  -3.304   0.253  H17  NTL  51  
NTL  H18  H18  H  0  1  N  N  N  55.667  44.579  159.320  -5.148  -3.066  -0.330  H18  NTL  52  
NTL  H19  H19  H  0  1  N  N  N  55.815  47.446  160.322  -3.314  -1.775  -1.598  H19  NTL  53  
NTL  H20  H20  H  0  1  N  N  N  59.988  46.364  162.186  -7.770  -0.481  -2.157  H20  NTL  54  
NTL  H21  H21  H  0  1  N  N  N  59.983  45.275  160.758  -6.717   0.947  -2.302  H21  NTL  55  
NTL  H22  H22  H  0  1  N  N  N  60.289  47.032  160.546  -6.977  -0.114  -3.708  H22  NTL  56  
NTL  H23  H23  H  0  1  N  N  N  57.428  47.466  154.932   0.052   0.895  -1.717  H23  NTL  57  
NTL  H24  H24  H  0  1  N  N  N  54.641  47.942  153.634   1.198   1.313   1.081  H24  NTL  58  
NTL  H25  H25  H  0  1  N  N  N  54.545  49.714  152.634   3.043   0.148   1.239  H25  NTL  59  
NTL  H26  H26  H  0  1  N  N  N  58.034  50.563  153.195   2.004  -3.249   0.481  H26  NTL  60  
NTL  H27  H27  H  0  1  N  N  N  57.545  52.145  153.891   2.707  -2.205   1.740  H27  NTL  61  
NTL  H28  H28  H  0  1  N  N  N  59.526  52.847  152.298   3.501  -2.331  -1.847  H28  NTL  62  
NTL  H29  H29  H  0  1  N  N  N  59.558  51.283  151.415   5.049  -3.197  -1.697  H29  NTL  63  
NTL  H30  H30  H  0  1  N  N  N  59.221  52.808  150.529   3.515  -4.064  -1.443  H30  NTL  64  
NTL  H31  H31  H  0  1  N  N  N  56.550  52.009  149.849   5.084  -1.350   1.461  H31  NTL  65  
NTL  H32  H32  H  0  1  N  N  N  59.380  48.918  149.246   7.165  -0.004   0.358  H32  NTL  66  
NTL  H33  H33  H  0  1  N  N  N  59.244  49.492  150.943   7.371  -1.272   1.590  H33  NTL  67  
NTL  H34  H34  H  0  1  N  N  N  57.919  48.524  150.214   8.351  -1.307   0.105  H34  NTL  68  
NTL  H35  H35  H  0  1  N  N  N  54.827  50.827  150.590   5.052   0.521  -0.141  H35  NTL  69  
NTL  H36  H36  H  0  1  N  N  N  55.563  45.503  150.989   3.015   3.131   0.362  H36  NTL  70  
NTL  H38  H38  H  0  1  N  N  N  55.414  43.973  156.814  -2.805   4.204   0.045  H38  NTL  71  
NTL  H39  H39  H  0  1  N  N  N  54.101  44.227  155.877  -3.469   2.691  -0.142  H39  NTL  72  
NTL  H41  H41  H  0  1  N  N  N  50.719  47.400  156.679  -2.951   0.274   3.838  H41  NTL  73  
NTL  H42  H42  H  0  1  N  N  N  52.246  47.862  156.334  -3.894  -0.109   5.153  H42  NTL  74  
NTL  H44  H44  H  0  1  N  N  N  58.098  46.339  158.902  -5.240   0.175  -0.577  H44  NTL  75  
NTL  H45  H45  H  0  1  N  N  N  58.757  51.206  149.352   6.368  -1.743  -1.141  H45  NTL  76  
NTL  H47  H47  H  0  1  N  N  N  56.416  48.913  156.475  -0.478  -1.221  -0.828  H47  NTL  77  
NTL  H48  H48  H  0  1  N  N  N  57.332  53.910  152.320   4.035  -4.686   0.829  H48  NTL  78  
NTL  H49  H49  H  0  1  N  N  N  55.022  48.529  150.417   4.034   0.117  -2.265  H49  NTL  79  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NTL  N33  C34  SING  N  N   1  
NTL  N33  C32  SING  N  N   2  
NTL  C01  C02  SING  N  N   3  
NTL  O36  C35  SING  N  N   4  
NTL  C32  C35  SING  N  N   5  
NTL  C32  C29  SING  N  N   6  
NTL  C35  C26  SING  N  N   7  
NTL  C02  N03  SING  N  N   8  
NTL  N03  C04  SING  N  N   9  
NTL  C30  C29  SING  N  N  10  
NTL  O31  C29  SING  N  N  11  
NTL  C29  C28  SING  N  N  12  
NTL  C26  O25  SING  N  N  13  
NTL  C26  O27  SING  N  N  14  
NTL  C04  C24  SING  N  N  15  
NTL  C04  C05  SING  N  N  16  
NTL  O25  C24  SING  N  N  17  
NTL  C28  O27  SING  N  N  18  
NTL  C24  C22  SING  N  N  19  
NTL  C05  C06  SING  N  N  20  
NTL  C22  O23  SING  N  N  21  
NTL  C22  C08  SING  N  N  22  
NTL  C06  N07  SING  N  N  23  
NTL  C06  C08  SING  N  N  24  
NTL  C08  O09  SING  N  N  25  
NTL  N14  C13  SING  N  N  26  
NTL  O09  C10  SING  N  N  27  
NTL  O11  C10  SING  N  N  28  
NTL  O11  C12  SING  N  N  29  
NTL  C10  C17  SING  N  N  30  
NTL  C13  C12  SING  N  N  31  
NTL  C12  C15  DOUB  N  N  32  
NTL  C15  C16  SING  N  N  33  
NTL  C17  N18  SING  N  N  34  
NTL  C17  C16  SING  N  N  35  
NTL  N18  C19  SING  N  N  36  
NTL  C19  C20  SING  N  N  37  
NTL  C19  O21  DOUB  N  N  38  
NTL  C01  H1   SING  N  N  39  
NTL  C01  H2   SING  N  N  40  
NTL  C01  H3   SING  N  N  41  
NTL  C02  H4   SING  N  N  42  
NTL  C02  H5   SING  N  N  43  
NTL  C04  H6   SING  N  N  44  
NTL  C05  H7   SING  N  N  45  
NTL  C05  H8   SING  N  N  46  
NTL  C06  H9   SING  N  N  47  
NTL  C08  H10  SING  N  N  48  
NTL  C10  H11  SING  N  N  49  
NTL  C13  H13  SING  N  N  50  
NTL  C13  H14  SING  N  N  51  
NTL  C15  H15  SING  N  N  52  
NTL  C16  H17  SING  N  N  53  
NTL  C16  H18  SING  N  N  54  
NTL  C17  H19  SING  N  N  55  
NTL  C20  H20  SING  N  N  56  
NTL  C20  H21  SING  N  N  57  
NTL  C20  H22  SING  N  N  58  
NTL  C22  H23  SING  N  N  59  
NTL  C24  H24  SING  N  N  60  
NTL  C26  H25  SING  N  N  61  
NTL  C28  H26  SING  N  N  62  
NTL  C28  H27  SING  N  N  63  
NTL  C30  H28  SING  N  N  64  
NTL  C30  H29  SING  N  N  65  
NTL  C30  H30  SING  N  N  66  
NTL  C32  H31  SING  N  N  67  
NTL  C34  H32  SING  N  N  68  
NTL  C34  H33  SING  N  N  69  
NTL  C34  H34  SING  N  N  70  
NTL  C35  H35  SING  N  N  71  
NTL  N03  H36  SING  N  N  72  
NTL  N07  H38  SING  N  N  73  
NTL  N07  H39  SING  N  N  74  
NTL  N14  H41  SING  N  N  75  
NTL  N14  H42  SING  N  N  76  
NTL  N18  H44  SING  N  N  77  
NTL  N33  H45  SING  N  N  78  
NTL  O23  H47  SING  N  N  79  
NTL  O31  H48  SING  N  N  80  
NTL  O36  H49  SING  N  N  81  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NTL  SMILES            ACDLabs               12.01  "CCNC1C(C(C(C(C1)N)OC2C(CC=C(CN)O2)NC(C)=O)O)OC3OCC(C)(C(C3O)NC)O"  
NTL  InChI             InChI                 1.03   "InChI=1S/C23H43N5O8/c1-5-27-15-8-13(25)18(35-21-14(28-11(2)29)7-6-12(9-24)34-21)16(30)19(15)36-22-17(31)20(26-4)23(3,32)10-33-22/h6,13-22,26-27,30-32H,5,7-10,24-25H2,1-4H3,(H,28,29)/t13-,14+,15+,16-,17+,18+,19-,20-,21+,22+,23-/m0/s1"  
NTL  InChIKey          InChI                 1.03   GQIIPKQUZXGMPH-PWAQZHRDSA-N  
NTL  SMILES_CANONICAL  CACTVS                3.385  "CCN[C@@H]1C[C@H](N)[C@@H](O[C@H]2OC(=CC[C@H]2NC(C)=O)CN)[C@H](O)[C@H]1O[C@H]3OC[C@](C)(O)[C@@H](NC)[C@H]3O"  
NTL  SMILES            CACTVS                3.385  "CCN[CH]1C[CH](N)[CH](O[CH]2OC(=CC[CH]2NC(C)=O)CN)[CH](O)[CH]1O[CH]3OC[C](C)(O)[CH](NC)[CH]3O"  
NTL  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCN[C@@H]1C[C@@H]([C@H]([C@@H]([C@H]1O[C@@H]2[C@@H]([C@@H]([C@@](CO2)(C)O)NC)O)O)O[C@@H]3[C@@H](CC=C(O3)CN)NC(=O)C)N"  
NTL  SMILES            "OpenEye OEToolkits"  2.0.7  "CCNC1CC(C(C(C1OC2C(C(C(CO2)(C)O)NC)O)O)OC3C(CC=C(O3)CN)NC(=O)C)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NTL  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[(2S,3R)-2-{[(1R,2S,3S,4R,6S)-6-amino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-lyxopyranosyl]oxy}-4-(ethylamino)-2-hydroxycyclohexyl]oxy}-6-(aminomethyl)-3,4-dihydro-2H-pyran-3-yl]acetamide"  
NTL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{N}-[(2~{S},3~{R})-6-(aminomethyl)-2-[(1~{R},2~{S},3~{S},4~{R},6~{S})-6-azanyl-4-(ethylamino)-3-[(2~{R},3~{R},4~{S},5~{R})-5-methyl-4-(methylamino)-3,5-bis(oxidanyl)oxan-2-yl]oxy-2-oxidanyl-cyclohexyl]oxy-3,4-dihydro-2~{H}-pyran-3-yl]ethanamide"  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     NTL
_pdbx_chem_comp_synonyms.name        acetylated-netilmicin
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NTL  "Create component"  2020-02-07  RCSB  
NTL  "Modify formula"    2020-02-07  RCSB  
NTL  "Modify synonyms"   2020-06-05  PDBE  
NTL  "Initial release"   2021-06-02  RCSB  
##
