data_KHL
# 
_chem_comp.id                                    KHL 
_chem_comp.name                                  "(1~{R},24~{R},25~{S},26~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-25,26-bis(oxidanyl)-27-oxa-2,4,6,9,14,17,20,22-octazatetracyclo[22.2.1.0^{2,10}.0^{3,8}]heptacosa-3(8),4,6,9-tetraen-11-yne-16,21-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H34 N14 O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-25 
_chem_comp.pdbx_modified_date                    2023-01-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        694.659 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KHL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZZG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KHL C10 C1  C 0 1 N N N 17.443 6.534  14.035 4.550  2.862  0.970  C10 KHL 1  
KHL C13 C2  C 0 1 N N R 19.753 9.331  14.092 3.645  -0.594 1.530  C13 KHL 2  
KHL C15 C3  C 0 1 Y N N 18.669 11.402 12.833 2.784  -1.718 -0.578 C15 KHL 3  
KHL C17 C4  C 0 1 N N N 15.977 10.737 13.135 0.802  -0.398 -1.552 C17 KHL 4  
KHL C20 C5  C 0 1 N N N 12.769 8.657  12.468 -0.565 2.051  -3.190 C20 KHL 5  
KHL C21 C6  C 0 1 N N N 14.059 9.822  10.636 -2.316 0.379  -3.140 C21 KHL 6  
KHL C22 C7  C 0 1 N N R 15.579 9.906  9.985  -2.867 -0.794 -2.327 C22 KHL 7  
KHL C24 C8  C 0 1 N N R 17.272 8.319  9.128  -4.331 -1.109 -0.561 C24 KHL 8  
KHL C26 C9  C 0 1 N N S 15.640 10.091 8.512  -4.179 -1.298 -2.958 C26 KHL 9  
KHL C02 C10 C 0 1 N N N 12.674 7.108  12.009 -0.592 3.134  -2.143 C02 KHL 10 
KHL C04 C11 C 0 1 N N N 13.423 5.012  10.689 0.049  5.274  -1.263 C04 KHL 11 
KHL C05 C12 C 0 1 N N N 14.163 4.036  11.656 1.428  5.910  -1.076 C05 KHL 12 
KHL C07 C13 C 0 1 N N N 16.362 5.278  11.997 2.980  4.433  0.031  C07 KHL 13 
KHL C11 C14 C 0 1 N N R 18.854 7.184  14.352 4.099  1.677  1.821  C11 KHL 14 
KHL C16 C15 C 0 1 N N N 17.147 11.028 13.004 1.674  -0.845 -0.856 C16 KHL 15 
KHL C18 C16 C 0 1 N N N 14.530 10.361 13.235 -0.012 -0.268 -2.781 C18 KHL 16 
KHL C25 C17 C 0 1 N N R 16.937 9.315  8.024  -5.225 -1.151 -1.826 C25 KHL 17 
KHL C30 C18 C 0 1 Y N N 16.259 6.438  7.726  -4.952 0.917  0.810  C30 KHL 18 
KHL C32 C19 C 0 1 Y N N 17.869 4.889  7.640  -6.248 0.051  2.318  C32 KHL 19 
KHL C33 C20 C 0 1 Y N N 18.372 5.980  8.420  -5.834 -0.993 1.473  C33 KHL 20 
KHL C35 C21 C 0 1 Y N N 20.383 4.889  8.744  -7.073 -2.472 2.721  C35 KHL 21 
KHL C37 C22 C 0 1 Y N N 18.751 3.742  7.440  -7.108 -0.261 3.384  C37 KHL 22 
KHL C40 C23 C 0 1 Y N N 20.648 12.446 12.288 4.193  -3.361 -0.783 C40 KHL 23 
KHL C41 C24 C 0 1 Y N N 21.035 11.266 12.988 4.603  -2.595 0.323  C41 KHL 24 
KHL C43 C25 C 0 1 Y N N 23.274 11.742 12.782 6.397  -4.003 0.606  C43 KHL 25 
KHL C45 C26 C 0 1 Y N N 21.753 13.325 11.806 4.958  -4.491 -1.130 C45 KHL 26 
KHL C47 C27 C 0 1 N N R 18.904 9.414  15.389 5.010  -0.550 2.240  C47 KHL 27 
KHL C48 C28 C 0 1 N N S 18.817 7.937  15.679 5.322  0.951  2.410  C48 KHL 28 
KHL N03 N1  N 0 1 N N N 13.566 6.468  11.100 0.137  4.272  -2.352 N03 KHL 29 
KHL N06 N2  N 0 1 N N N 15.137 4.800  12.512 2.027  5.396  0.173  N06 KHL 30 
KHL N09 N3  N 0 1 N N N 17.406 6.024  12.595 3.587  3.968  1.158  N09 KHL 31 
KHL N14 N4  N 0 1 Y N N 19.791 10.598 13.340 3.675  -1.588 0.457  N14 KHL 32 
KHL N19 N5  N 0 1 N N N 14.044 9.337  12.036 -1.015 0.786  -2.593 N19 KHL 33 
KHL N29 N6  N 0 1 Y N N 17.328 6.980  8.468  -5.014 -0.417 0.535  N29 KHL 34 
KHL N31 N7  N 0 1 Y N N 16.550 5.216  7.232  -5.677 1.189  1.856  N31 KHL 35 
KHL N34 N8  N 0 1 Y N N 19.633 5.994  8.981  -6.267 -2.226 1.710  N34 KHL 36 
KHL N36 N9  N 0 1 Y N N 19.994 3.774  8.008  -7.489 -1.525 3.542  N36 KHL 37 
KHL N38 N10 N 0 1 N N N 18.322 2.609  6.672  -7.549 0.725  4.250  N38 KHL 38 
KHL N39 N11 N 0 1 Y N N 19.209 12.482 12.222 3.087  -2.777 -1.291 N39 KHL 39 
KHL N42 N12 N 0 1 Y N N 22.346 10.892 13.252 5.704  -2.948 0.978  N42 KHL 40 
KHL N44 N13 N 0 1 Y N N 23.042 12.927 12.083 6.044  -4.763 -0.412 N44 KHL 41 
KHL N46 N14 N 0 1 N N N 21.511 14.521 11.093 4.589  -5.299 -2.191 N46 KHL 42 
KHL O01 O1  O 0 1 N N N 11.735 6.479  12.504 -1.249 2.998  -1.132 O01 KHL 43 
KHL O08 O2  O 0 1 N N N 16.492 4.940  10.839 3.279  4.002  -1.066 O08 KHL 44 
KHL O12 O3  O 0 1 N N N 19.283 8.188  13.399 3.393  0.720  1.012  O12 KHL 45 
KHL O23 O4  O 0 1 N N N 16.249 8.532  10.101 -3.173 -0.361 -0.991 O23 KHL 46 
KHL O27 O5  O 0 1 N N N 15.720 11.449 8.271  -4.052 -2.666 -3.350 O27 KHL 47 
KHL O28 O6  O 0 1 N N N 18.048 10.126 7.900  -6.103 -2.278 -1.793 O28 KHL 48 
KHL O49 O7  O 0 1 N N N 19.907 7.541  16.498 5.474  1.274  3.794  O49 KHL 49 
KHL O50 O8  O 0 1 N N N 19.458 10.081 16.477 4.928  -1.189 3.515  O50 KHL 50 
KHL H1  H1  H 0 1 N N N 16.656 7.290  14.173 5.542  3.184  1.286  H1  KHL 51 
KHL H2  H2  H 0 1 N N N 17.268 5.693  14.722 4.576  2.571  -0.080 H2  KHL 52 
KHL H3  H3  H 0 1 N N N 20.783 9.122  14.417 2.869  -0.850 2.252  H3  KHL 53 
KHL H4  H4  H 0 1 N N N 11.919 9.202  12.032 -1.229 2.322  -4.011 H4  KHL 54 
KHL H5  H5  H 0 1 N N N 12.707 8.699  13.565 0.451  1.934  -3.567 H5  KHL 55 
KHL H6  H6  H 0 1 N N N 13.613 10.827 10.610 -2.193 0.075  -4.180 H6  KHL 56 
KHL H7  H7  H 0 1 N N N 13.455 9.137  10.023 -3.011 1.217  -3.087 H7  KHL 57 
KHL H8  H8  H 0 1 N N N 16.161 10.674 10.515 -2.134 -1.600 -2.296 H8  KHL 58 
KHL H9  H9  H 0 1 N N N 18.259 8.564  9.547  -4.046 -2.116 -0.258 H9  KHL 59 
KHL H10 H10 H 0 1 N N N 14.756 9.642  8.035  -4.453 -0.681 -3.813 H10 KHL 60 
KHL H11 H11 H 0 1 N N N 12.354 4.753  10.678 -0.257 4.784  -0.339 H11 KHL 61 
KHL H12 H12 H 0 1 N N N 13.840 4.889  9.679  -0.675 6.043  -1.531 H12 KHL 62 
KHL H13 H13 H 0 1 N N N 13.427 3.534  12.301 2.067  5.653  -1.920 H13 KHL 63 
KHL H14 H14 H 0 1 N N N 14.708 3.283  11.067 1.324  6.994  -1.012 H14 KHL 64 
KHL H15 H15 H 0 1 N N N 19.600 6.378  14.416 3.453  2.018  2.631  H15 KHL 65 
KHL H16 H16 H 0 1 N N N 13.925 11.278 13.179 0.635  -0.010 -3.619 H16 KHL 66 
KHL H17 H17 H 0 1 N N N 14.362 9.870  14.205 -0.513 -1.214 -2.986 H17 KHL 67 
KHL H18 H18 H 0 1 N N N 16.708 8.779  7.091  -5.788 -0.224 -1.935 H18 KHL 68 
KHL H19 H19 H 0 1 N N N 15.317 6.942  7.571  -4.383 1.640  0.245  H19 KHL 69 
KHL H20 H20 H 0 1 N N N 21.377 4.873  9.167  -7.407 -3.486 2.886  H20 KHL 70 
KHL H21 H21 H 0 1 N N N 24.306 11.481 12.964 7.290  -4.256 1.156  H21 KHL 71 
KHL H22 H22 H 0 1 N N N 17.905 9.804  15.143 5.772  -1.028 1.625  H22 KHL 72 
KHL H23 H23 H 0 1 N N N 17.863 7.724  16.183 6.224  1.217  1.858  H23 KHL 73 
KHL H24 H24 H 0 1 N N N 14.320 7.001  10.715 0.669  4.412  -3.151 H24 KHL 74 
KHL H25 H25 H 0 1 N N N 14.911 4.974  13.470 1.757  5.726  1.045  H25 KHL 75 
KHL H26 H26 H 0 1 N N N 18.195 6.238  12.020 3.398  4.341  2.034  H26 KHL 76 
KHL H28 H28 H 0 1 N N N 19.052 1.926  6.648  -7.264 1.643  4.124  H28 KHL 77 
KHL H29 H29 H 0 1 N N N 17.507 2.211  7.093  -8.143 0.497  4.982  H29 KHL 78 
KHL H30 H30 H 0 1 N N N 22.382 14.956 10.865 5.125  -6.075 -2.419 H30 KHL 79 
KHL H31 H31 H 0 1 N N N 21.013 14.312 10.251 3.795  -5.089 -2.707 H31 KHL 80 
KHL H32 H32 H 0 1 N N N 14.927 11.873 8.577  -4.849 -3.036 -3.753 H32 KHL 81 
KHL H33 H33 H 0 1 N N N 18.788 9.608  7.606  -6.619 -2.399 -2.602 H33 KHL 82 
KHL H34 H34 H 0 1 N N N 19.874 8.015  17.321 6.229  0.845  4.218  H34 KHL 83 
KHL H35 H35 H 0 1 N N N 18.847 10.064 17.204 5.760  -1.191 4.008  H35 KHL 84 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KHL N38 C37 SING N N 1  
KHL N31 C32 SING Y N 2  
KHL N31 C30 DOUB Y N 3  
KHL C37 C32 DOUB Y N 4  
KHL C37 N36 SING Y N 5  
KHL C32 C33 SING Y N 6  
KHL C30 N29 SING Y N 7  
KHL O28 C25 SING N N 8  
KHL N36 C35 DOUB Y N 9  
KHL C25 C26 SING N N 10 
KHL C25 C24 SING N N 11 
KHL O27 C26 SING N N 12 
KHL C33 N29 SING Y N 13 
KHL C33 N34 DOUB Y N 14 
KHL N29 C24 SING N N 15 
KHL C26 C22 SING N N 16 
KHL C35 N34 SING Y N 17 
KHL C24 O23 SING N N 18 
KHL C22 O23 SING N N 19 
KHL C22 C21 SING N N 20 
KHL C21 N19 SING N N 21 
KHL C04 N03 SING N N 22 
KHL C04 C05 SING N N 23 
KHL O08 C07 DOUB N N 24 
KHL N46 C45 SING N N 25 
KHL N03 C02 SING N N 26 
KHL C05 N06 SING N N 27 
KHL C45 N44 DOUB Y N 28 
KHL C45 C40 SING Y N 29 
KHL C07 N06 SING N N 30 
KHL C07 N09 SING N N 31 
KHL C02 C20 SING N N 32 
KHL C02 O01 DOUB N N 33 
KHL N19 C20 SING N N 34 
KHL N19 C18 SING N N 35 
KHL N44 C43 SING Y N 36 
KHL N39 C40 SING Y N 37 
KHL N39 C15 DOUB Y N 38 
KHL C40 C41 DOUB Y N 39 
KHL N09 C10 SING N N 40 
KHL C43 N42 DOUB Y N 41 
KHL C15 C16 SING N N 42 
KHL C15 N14 SING Y N 43 
KHL C41 N42 SING Y N 44 
KHL C41 N14 SING Y N 45 
KHL C16 C17 TRIP N N 46 
KHL C17 C18 SING N N 47 
KHL N14 C13 SING N N 48 
KHL O12 C13 SING N N 49 
KHL O12 C11 SING N N 50 
KHL C10 C11 SING N N 51 
KHL C13 C47 SING N N 52 
KHL C11 C48 SING N N 53 
KHL C47 C48 SING N N 54 
KHL C47 O50 SING N N 55 
KHL C48 O49 SING N N 56 
KHL C10 H1  SING N N 57 
KHL C10 H2  SING N N 58 
KHL C13 H3  SING N N 59 
KHL C20 H4  SING N N 60 
KHL C20 H5  SING N N 61 
KHL C21 H6  SING N N 62 
KHL C21 H7  SING N N 63 
KHL C22 H8  SING N N 64 
KHL C24 H9  SING N N 65 
KHL C26 H10 SING N N 66 
KHL C04 H11 SING N N 67 
KHL C04 H12 SING N N 68 
KHL C05 H13 SING N N 69 
KHL C05 H14 SING N N 70 
KHL C11 H15 SING N N 71 
KHL C18 H16 SING N N 72 
KHL C18 H17 SING N N 73 
KHL C25 H18 SING N N 74 
KHL C30 H19 SING N N 75 
KHL C35 H20 SING N N 76 
KHL C43 H21 SING N N 77 
KHL C47 H22 SING N N 78 
KHL C48 H23 SING N N 79 
KHL N03 H24 SING N N 80 
KHL N06 H25 SING N N 81 
KHL N09 H26 SING N N 82 
KHL N38 H28 SING N N 83 
KHL N38 H29 SING N N 84 
KHL N46 H30 SING N N 85 
KHL N46 H31 SING N N 86 
KHL O27 H32 SING N N 87 
KHL O28 H33 SING N N 88 
KHL O49 H34 SING N N 89 
KHL O50 H35 SING N N 90 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KHL InChI            InChI                1.06  "InChI=1S/C28H34N14O8/c29-22-16-24(36-9-34-22)41(11-38-16)26-20(46)19(45)13(50-26)7-40-5-1-2-14-39-17-23(30)35-10-37-25(17)42(14)27-21(47)18(44)12(49-27)6-33-28(48)32-4-3-31-15(43)8-40/h9-13,18-21,26-27,44-47H,3-8H2,(H,31,43)(H2,29,34,36)(H2,30,35,37)(H2,32,33,48)/t12-,13-,18-,19-,20-,21-,26-,27-/m1/s1" 
KHL InChIKey         InChI                1.06  SLVFONSSAAMYJB-GMIOVBLFSA-N                                                                                                                                                                                                                                                                                      
KHL SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CN4CC#Cc5nc6c(N)ncnc6n5[C@@H]7O[C@H](CNC(=O)NCCNC(=O)C4)[C@@H](O)[C@H]7O)[C@@H](O)[C@H]3O"                                                                                                                                                                                        
KHL SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CN4CC#Cc5nc6c(N)ncnc6n5[CH]7O[CH](CNC(=O)NCCNC(=O)C4)[CH](O)[CH]7O)[CH](O)[CH]3O"                                                                                                                                                                                                    
KHL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN4CC#Cc5nc6c(ncnc6n5[C@H]7[C@@H]([C@@H]([C@H](O7)CNC(=O)NCCNC(=O)C4)O)O)N)O)O)N"                                                                                                                                                                                
KHL SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN4CC#Cc5nc6c(ncnc6n5C7C(C(C(O7)CNC(=O)NCCNC(=O)C4)O)O)N)O)O)N"                                                                                                                                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           KHL 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(1~{R},24~{R},25~{S},26~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-25,26-bis(oxidanyl)-27-oxa-2,4,6,9,14,17,20,22-octazatetracyclo[22.2.1.0^{2,10}.0^{3,8}]heptacosa-3(8),4,6,9-tetraen-11-yne-16,21-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KHL "Create component"  2022-05-25 PDBE 
KHL "Modify descriptor" 2022-08-22 RCSB 
KHL "Initial release"   2023-01-11 RCSB 
# 
