data_KXL
# 
_chem_comp.id                                    KXL 
_chem_comp.name                                  "(2S)-N-[(2S)-1-(dimethylamino)-1-oxidanylidene-3-phenyl-propan-2-yl]-2-oxidanyl-N'-(2-pyridin-2-ylethyl)butanediamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H28 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-07 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        412.482 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KXL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZVF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KXL O1   O1  O 0 1 N N N N N N 0.337  -4.671  23.239 2.221  0.860  1.427  O1   KXL 1  
KXL O2   O2  O 0 1 N N N N N N 0.304  -7.542  25.305 0.017  -0.073 2.793  O2   KXL 2  
KXL O3   O3  O 0 1 N N N N N N 2.611  -8.939  23.146 -2.348 -0.904 2.069  O3   KXL 3  
KXL O4   O4  O 0 1 N N N N N N 3.119  -10.046 27.662 -2.671 -2.533 -1.189 O4   KXL 4  
KXL N5   N1  N 0 1 N N N N N N 2.699  -8.858  25.376 -2.320 -0.152 -0.018 N5   KXL 5  
KXL N6   N2  N 0 1 N N N N N N 4.031  -11.786 26.632 -4.732 -2.856 -0.435 N6   KXL 6  
KXL N7   N3  N 0 1 N N N N N N 0.563  -4.203  25.398 3.046  -0.601 -0.025 N7   KXL 7  
KXL N8   N4  N 0 1 Y N N N N N 0.177  -3.493  28.228 6.957  1.023  -0.831 N8   KXL 8  
KXL C9   C1  C 0 1 N N N N N N 0.875  -4.908  24.301 2.023  -0.072 0.675  C9   KXL 9  
KXL C10  C2  C 0 1 N N N N N N 1.914  -6.000  24.398 0.634  -0.637 0.525  C10  KXL 10 
KXL C11  C3  C 0 1 N N S N N N 1.224  -7.362  24.223 -0.331 0.139  1.423  C11  KXL 11 
KXL C12  C4  C 0 1 N N N N N N 2.238  -8.466  24.204 -1.739 -0.343 1.182  C12  KXL 12 
KXL C13  C5  C 0 1 N N S N N N 3.963  -9.589  25.520 -3.688 -0.621 -0.253 C13  KXL 13 
KXL C14  C6  C 0 1 N N N N N N 5.215  -8.754  25.757 -4.328 0.209  -1.368 C14  KXL 14 
KXL C15  C7  C 0 1 Y N N N N N 6.468  -9.613  25.842 -4.485 1.635  -0.906 C15  KXL 15 
KXL C16  C8  C 0 1 Y N N N N N 6.830  -10.269 27.014 -3.470 2.547  -1.125 C16  KXL 16 
KXL C17  C9  C 0 1 Y N N N N N 7.988  -11.033 27.062 -3.613 3.855  -0.702 C17  KXL 17 
KXL C18  C10 C 0 1 Y N N N N N 8.796  -11.138 25.938 -4.772 4.251  -0.059 C18  KXL 18 
KXL C19  C11 C 0 1 Y N N N N N 8.442  -10.472 24.774 -5.786 3.338  0.160  C19  KXL 19 
KXL C20  C12 C 0 1 Y N N N N N 7.279  -9.716  24.725 -5.645 2.031  -0.269 C20  KXL 20 
KXL C21  C13 C 0 1 N N N N N N 3.689  -10.504 26.681 -3.659 -2.072 -0.659 C21  KXL 21 
KXL C22  C14 C 0 1 N N N N N N 4.523  -12.474 25.450 -5.882 -2.330 0.305  C22  KXL 22 
KXL C23  C15 C 0 1 N N N N N N 3.909  -12.611 27.823 -4.748 -4.235 -0.931 C23  KXL 23 
KXL C24  C16 C 0 1 N N N N N N -0.457 -3.181  25.277 4.396  -0.052 0.121  C24  KXL 24 
KXL C25  C17 C 0 1 N N N N N N -1.493 -3.216  26.394 5.362  -0.828 -0.777 C25  KXL 25 
KXL C26  C18 C 0 1 Y N N N N N -0.883 -2.824  27.721 6.751  -0.263 -0.627 C26  KXL 26 
KXL C27  C19 C 0 1 Y N N N N N -1.435 -1.763  28.424 7.794  -1.099 -0.278 C27  KXL 27 
KXL C28  C20 C 0 1 Y N N N N N -0.887 -1.399  29.647 9.068  -0.570 -0.142 C28  KXL 28 
KXL C29  C21 C 0 1 Y N N N N N 0.202  -2.106  30.138 9.246  0.788  -0.364 C29  KXL 29 
KXL C30  C22 C 0 1 Y N N N N N 0.727  -3.159  29.403 8.155  1.561  -0.710 C30  KXL 30 
KXL HO2  H1  H 0 1 N N N N N N -0.331 -6.835  25.303 -0.018 -0.999 3.069  HO2  KXL 31 
KXL HN5  H2  H 0 1 N N N N N N 2.167  -8.649  26.197 -1.833 0.296  -0.727 HN5  KXL 32 
KXL HN7  H3  H 0 1 N N N N N N 1.019  -4.377  26.271 2.887  -1.346 -0.626 HN7  KXL 33 
KXL H1   H4  H 0 1 N N N N N N 2.403  -5.958  25.382 0.316  -0.547 -0.513 H1   KXL 34 
KXL H101 H5  H 0 0 N N N N N N 2.667  -5.864  23.608 0.636  -1.687 0.816  H101 KXL 35 
KXL H11  H6  H 0 1 N N N N N N 0.681  -7.358  23.266 -0.267 1.202  1.192  H11  KXL 36 
KXL H13  H7  H 0 1 N N N N N N 4.124  -10.204 24.622 -4.272 -0.512 0.662  H13  KXL 37 
KXL H141 H8  H 0 0 N N N N N N 5.329  -8.042  24.926 -3.692 0.181  -2.252 H141 KXL 38 
KXL H142 H9  H 0 0 N N N N N N 5.099  -8.201  26.701 -5.307 -0.204 -1.612 H142 KXL 39 
KXL H16  H10 H 0 1 N N N N N N 6.207  -10.183 27.892 -2.565 2.239  -1.627 H16  KXL 40 
KXL H17  H11 H 0 1 N N N N N N 8.260  -11.545 27.973 -2.820 4.569  -0.873 H17  KXL 41 
KXL H18  H12 H 0 1 N N N N N N 9.695  -11.735 25.970 -4.884 5.273  0.272  H18  KXL 42 
KXL H19  H13 H 0 1 N N N N N N 9.074  -10.542 23.901 -6.691 3.647  0.662  H19  KXL 43 
KXL H20  H14 H 0 1 N N N N N N 7.006  -9.207  23.813 -6.438 1.318  -0.097 H20  KXL 44 
KXL H222 H15 H 0 0 N N N N N N 4.727  -13.526 25.696 -6.344 -1.525 -0.266 H222 KXL 45 
KXL H223 H16 H 0 0 N N N N N N 3.765  -12.424 24.655 -6.609 -3.128 0.462  H223 KXL 46 
KXL H221 H17 H 0 0 N N N N N N 5.449  -11.992 25.104 -5.549 -1.947 1.269  H221 KXL 47 
KXL H233 H18 H 0 0 N N N N N N 3.531  -12.000 28.656 -4.332 -4.898 -0.173 H233 KXL 48 
KXL H232 H19 H 0 0 N N N N N N 3.209  -13.436 27.627 -5.774 -4.530 -1.150 H232 KXL 49 
KXL H231 H20 H 0 0 N N N N N N 4.895  -13.021 28.087 -4.150 -4.301 -1.840 H231 KXL 50 
KXL H241 H21 H 0 0 N N N N N N 0.034  -2.197  25.289 4.394  0.998  -0.170 H241 KXL 51 
KXL H242 H22 H 0 0 N N N N N N -0.976 -3.320  24.317 4.714  -0.142 1.159  H242 KXL 52 
KXL H251 H23 H 0 0 N N N N N N -2.305 -2.515  26.152 5.364  -1.878 -0.487 H251 KXL 53 
KXL H252 H24 H 0 0 N N N N N N -1.900 -4.235  26.474 5.044  -0.738 -1.816 H252 KXL 54 
KXL H27  H25 H 0 1 N N N N N N -2.282 -1.226  28.024 7.620  -2.152 -0.112 H27  KXL 55 
KXL H28  H26 H 0 1 N N N N N N -1.303 -0.576  30.209 9.903  -1.199 0.130  H28  KXL 56 
KXL H29  H27 H 0 1 N N N N N N 0.639  -1.837  31.088 10.224 1.234  -0.267 H29  KXL 57 
KXL H30  H28 H 0 1 N N N N N N 1.578  -3.709  29.778 8.285  2.619  -0.886 H30  KXL 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KXL O3  C12  DOUB N N 1  
KXL O1  C9   DOUB N N 2  
KXL C12 C11  SING N N 3  
KXL C12 N5   SING N N 4  
KXL C11 C10  SING N N 5  
KXL C11 O2   SING N N 6  
KXL C9  C10  SING N N 7  
KXL C9  N7   SING N N 8  
KXL C20 C19  DOUB Y N 9  
KXL C20 C15  SING Y N 10 
KXL C19 C18  SING Y N 11 
KXL C24 N7   SING N N 12 
KXL C24 C25  SING N N 13 
KXL N5  C13  SING N N 14 
KXL C22 N6   SING N N 15 
KXL C13 C14  SING N N 16 
KXL C13 C21  SING N N 17 
KXL C14 C15  SING N N 18 
KXL C15 C16  DOUB Y N 19 
KXL C18 C17  DOUB Y N 20 
KXL C25 C26  SING N N 21 
KXL N6  C21  SING N N 22 
KXL N6  C23  SING N N 23 
KXL C21 O4   DOUB N N 24 
KXL C16 C17  SING Y N 25 
KXL C26 N8   DOUB Y N 26 
KXL C26 C27  SING Y N 27 
KXL N8  C30  SING Y N 28 
KXL C27 C28  DOUB Y N 29 
KXL C30 C29  DOUB Y N 30 
KXL C28 C29  SING Y N 31 
KXL O2  HO2  SING N N 32 
KXL N5  HN5  SING N N 33 
KXL N7  HN7  SING N N 34 
KXL C10 H1   SING N N 35 
KXL C10 H101 SING N N 36 
KXL C11 H11  SING N N 37 
KXL C13 H13  SING N N 38 
KXL C14 H141 SING N N 39 
KXL C14 H142 SING N N 40 
KXL C16 H16  SING N N 41 
KXL C17 H17  SING N N 42 
KXL C18 H18  SING N N 43 
KXL C19 H19  SING N N 44 
KXL C20 H20  SING N N 45 
KXL C22 H222 SING N N 46 
KXL C22 H223 SING N N 47 
KXL C22 H221 SING N N 48 
KXL C23 H233 SING N N 49 
KXL C23 H232 SING N N 50 
KXL C23 H231 SING N N 51 
KXL C24 H241 SING N N 52 
KXL C24 H242 SING N N 53 
KXL C25 H251 SING N N 54 
KXL C25 H252 SING N N 55 
KXL C27 H27  SING N N 56 
KXL C28 H28  SING N N 57 
KXL C29 H29  SING N N 58 
KXL C30 H30  SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KXL InChI            InChI                1.06  "InChI=1S/C22H28N4O4/c1-26(2)22(30)18(14-16-8-4-3-5-9-16)25-21(29)19(27)15-20(28)24-13-11-17-10-6-7-12-23-17/h3-10,12,18-19,27H,11,13-15H2,1-2H3,(H,24,28)(H,25,29)/t18-,19-/m0/s1" 
KXL InChIKey         InChI                1.06  WUIQDGGROZLMJW-OALUTQOASA-N                                                                                                                                                         
KXL SMILES_CANONICAL CACTVS               3.385 "CN(C)C(=O)[C@H](Cc1ccccc1)NC(=O)[C@@H](O)CC(=O)NCCc2ccccn2"                                                                                                                        
KXL SMILES           CACTVS               3.385 "CN(C)C(=O)[CH](Cc1ccccc1)NC(=O)[CH](O)CC(=O)NCCc2ccccn2"                                                                                                                           
KXL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CC(=O)NCCc2ccccn2)O"                                                                                                                         
KXL SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)C(Cc1ccccc1)NC(=O)C(CC(=O)NCCc2ccccn2)O"                                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           KXL 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-~{N}-[(2~{S})-1-(dimethylamino)-1-oxidanylidene-3-phenyl-propan-2-yl]-2-oxidanyl-~{N}'-(2-pyridin-2-ylethyl)butanediamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KXL "Create component"  2022-06-07 PDBE 
KXL "Modify descriptor" 2022-08-22 RCSB 
KXL "Initial release"   2023-11-29 RCSB 
KXL "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            KXL 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C10 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
