data_M6L
# 
_chem_comp.id                                    M6L 
_chem_comp.name                                  "(phenylmethyl) ~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S},3~{S})-2-oxidanyl-1-oxidanylidene-1-(pyridin-2-ylmethylamino)hexan-3-yl]amino]pentan-2-yl]carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H36 N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-07-25 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        484.588 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     M6L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8AHV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
M6L N1  N1  N 0 1 N N N N N N 12.345 -17.107 -0.307 -5.087 0.199  -0.107 N1  M6L 1  
M6L N3  N2  N 0 1 N N N N N N 14.115 -21.341 -0.179 -0.996 1.672  0.218  N3  M6L 2  
M6L C4  C1  C 0 1 N N S N N N 13.302 -20.333 -0.894 -2.300 1.160  0.646  C4  M6L 3  
M6L C5  C2  C 0 1 N N S N N N 13.950 -18.915 -0.859 -3.411 2.013  0.031  C5  M6L 4  
M6L C6  C3  C 0 1 N N N N N N 12.818 -17.983 -1.204 -4.751 1.413  0.371  C6  M6L 5  
M6L C7  C4  C 0 1 N N N N N N 11.315 -16.100 -0.536 -6.392 -0.381 0.219  C7  M6L 6  
M6L C8  C5  C 0 1 Y N N N N N 9.970  -16.799 -0.692 -6.521 -1.730 -0.440 C8  M6L 7  
M6L C10 C6  C 0 1 Y N N N N N 8.508  -18.625 -0.215 -6.325 -4.108 -0.343 C10 M6L 8  
M6L C13 C7  C 0 1 N N N N N N 14.689 -22.361 -0.777 0.074  0.853  0.189  C13 M6L 9  
M6L C15 C8  C 0 1 N N N N N N 17.217 -22.549 -0.421 1.311  1.903  -1.687 C15 M6L 10 
M6L C17 C9  C 0 1 N N N N N N 18.273 -23.225 1.758  2.575  2.962  -3.564 C17 M6L 11 
M6L C20 C10 C 0 1 N N N N N N 13.355 -27.267 -0.402 6.013  -0.004 0.166  C20 M6L 12 
M6L C21 C11 C 0 1 Y N N N N N 13.739 -28.583 -1.051 6.879  -1.236 0.203  C21 M6L 13 
M6L C22 C12 C 0 1 Y N N N N N 13.379 -29.775 -0.429 7.401  -1.749 -0.970 C22 M6L 14 
M6L C24 C13 C 0 1 Y N N N N N 14.481 -31.015 -2.196 8.469  -3.497 0.269  C24 M6L 15 
M6L C26 C14 C 0 1 Y N N N N N 14.471 -28.612 -2.234 7.157  -1.850 1.409  C26 M6L 16 
M6L C1  C15 C 0 1 N N N N N N 10.174 -22.248 -0.448 -1.460 0.333  4.312  C1  M6L 17 
M6L C11 C16 C 0 1 Y N N N N N 7.575  -18.062 -1.057 -6.764 -4.151 -1.657 C11 M6L 18 
M6L C12 C17 C 0 1 Y N N N N N 7.857  -16.882 -1.720 -7.069 -2.968 -2.304 C12 M6L 19 
M6L C14 C18 C 0 1 N N S N N N 15.798 -23.046 -0.041 1.415  1.380  -0.253 C14 M6L 20 
M6L C16 C19 C 0 1 N N N N N N 18.290 -23.403 0.237  2.636  2.551  -2.091 C16 M6L 21 
M6L C18 C20 C 0 1 N N N N N N 19.656 -23.067 -0.309 2.884  3.789  -1.226 C18 M6L 22 
M6L C19 C21 C 0 1 N N N N N N 14.659 -25.177 0.084  3.713  0.597  -0.047 C19 M6L 23 
M6L C2  C22 C 0 1 N N N N N N 11.578 -21.950 0.068  -1.365 0.272  2.787  C2  M6L 24 
M6L C23 C23 C 0 1 Y N N N N N 13.747 -30.991 -1.003 8.196  -2.880 -0.937 C23 M6L 25 
M6L C25 C24 C 0 1 Y N N N N N 14.850 -29.816 -2.812 7.957  -2.977 1.443  C25 M6L 26 
M6L C3  C25 C 0 1 N N N N N N 11.965 -20.480 -0.189 -2.395 1.221  2.172  C3  M6L 27 
M6L C9  C26 C 0 1 Y N N N N N 9.713  -17.994 -0.029 -6.203 -2.871 0.273  C9  M6L 28 
M6L N2  N3  N 0 1 Y N N N N N 9.047  -16.279 -1.527 -6.941 -1.809 -1.687 N2  M6L 29 
M6L N4  N4  N 0 1 N N N N N N 15.693 -24.455 -0.360 2.406  0.303  -0.197 N4  M6L 30 
M6L O1  O1  O 0 1 N N N N N N 14.205 -18.735 0.536  -3.336 3.341  0.553  O1  M6L 31 
M6L O2  O2  O 0 1 N N N N N N 12.391 -18.008 -2.332 -5.527 2.024  1.076  O2  M6L 32 
M6L O3  O3  O 0 1 N N N N N N 14.368 -22.710 -1.899 -0.043 -0.308 0.517  O3  M6L 33 
M6L O4  O4  O 0 1 N N N N N N 13.818 -24.729 0.837  4.069  1.755  0.041  O4  M6L 34 
M6L O5  O5  O 0 1 N N N N N N 14.600 -26.550 -0.374 4.624  -0.394 0.004  O5  M6L 35 
M6L H9  H1  H 0 1 N N N N N N 12.738 -17.148 0.612  -4.466 -0.289 -0.670 H9  M6L 36 
M6L H16 H2  H 0 1 N N N N N N 14.234 -21.241 0.809  -0.903 2.601  -0.045 H16 M6L 37 
M6L H8  H3  H 0 1 N N N N N N 13.186 -20.636 -1.945 -2.410 0.126  0.317  H8  M6L 38 
M6L H35 H4  H 0 1 N N N N N N 14.826 -18.821 -1.517 -3.290 2.041  -1.052 H35 M6L 39 
M6L H11 H5  H 0 1 N N N N N N 11.547 -15.536 -1.451 -6.480 -0.494 1.299  H11 M6L 40 
M6L H10 H6  H 0 1 N N N N N N 11.276 -15.410 0.320  -7.183 0.277  -0.143 H10 M6L 41 
M6L H13 H7  H 0 1 N N N N N N 8.294  -19.553 0.294  -6.083 -5.016 0.189  H13 M6L 42 
M6L H19 H8  H 0 1 N N N N N N 17.336 -22.601 -1.513 1.091  1.075  -2.360 H19 M6L 43 
M6L H18 H9  H 0 1 N N N N N N 17.334 -21.507 -0.089 0.512  2.642  -1.747 H18 M6L 44 
M6L H23 H10 H 0 1 N N N N N N 19.056 -23.851 2.210  1.763  3.675  -3.709 H23 M6L 45 
M6L H22 H11 H 0 1 N N N N N N 18.460 -22.170 2.006  3.519  3.424  -3.852 H22 M6L 46 
M6L H21 H12 H 0 1 N N N N N N 17.291 -23.526 2.151  2.398  2.080  -4.180 H21 M6L 47 
M6L H29 H13 H 0 1 N N N N N N 12.604 -26.733 -1.003 6.129  0.550  1.098  H29 M6L 48 
M6L H28 H14 H 0 1 N N N N N N 12.966 -27.425 0.615  6.313  0.627  -0.670 H28 M6L 49 
M6L H30 H15 H 0 1 N N N N N N 12.818 -29.758 0.493  7.188  -1.267 -1.913 H30 M6L 50 
M6L H32 H16 H 0 1 N N N N N N 14.761 -31.959 -2.639 9.090  -4.380 0.295  H32 M6L 51 
M6L H34 H17 H 0 1 N N N N N N 14.749 -27.683 -2.710 6.750  -1.449 2.326  H34 M6L 52 
M6L H2  H18 H 0 1 N N N N N N 9.926  -23.302 -0.251 -1.261 1.351  4.648  H2  M6L 53 
M6L H1  H19 H 0 1 N N N N N N 9.449  -21.599 0.065  -2.460 0.036  4.626  H1  M6L 54 
M6L H3  H20 H 0 1 N N N N N N 10.133 -22.058 -1.531 -0.726 -0.343 4.750  H3  M6L 55 
M6L H14 H21 H 0 1 N N N N N N 6.619  -18.544 -1.200 -6.871 -5.096 -2.167 H14 M6L 56 
M6L H15 H22 H 0 1 N N N N N N 7.129  -16.446 -2.388 -7.416 -2.993 -3.326 H15 M6L 57 
M6L H17 H23 H 0 1 N N N N N N 15.657 -22.898 1.040  1.722  2.191  0.408  H17 M6L 58 
M6L H20 H24 H 0 1 N N N N N N 18.076 -24.459 0.013  3.448  1.839  -1.946 H20 M6L 59 
M6L H25 H25 H 0 1 N N N N N N 20.413 -23.697 0.182  2.928  3.496  -0.177 H25 M6L 60 
M6L H26 H26 H 0 1 N N N N N N 19.673 -23.251 -1.393 3.828  4.250  -1.514 H26 M6L 61 
M6L H24 H27 H 0 1 N N N N N N 19.878 -22.008 -0.114 2.072  4.502  -1.371 H24 M6L 62 
M6L H5  H28 H 0 1 N N N N N N 11.612 -22.146 1.150  -0.364 0.569  2.473  H5  M6L 63 
M6L H4  H29 H 0 1 N N N N N N 12.296 -22.605 -0.446 -1.563 -0.746 2.451  H4  M6L 64 
M6L H31 H30 H 0 1 N N N N N N 13.465 -31.918 -0.526 8.595  -3.286 -1.854 H31 M6L 65 
M6L H33 H31 H 0 1 N N N N N N 15.423 -29.826 -3.727 8.175  -3.457 2.386  H33 M6L 66 
M6L H7  H32 H 0 1 N N N N N N 12.019 -19.958 0.778  -2.197 2.239  2.508  H7  M6L 67 
M6L H6  H33 H 0 1 N N N N N N 11.187 -20.017 -0.813 -3.396 0.924  2.486  H6  M6L 68 
M6L H12 H34 H 0 1 N N N N N N 10.456 -18.423 0.627  -5.863 -2.800 1.295  H12 M6L 69 
M6L H27 H35 H 0 1 N N N N N N 16.400 -24.891 -0.917 2.122  -0.622 -0.267 H27 M6L 70 
M6L H36 H36 H 0 1 N N N N N N 14.916 -19.305 0.805  -3.436 3.392  1.514  H36 M6L 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
M6L C25 C26 DOUB Y N 1  
M6L C25 C24 SING Y N 2  
M6L O2  C6  DOUB N N 3  
M6L C26 C21 SING Y N 4  
M6L C24 C23 DOUB Y N 5  
M6L O3  C13 DOUB N N 6  
M6L C12 N2  DOUB Y N 7  
M6L C12 C11 SING Y N 8  
M6L N2  C8  SING Y N 9  
M6L C6  C5  SING N N 10 
M6L C6  N1  SING N N 11 
M6L C11 C10 DOUB Y N 12 
M6L C21 C22 DOUB Y N 13 
M6L C21 C20 SING N N 14 
M6L C23 C22 SING Y N 15 
M6L C4  C5  SING N N 16 
M6L C4  C3  SING N N 17 
M6L C4  N3  SING N N 18 
M6L C5  O1  SING N N 19 
M6L C13 N3  SING N N 20 
M6L C13 C14 SING N N 21 
M6L C8  C7  SING N N 22 
M6L C8  C9  DOUB Y N 23 
M6L C7  N1  SING N N 24 
M6L C1  C2  SING N N 25 
M6L C15 C14 SING N N 26 
M6L C15 C16 SING N N 27 
M6L C20 O5  SING N N 28 
M6L O5  C19 SING N N 29 
M6L N4  C14 SING N N 30 
M6L N4  C19 SING N N 31 
M6L C18 C16 SING N N 32 
M6L C10 C9  SING Y N 33 
M6L C3  C2  SING N N 34 
M6L C19 O4  DOUB N N 35 
M6L C16 C17 SING N N 36 
M6L N1  H9  SING N N 37 
M6L N3  H16 SING N N 38 
M6L C4  H8  SING N N 39 
M6L C5  H35 SING N N 40 
M6L C7  H11 SING N N 41 
M6L C7  H10 SING N N 42 
M6L C10 H13 SING N N 43 
M6L C15 H19 SING N N 44 
M6L C15 H18 SING N N 45 
M6L C17 H23 SING N N 46 
M6L C17 H22 SING N N 47 
M6L C17 H21 SING N N 48 
M6L C20 H29 SING N N 49 
M6L C20 H28 SING N N 50 
M6L C22 H30 SING N N 51 
M6L C24 H32 SING N N 52 
M6L C26 H34 SING N N 53 
M6L C1  H2  SING N N 54 
M6L C1  H1  SING N N 55 
M6L C1  H3  SING N N 56 
M6L C11 H14 SING N N 57 
M6L C12 H15 SING N N 58 
M6L C14 H17 SING N N 59 
M6L C16 H20 SING N N 60 
M6L C18 H25 SING N N 61 
M6L C18 H26 SING N N 62 
M6L C18 H24 SING N N 63 
M6L C2  H5  SING N N 64 
M6L C2  H4  SING N N 65 
M6L C23 H31 SING N N 66 
M6L C25 H33 SING N N 67 
M6L C3  H7  SING N N 68 
M6L C3  H6  SING N N 69 
M6L C9  H12 SING N N 70 
M6L N4  H27 SING N N 71 
M6L O1  H36 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
M6L InChI            InChI                1.06  "InChI=1S/C26H36N4O5/c1-4-10-21(23(31)25(33)28-16-20-13-8-9-14-27-20)29-24(32)22(15-18(2)3)30-26(34)35-17-19-11-6-5-7-12-19/h5-9,11-14,18,21-23,31H,4,10,15-17H2,1-3H3,(H,28,33)(H,29,32)(H,30,34)/t21-,22-,23-/m0/s1" 
M6L InChIKey         InChI                1.06  BZCGBQKQJMICGE-VABKMULXSA-N                                                                                                                                                                                            
M6L SMILES_CANONICAL CACTVS               3.385 "CCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)OCc1ccccc1)[C@H](O)C(=O)NCc2ccccn2"                                                                                                                                                 
M6L SMILES           CACTVS               3.385 "CCC[CH](NC(=O)[CH](CC(C)C)NC(=O)OCc1ccccc1)[CH](O)C(=O)NCc2ccccn2"                                                                                                                                                    
M6L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC[C@@H]([C@@H](C(=O)NCc1ccccn1)O)NC(=O)[C@H](CC(C)C)NC(=O)OCc2ccccc2"                                                                                                                                               
M6L SMILES           "OpenEye OEToolkits" 2.0.7 "CCCC(C(C(=O)NCc1ccccn1)O)NC(=O)C(CC(C)C)NC(=O)OCc2ccccc2"                                                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           M6L 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(phenylmethyl) ~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S},3~{S})-2-oxidanyl-1-oxidanylidene-1-(pyridin-2-ylmethylamino)hexan-3-yl]amino]pentan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
M6L "Create component"  2022-07-25 PDBE 
M6L "Modify descriptor" 2022-08-22 RCSB 
M6L "Initial release"   2023-08-02 RCSB 
M6L "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            M6L 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C5 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
