data_LXL
#

_chem_comp.id                                   LXL
_chem_comp.name                                 "1-ethyl-3-[2-methoxy-4-(5-methyl-4-{[(1S)-1-(pyridin-3-yl)butyl]amino}pyrimidin-2-yl)phenyl]urea"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H30 N6 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Lexibulin
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-08-28
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       434.534
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LXL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5CA0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LXL  C11  C1   C  0  1  N  N  N  17.906  222.839  31.777   8.158   3.631   0.118  C11  LXL   1  
LXL  C10  C2   C  0  1  N  N  N  17.078  223.255  33.009   6.715   3.268  -0.239  C10  LXL   2  
LXL  N9   N1   N  0  1  N  N  N  18.222  223.918  33.740   6.412   1.925   0.263  N9   LXL   3  
LXL  C8   C3   C  0  1  N  N  N  18.204  224.702  34.760   5.190   1.391   0.064  C8   LXL   4  
LXL  O32  O1   O  0  1  N  N  N  19.416  224.624  35.261   4.340   2.024  -0.532  O32  LXL   5  
LXL  N7   N2   N  0  1  N  N  N  17.212  225.155  35.457   4.911   0.156   0.526  N7   LXL   6  
LXL  C6   C4   C  0  1  Y  N  N  17.468  225.975  36.504   3.612  -0.351   0.424  C6   LXL   7  
LXL  C5   C5   C  0  1  Y  N  N  16.564  225.790  37.560   3.402  -1.730   0.404  C5   LXL   8  
LXL  C4   C6   C  0  1  Y  N  N  16.829  226.320  38.817   2.118  -2.231   0.304  C4   LXL   9  
LXL  O12  O2   O  0  1  N  N  N  15.407  225.187  37.235   4.460  -2.580   0.482  O12  LXL  10  
LXL  C13  C7   C  0  1  N  N  N  14.488  224.991  38.315   4.171  -3.980   0.456  C13  LXL  11  
LXL  C1   C8   C  0  1  Y  N  N  18.680  226.381  36.965   2.532   0.518   0.349  C1   LXL  12  
LXL  C2   C9   C  0  1  Y  N  N  18.978  227.035  38.148   1.249   0.021   0.249  C2   LXL  13  
LXL  C3   C10  C  0  1  Y  N  N  17.982  227.050  39.081   1.034  -1.356   0.223  C3   LXL  14  
LXL  C14  C11  C  0  1  Y  N  N  18.339  227.487  40.318  -0.344  -1.890   0.116  C14  LXL  15  
LXL  N19  N3   N  0  1  Y  N  N  17.999  226.661  41.321  -1.362  -1.043   0.035  N19  LXL  16  
LXL  N15  N4   N  0  1  Y  N  N  19.291  228.402  40.503  -0.529  -3.203   0.098  N15  LXL  17  
LXL  C16  C12  C  0  1  Y  N  N  19.691  228.753  41.790  -1.746  -3.718   0.003  C16  LXL  18  
LXL  C17  C13  C  0  1  Y  N  N  19.235  227.970  42.846  -2.834  -2.870  -0.078  C17  LXL  19  
LXL  C20  C14  C  0  1  N  N  N  19.645  228.240  44.146  -4.233  -3.421  -0.187  C20  LXL  20  
LXL  C18  C15  C  0  1  Y  N  N  18.343  226.943  42.575  -2.608  -1.491  -0.062  C18  LXL  21  
LXL  N21  N5   N  0  1  N  N  N  17.979  226.177  43.597  -3.669  -0.604  -0.147  N21  LXL  22  
LXL  C22  C16  C  0  1  N  N  S  17.123  225.008  43.396  -3.420   0.839  -0.129  C22  LXL  23  
LXL  C29  C17  C  0  1  N  N  N  17.225  224.093  44.617  -3.098   1.319  -1.545  C29  LXL  24  
LXL  C30  C18  C  0  1  N  N  N  16.366  222.849  44.383  -1.784   0.687  -2.011  C30  LXL  25  
LXL  C31  C19  C  0  1  N  N  N  16.467  221.909  45.581  -1.462   1.167  -3.428  C31  LXL  26  
LXL  C23  C20  C  0  1  Y  N  N  15.829  225.413  43.200  -4.647   1.554   0.377  C23  LXL  27  
LXL  C24  C21  C  0  1  Y  N  N  15.081  224.893  42.147  -4.524   2.640   1.231  C24  LXL  28  
LXL  C25  C22  C  0  1  Y  N  N  13.774  225.318  41.966  -5.680   3.267   1.670  C25  LXL  29  
LXL  C26  C23  C  0  1  Y  N  N  13.229  226.269  42.821  -6.907   2.792   1.246  C26  LXL  30  
LXL  N27  N6   N  0  1  Y  N  N  13.988  226.801  43.870  -6.985   1.757   0.434  N27  LXL  31  
LXL  C28  C24  C  0  1  Y  N  N  15.300  226.366  44.057  -5.907   1.140  -0.009  C28  LXL  32  
LXL  H1   H1   H  0  1  N  N  N  17.259  222.310  31.061   8.281   3.612   1.201  H1   LXL  33  
LXL  H2   H2   H  0  1  N  N  N  18.326  223.736  31.298   8.837   2.911  -0.338  H2   LXL  34  
LXL  H3   H3   H  0  1  N  N  N  18.724  222.174  32.092   8.384   4.630  -0.256  H3   LXL  35  
LXL  H4   H4   H  0  1  N  N  N  16.267  223.956  32.761   6.036   3.988   0.217  H4   LXL  36  
LXL  H5   H5   H  0  1  N  N  N  16.665  222.394  33.555   6.593   3.287  -1.322  H5   LXL  37  
LXL  H6   H6   H  0  1  N  N  N  19.131  223.717  33.376   7.090   1.420   0.738  H6   LXL  38  
LXL  H7   H7   H  0  1  N  N  N  16.272  224.904  35.226   5.612  -0.381   0.928  H7   LXL  39  
LXL  H8   H8   H  0  1  N  N  N  16.117  226.160  39.613   1.954  -3.299   0.288  H8   LXL  40  
LXL  H9   H9   H  0  1  N  N  N  13.582  224.493  37.940   3.664  -4.228  -0.476  H9   LXL  41  
LXL  H10  H10  H  0  1  N  N  N  14.958  224.364  39.087   5.101  -4.544   0.525  H10  LXL  42  
LXL  H11  H11  H  0  1  N  N  N  14.218  225.965  38.748   3.528  -4.234   1.299  H11  LXL  43  
LXL  H12  H12  H  0  1  N  N  N  19.522  226.165  36.324   2.696   1.585   0.369  H12  LXL  44  
LXL  H13  H13  H  0  1  N  N  N  19.936  227.503  38.321   0.410   0.699   0.191  H13  LXL  45  
LXL  H14  H14  H  0  1  N  N  N  20.333  229.604  41.963  -1.886  -4.789  -0.011  H14  LXL  46  
LXL  H15  H15  H  0  1  N  N  N  18.952  228.959  44.608  -4.649  -3.556   0.811  H15  LXL  47  
LXL  H16  H16  H  0  1  N  N  N  19.649  227.308  44.730  -4.855  -2.723  -0.748  H16  LXL  48  
LXL  H17  H17  H  0  1  N  N  N  20.659  228.667  44.129  -4.206  -4.380  -0.703  H17  LXL  49  
LXL  H18  H18  H  0  1  N  N  N  18.823  225.842  44.016  -4.577  -0.939  -0.217  H18  LXL  50  
LXL  H19  H19  H  0  1  N  N  N  17.483  224.449  42.520  -2.578   1.055   0.528  H19  LXL  51  
LXL  H20  H20  H  0  1  N  N  N  18.273  223.794  44.767  -3.902   1.025  -2.220  H20  LXL  52  
LXL  H21  H21  H  0  1  N  N  N  16.865  224.627  45.509  -3.000   2.404  -1.548  H21  LXL  53  
LXL  H22  H22  H  0  1  N  N  N  15.317  223.152  44.245  -0.980   0.981  -1.336  H22  LXL  54  
LXL  H23  H23  H  0  1  N  N  N  16.719  222.328  43.481  -1.882  -0.398  -2.008  H23  LXL  55  
LXL  H24  H24  H  0  1  N  N  N  15.846  221.019  45.402  -1.364   2.252  -3.430  H24  LXL  56  
LXL  H25  H25  H  0  1  N  N  N  17.515  221.604  45.720  -0.526   0.717  -3.759  H25  LXL  57  
LXL  H26  H26  H  0  1  N  N  N  16.113  222.427  46.484  -2.266   0.873  -4.102  H26  LXL  58  
LXL  H27  H27  H  0  1  N  N  N  15.515  224.165  41.477  -3.552   2.989   1.546  H27  LXL  59  
LXL  H28  H28  H  0  1  N  N  N  13.180  224.911  41.161  -5.622   4.115   2.336  H28  LXL  60  
LXL  H29  H29  H  0  1  N  N  N  12.211  226.600  42.675  -7.812   3.275   1.584  H29  LXL  61  
LXL  H30  H30  H  0  1  N  N  N  15.898  226.768  44.862  -6.011   0.298  -0.678  H30  LXL  62  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LXL  C11  C10  SING  N  N   1  
LXL  C10  N9   SING  N  N   2  
LXL  N9   C8   SING  N  N   3  
LXL  C8   O32  DOUB  N  N   4  
LXL  C8   N7   SING  N  N   5  
LXL  N7   C6   SING  N  N   6  
LXL  C6   C1   DOUB  Y  N   7  
LXL  C6   C5   SING  Y  N   8  
LXL  C1   C2   SING  Y  N   9  
LXL  O12  C5   SING  N  N  10  
LXL  O12  C13  SING  N  N  11  
LXL  C5   C4   DOUB  Y  N  12  
LXL  C2   C3   DOUB  Y  N  13  
LXL  C4   C3   SING  Y  N  14  
LXL  C3   C14  SING  N  N  15  
LXL  C14  N15  DOUB  Y  N  16  
LXL  C14  N19  SING  Y  N  17  
LXL  N15  C16  SING  Y  N  18  
LXL  N19  C18  DOUB  Y  N  19  
LXL  C16  C17  DOUB  Y  N  20  
LXL  C25  C24  DOUB  Y  N  21  
LXL  C25  C26  SING  Y  N  22  
LXL  C24  C23  SING  Y  N  23  
LXL  C18  C17  SING  Y  N  24  
LXL  C18  N21  SING  N  N  25  
LXL  C26  N27  DOUB  Y  N  26  
LXL  C17  C20  SING  N  N  27  
LXL  C23  C22  SING  N  N  28  
LXL  C23  C28  DOUB  Y  N  29  
LXL  C22  N21  SING  N  N  30  
LXL  C22  C29  SING  N  N  31  
LXL  N27  C28  SING  Y  N  32  
LXL  C30  C29  SING  N  N  33  
LXL  C30  C31  SING  N  N  34  
LXL  C11  H1   SING  N  N  35  
LXL  C11  H2   SING  N  N  36  
LXL  C11  H3   SING  N  N  37  
LXL  C10  H4   SING  N  N  38  
LXL  C10  H5   SING  N  N  39  
LXL  N9   H6   SING  N  N  40  
LXL  N7   H7   SING  N  N  41  
LXL  C4   H8   SING  N  N  42  
LXL  C13  H9   SING  N  N  43  
LXL  C13  H10  SING  N  N  44  
LXL  C13  H11  SING  N  N  45  
LXL  C1   H12  SING  N  N  46  
LXL  C2   H13  SING  N  N  47  
LXL  C16  H14  SING  N  N  48  
LXL  C20  H15  SING  N  N  49  
LXL  C20  H16  SING  N  N  50  
LXL  C20  H17  SING  N  N  51  
LXL  N21  H18  SING  N  N  52  
LXL  C22  H19  SING  N  N  53  
LXL  C29  H20  SING  N  N  54  
LXL  C29  H21  SING  N  N  55  
LXL  C30  H22  SING  N  N  56  
LXL  C30  H23  SING  N  N  57  
LXL  C31  H24  SING  N  N  58  
LXL  C31  H25  SING  N  N  59  
LXL  C31  H26  SING  N  N  60  
LXL  C24  H27  SING  N  N  61  
LXL  C25  H28  SING  N  N  62  
LXL  C26  H29  SING  N  N  63  
LXL  C28  H30  SING  N  N  64  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LXL  SMILES            ACDLabs               12.01  "CCNC(=O)Nc1ccc(cc1OC)c2ncc(C)c(n2)NC(CCC)c3cnccc3"  
LXL  InChI             InChI                 1.03   "InChI=1S/C24H30N6O2/c1-5-8-19(18-9-7-12-25-15-18)28-22-16(3)14-27-23(30-22)17-10-11-20(21(13-17)32-4)29-24(31)26-6-2/h7,9-15,19H,5-6,8H2,1-4H3,(H2,26,29,31)(H,27,28,30)/t19-/m0/s1"  
LXL  InChIKey          InChI                 1.03   MTJHLONVHHPNSI-IBGZPJMESA-N  
LXL  SMILES_CANONICAL  CACTVS                3.385  "CCC[C@H](Nc1nc(ncc1C)c2ccc(NC(=O)NCC)c(OC)c2)c3cccnc3"  
LXL  SMILES            CACTVS                3.385  "CCC[CH](Nc1nc(ncc1C)c2ccc(NC(=O)NCC)c(OC)c2)c3cccnc3"  
LXL  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "CCC[C@@H](c1cccnc1)Nc2c(cnc(n2)c3ccc(c(c3)OC)NC(=O)NCC)C"  
LXL  SMILES            "OpenEye OEToolkits"  1.9.2  "CCCC(c1cccnc1)Nc2c(cnc(n2)c3ccc(c(c3)OC)NC(=O)NCC)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LXL  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-ethyl-3-[2-methoxy-4-(5-methyl-4-{[(1S)-1-(pyridin-3-yl)butyl]amino}pyrimidin-2-yl)phenyl]urea"  
LXL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "1-ethyl-3-[2-methoxy-4-[5-methyl-4-[[(1S)-1-pyridin-3-ylbutyl]amino]pyrimidin-2-yl]phenyl]urea"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LXL  "Create component"  2015-08-28  PDBJ  
LXL  "Initial release"   2015-11-04  RCSB  
LXL  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     LXL
_pdbx_chem_comp_synonyms.name        Lexibulin
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
