data_K1L
# 
_chem_comp.id                                    K1L 
_chem_comp.name                                  "9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{S})-8-(6-aminopurin-9-yl)-9-fluoranyl-3,12,18-tris(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-17-yl]-3~{H}-purin-6-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H24 F N9 O11 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-16 
_chem_comp.pdbx_modified_date                    2023-11-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        659.415 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     K1L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZVK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
K1L N1   N1  N 0 1 Y N N N N N 9.065  29.128 17.034 -8.972 0.041  -2.152 N1   K1L 1  
K1L C2   C1  C 0 1 Y N N N N N 9.334  27.857 17.347 -8.757 -0.886 -1.237 C2   K1L 2  
K1L C4   C2  C 0 1 Y N N N N N 7.391  27.094 16.621 -6.803 0.103  -0.540 C4   K1L 3  
K1L C5   C3  C 0 1 Y N N N N N 6.968  28.358 16.243 -6.986 1.114  -1.500 C5   K1L 4  
K1L C6   C4  C 0 1 Y N N N N N 7.870  29.413 16.472 -8.124 1.051  -2.321 C6   K1L 5  
K1L C12  C5  C 0 1 N N N N N N 0.108  32.330 18.440 9.320  0.479  0.062  C12  K1L 6  
K1L C14  C6  C 0 1 Y N N N N N 0.879  30.262 19.135 7.048  0.067  -0.419 C14  K1L 7  
K1L C15  C7  C 0 1 Y N N N N N 2.085  30.827 19.436 7.398  -0.255 -1.727 C15  K1L 8  
K1L C16  C8  C 0 1 N N N N N N 2.243  32.208 19.206 8.814  -0.184 -2.095 C16  K1L 9  
K1L C22  C9  C 0 1 N N R N N N 6.076  24.393 17.964 -4.165 -1.497 0.619  C22  K1L 10 
K1L C24  C10 C 0 1 N N R N N N 4.325  23.600 16.680 -2.792 0.214  1.688  C24  K1L 11 
K1L C25  C11 C 0 1 N N N N N N 2.913  23.689 16.155 -2.133 1.446  1.061  C25  K1L 12 
K1L C34  C12 C 0 1 N N R N N N 0.197  25.513 19.120 2.615  -0.792 1.210  C34  K1L 13 
K1L C18  C13 C 0 1 Y N N N N N 2.235  28.746 19.918 5.252  -0.473 -1.564 C18  K1L 14 
K1L C21  C14 C 0 1 N N R N N N 6.322  24.802 16.512 -5.023 -0.361 1.199  C21  K1L 15 
K1L C23  C15 C 0 1 N N R N N N 4.562  24.292 17.998 -2.723 -0.966 0.709  C23  K1L 16 
K1L C31  C16 C 0 1 N N R N N N -0.118 27.939 19.272 4.872  0.153  0.850  C31  K1L 17 
K1L C32  C17 C 0 1 N N S N N N -0.278 27.421 17.850 3.847  1.254  0.563  C32  K1L 18 
K1L C33  C18 C 0 1 N N R N N N 0.629  26.214 17.859 2.452  0.631  0.671  C33  K1L 19 
K1L C35  C19 C 0 1 N N N N N N 1.135  24.430 19.597 1.862  -1.776 0.313  C35  K1L 20 
K1L C36  C20 C 0 1 N N N N N N 0.069  26.673 20.129 4.110  -1.126 1.206  C36  K1L 21 
K1L C8   C21 C 0 1 Y N N N N N 5.379  27.039 15.756 -5.143 1.551  -0.444 C8   K1L 22 
K1L F22  F1  F 0 1 N N N N N N 6.624  23.122 18.164 -4.308 -2.658 1.386  F22  K1L 23 
K1L N11  N2  N 0 1 N N N N N N 1.257  32.964 18.708 9.701  0.188  -1.151 N11  K1L 24 
K1L N13  N3  N 0 1 N N N N N N -0.149 30.991 18.628 8.035  0.432  0.456  N13  K1L 25 
K1L N17  N4  N 0 1 Y N N N N N 2.950  29.862 19.935 6.260  -0.577 -2.382 N17  K1L 26 
K1L N19  N5  N 0 1 Y N N N N N 0.964  28.934 19.437 5.697  -0.077 -0.338 N19  K1L 27 
K1L N3   N6  N 0 1 Y N N N N N 8.564  26.779 17.179 -7.706 -0.868 -0.445 N3   K1L 28 
K1L N6   N7  N 0 1 N N N N N N 7.571  30.676 16.148 -8.357 2.017  -3.283 N6   K1L 29 
K1L N7   N8  N 0 1 Y N N N N N 5.695  28.312 15.698 -5.938 1.965  -1.387 N7   K1L 30 
K1L N9   N9  N 0 1 Y N N N N N 6.361  26.247 16.303 -5.634 0.406  0.110  N9   K1L 31 
K1L O16  O1  O 0 1 N N N N N N 3.324  32.737 19.471 9.182  -0.455 -3.227 O16  K1L 32 
K1L O23  O2  O 0 1 N N N N N N 4.154  23.446 19.107 -1.851 -1.981 1.213  O23  K1L 33 
K1L O24  O3  O 0 1 N N N N N N 5.231  24.271 15.772 -4.163 0.481  1.962  O24  K1L 34 
K1L O25  O4  O 0 1 N N N N N N 2.652  25.032 15.704 -0.947 1.771  1.788  O25  K1L 35 
K1L O32  O5  O 0 1 N N N N N N -1.631 26.989 17.659 3.984  2.305  1.522  O32  K1L 36 
K1L O33  O6  O 0 1 N N N N N N 0.360  25.354 16.720 1.647  1.400  1.567  O33  K1L 37 
K1L O35  O7  O 0 1 N N N N N N 2.383  24.997 20.040 0.750  -2.318 1.029  O35  K1L 38 
K1L P25  P1  P 0 1 N N N N N N 1.174  25.499 15.361 0.401  2.294  1.078  P25  K1L 39 
K1L P35  P2  P 0 1 N N N N N N 3.601  24.070 20.463 -0.669 -2.634 0.337  P35  K1L 40 
K1L O25A O8  O 0 0 N N N N N N 0.593  24.579 14.326 0.635  3.709  1.446  O25A K1L 41 
K1L O25B O9  O 0 0 N N N N N N 1.193  26.938 14.944 0.247  2.174  -0.520 O25B K1L 42 
K1L O35A O10 O 0 0 N N N N N N 4.668  24.911 21.095 -0.691 -2.061 -1.027 O35A K1L 43 
K1L O35B O11 O 0 0 N N N N N N 3.099  22.975 21.356 -0.881 -4.228 0.253  O35B K1L 44 
K1L H1   H1  H 0 1 N N N N N N 10.301 27.678 17.794 -9.472 -1.689 -1.133 H1   K1L 45 
K1L H2   H2  H 0 1 N N N N N N -0.696 32.928 18.037 10.070 0.767  0.784  H2   K1L 46 
K1L H3   H3  H 0 1 N N N N N N 6.450  25.152 18.667 -4.436 -1.691 -0.419 H3   K1L 47 
K1L H4   H4  H 0 1 N N N N N N 4.607  22.541 16.775 -2.272 -0.045 2.613  H4   K1L 48 
K1L H5   H5  H 0 1 N N N N N N 2.207  23.428 16.957 -1.877 1.232  0.023  H5   K1L 49 
K1L H6   H6  H 0 1 N N N N N N 2.789  22.990 15.315 -2.825 2.287  1.099  H6   K1L 50 
K1L H7   H7  H 0 1 N N N N N N -0.800 25.076 18.962 2.229  -0.848 2.227  H7   K1L 51 
K1L H8   H8  H 0 1 N N N N N N 2.613  27.790 20.248 4.221  -0.670 -1.819 H8   K1L 52 
K1L H9   H9  H 0 1 N N N N N N 7.267  24.353 16.173 -5.801 -0.775 1.840  H9   K1L 53 
K1L H10  H10 H 0 1 N N N N N N 4.090  25.285 18.028 -2.382 -0.628 -0.270 H10  K1L 54 
K1L H11  H11 H 0 1 N N N N N N -1.068 28.406 19.570 5.505  0.449  1.687  H11  K1L 55 
K1L H12  H12 H 0 1 N N N N N N 0.044  28.167 17.109 4.000  1.647  -0.442 H12  K1L 56 
K1L H13  H13 H 0 1 N N N N N N 1.687  26.512 17.911 1.986  0.602  -0.313 H13  K1L 57 
K1L H14  H14 H 0 1 N N N N N N 0.667  23.889 20.433 1.504  -1.256 -0.576 H14  K1L 58 
K1L H15  H15 H 0 1 N N N N N N 1.329  23.731 18.771 2.532  -2.583 0.017  H15  K1L 59 
K1L H16  H16 H 0 1 N N N N N N -0.801 26.519 20.784 4.414  -1.475 2.193  H16  K1L 60 
K1L H17  H17 H 0 1 N N N N N N 0.979  26.753 20.741 4.314  -1.897 0.462  H17  K1L 61 
K1L H18  H18 H 0 1 N N N N N N 4.434  26.650 15.406 -4.229 2.043  -0.144 H18  K1L 62 
K1L H19  H19 H 0 1 N N N N N N -1.034 30.582 18.406 7.805  0.659  1.371  H19  K1L 63 
K1L H20  H20 H 0 1 N N N N N N 8.337  31.272 16.388 -7.731 2.749  -3.397 H20  K1L 64 
K1L H21  H21 H 0 1 N N N N N N 7.398  30.736 15.165 -9.146 1.963  -3.844 H21  K1L 65 
K1L H22  H22 H 0 1 N N N N N N -2.207 27.744 17.652 3.360  3.033  1.398  H22  K1L 66 
K1L H23  H23 H 0 1 N N N N N N 0.824  27.021 14.073 -0.485 2.689  -0.885 H23  K1L 67 
K1L H24  H24 H 0 1 N N N N N N 3.558  23.008 22.187 -0.204 -4.688 -0.261 H24  K1L 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
K1L O25A P25  DOUB N N 1  
K1L O25B P25  SING N N 2  
K1L P25  O25  SING N N 3  
K1L P25  O33  SING N N 4  
K1L N7   C8   DOUB Y N 5  
K1L N7   C5   SING Y N 6  
K1L O25  C25  SING N N 7  
K1L C8   N9   SING Y N 8  
K1L O24  C21  SING N N 9  
K1L O24  C24  SING N N 10 
K1L N6   C6   SING N N 11 
K1L C25  C24  SING N N 12 
K1L C5   C6   DOUB Y N 13 
K1L C5   C4   SING Y N 14 
K1L N9   C21  SING N N 15 
K1L N9   C4   SING Y N 16 
K1L C6   N1   SING Y N 17 
K1L C21  C22  SING N N 18 
K1L C4   N3   DOUB Y N 19 
K1L C24  C23  SING N N 20 
K1L O33  C33  SING N N 21 
K1L N1   C2   DOUB Y N 22 
K1L N3   C2   SING Y N 23 
K1L O32  C32  SING N N 24 
K1L C32  C33  SING N N 25 
K1L C32  C31  SING N N 26 
K1L C33  C34  SING N N 27 
K1L C22  C23  SING N N 28 
K1L C22  F22  SING N N 29 
K1L C23  O23  SING N N 30 
K1L C12  N13  SING N N 31 
K1L C12  N11  DOUB N N 32 
K1L N13  C14  SING N N 33 
K1L N11  C16  SING N N 34 
K1L O23  P35  SING N N 35 
K1L C34  C35  SING N N 36 
K1L C34  C36  SING N N 37 
K1L C14  C15  DOUB Y N 38 
K1L C14  N19  SING Y N 39 
K1L C16  C15  SING N N 40 
K1L C16  O16  DOUB N N 41 
K1L C31  N19  SING N N 42 
K1L C31  C36  SING N N 43 
K1L C15  N17  SING Y N 44 
K1L N19  C18  SING Y N 45 
K1L C35  O35  SING N N 46 
K1L C18  N17  DOUB Y N 47 
K1L O35  P35  SING N N 48 
K1L P35  O35A DOUB N N 49 
K1L P35  O35B SING N N 50 
K1L C2   H1   SING N N 51 
K1L C12  H2   SING N N 52 
K1L C22  H3   SING N N 53 
K1L C24  H4   SING N N 54 
K1L C25  H5   SING N N 55 
K1L C25  H6   SING N N 56 
K1L C34  H7   SING N N 57 
K1L C18  H8   SING N N 58 
K1L C21  H9   SING N N 59 
K1L C23  H10  SING N N 60 
K1L C31  H11  SING N N 61 
K1L C32  H12  SING N N 62 
K1L C33  H13  SING N N 63 
K1L C35  H14  SING N N 64 
K1L C35  H15  SING N N 65 
K1L C36  H16  SING N N 66 
K1L C36  H17  SING N N 67 
K1L C8   H18  SING N N 68 
K1L N13  H19  SING N N 69 
K1L N6   H20  SING N N 70 
K1L N6   H21  SING N N 71 
K1L O32  H22  SING N N 72 
K1L O25B H23  SING N N 73 
K1L O35B H24  SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
K1L InChI            InChI                1.06  "InChI=1S/C21H24FN9O11P2/c22-11-16-10(40-21(11)31-7-28-12-17(23)24-4-25-18(12)31)3-39-44(36,37)41-15-8(2-38-43(34,35)42-16)1-9(14(15)32)30-6-29-13-19(30)26-5-27-20(13)33/h4-11,14-16,21,32H,1-3H2,(H,34,35)(H,36,37)(H2,23,24,25)(H,26,27,33)/t8-,9-,10-,11-,14+,15-,16-,21-/m1/s1" 
K1L InChIKey         InChI                1.06  SOEFHQXFHXZBEJ-FAWVPDCCSA-N                                                                                                                                                                                                                                                          
K1L SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](O)[C@@H](C[C@@H]5CO[P](O)(=O)O[C@H]4[C@H]3F)n6cnc7C(=O)N=CNc67"                                                                                                                                                            
K1L SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](O)[CH](C[CH]5CO[P](O)(=O)O[CH]4[CH]3F)n6cnc7C(=O)N=CNc67"                                                                                                                                                                         
K1L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)COP(=O)(O[C@@H]5[C@H](C[C@H]([C@@H]5O)n6cnc7c6NC=NC7=O)COP(=O)(O4)O)O)F)N"                                                                                                                                                            
K1L SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(CC(C5O)n6cnc7c6NC=NC7=O)COP(=O)(O4)O)O)F)N"                                                                                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           K1L 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{S})-8-(6-aminopurin-9-yl)-9-fluoranyl-3,12,18-tris(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-17-yl]-3~{H}-purin-6-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
K1L "Create component"  2022-05-16 PDBE 
K1L "Modify descriptor" 2022-08-22 RCSB 
K1L "Initial release"   2023-11-29 RCSB 
# 
