data_JZL
# 
_chem_comp.id                                    JZL 
_chem_comp.name                                  "7-amino-2-[(2-chlorobenzyl)amino]-1-{[(1S,2S)-2-hydroxycycloheptyl]methyl}-1H-benzimidazole-5-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H28 Cl N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-09-29 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        441.954 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JZL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3JZI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JZL N1   N1   N  0 1 N N N -15.133 -2.086 -1.848 6.714  2.001  0.100  N1   JZL 1  
JZL C2   C2   C  0 1 N N N -15.276 -1.993 -0.497 5.527  2.498  0.502  C2   JZL 2  
JZL O3   O3   O  0 1 N N N -16.154 -2.587 0.113  5.485  3.539  1.129  O3   JZL 3  
JZL C4   C4   C  0 1 Y N N -14.324 -1.110 0.219  4.278  1.779  0.180  C4   JZL 4  
JZL C5   C5   C  0 1 Y N N -14.598 -0.859 1.581  4.329  0.581  -0.542 C5   JZL 5  
JZL C6   C6   C  0 1 Y N N -13.790 -0.011 2.363  3.164  -0.097 -0.847 C6   JZL 6  
JZL N7   N7   N  0 1 N N N -14.136 0.179  3.715  3.219  -1.294 -1.569 N7   JZL 7  
JZL C8   C8   C  0 1 Y N N -12.673 0.553  1.686  1.934  0.412  -0.433 C8   JZL 8  
JZL N9   N9   N  0 1 Y N N -11.690 1.396  2.071  0.626  -0.015 -0.576 N9   JZL 9  
JZL C10  C10  C  0 1 N N N -11.594 1.987  3.374  0.178  -1.228 -1.265 C10  JZL 10 
JZL C11  C11  C  0 1 N N S -10.716 1.316  4.372  -0.010 -2.353 -0.245 C11  JZL 11 
JZL C12  C12  C  0 1 N N N -10.612 1.832  5.802  1.327  -2.697 0.354  C12  JZL 12 
JZL C13  C13  C  0 1 N N N -10.632 0.687  6.786  1.117  -3.080 1.833  C13  JZL 13 
JZL C14  C14  C  0 1 N N N -11.411 -0.495 6.278  0.644  -4.447 1.991  C14  JZL 14 
JZL C15  C15  C  0 1 N N N -10.619 -1.479 5.419  -0.728 -4.675 1.324  C15  JZL 15 
JZL C16  C16  C  0 1 N N N -9.612  -0.961 4.369  -0.516 -4.868 -0.153 C16  JZL 16 
JZL C17  C17  C  0 1 N N S -9.555  0.488  3.884  -0.668 -3.557 -0.947 C17  JZL 17 
JZL O18  O18  O  0 1 N N N -8.306  1.137  4.219  -0.069 -3.724 -2.233 O18  JZL 18 
JZL C19  C19  C  0 1 Y N N -10.846 1.636  1.013  -0.172 0.904  0.045  C19  JZL 19 
JZL N20  N20  N  0 1 N N N -9.781  2.469  1.185  -1.546 0.834  0.124  N20  JZL 20 
JZL C21  C21  C  0 1 N N N -9.000  2.953  0.102  -2.294 1.885  0.820  C21  JZL 21 
JZL C22  C22  C  0 1 Y N N -9.643  4.103  -0.616 -3.768 1.575  0.763  C22  JZL 22 
JZL C23  C23  C  0 1 Y N N -10.453 5.078  0.058  -4.417 1.098  1.885  C23  JZL 23 
JZL C24  C24  C  0 1 Y N N -11.030 6.141  -0.671 -5.769 0.813  1.833  C24  JZL 24 
JZL C25  C25  C  0 1 Y N N -10.807 6.261  -2.060 -6.472 1.005  0.658  C25  JZL 25 
JZL C26  C26  C  0 1 Y N N -10.009 5.302  -2.734 -5.823 1.481  -0.465 C26  JZL 26 
JZL C27  C27  C  0 1 Y N N -9.426  4.229  -2.010 -4.472 1.773  -0.412 C27  JZL 27 
JZL CL28 CL28 CL 0 0 N N N -8.458  3.075  -2.871 -3.658 2.379  -1.820 CL28 JZL 28 
JZL N29  N29  N  0 1 Y N N -11.241 0.959  -0.037 0.564  1.860  0.554  N29  JZL 29 
JZL C30  C30  C  0 1 Y N N -12.364 0.305  0.350  1.876  1.614  0.292  C30  JZL 30 
JZL C31  C31  C  0 1 Y N N -13.185 -0.544 -0.402 3.055  2.292  0.602  C31  JZL 31 
JZL HN1  HN1  H  0 1 N N N -15.760 -2.656 -2.379 7.534  2.473  0.311  HN1  JZL 32 
JZL HN1A HN1A H  0 0 N N N -14.401 -1.584 -2.309 6.747  1.169  -0.398 HN1A JZL 33 
JZL H5   H5   H  0 1 N N N -15.455 -1.332 2.038  5.282  0.185  -0.863 H5   JZL 34 
JZL HN7  HN7  H  0 1 N N N -13.480 0.800  4.143  4.047  -1.565 -1.997 HN7  JZL 35 
JZL HN7A HN7A H  0 0 N N N -15.053 0.573  3.772  2.429  -1.853 -1.643 HN7A JZL 36 
JZL H10  H10  H  0 1 N N N -11.199 3.004  3.235  -0.768 -1.032 -1.768 H10  JZL 37 
JZL H10A H10A H  0 0 N N N -12.610 1.994  3.797  0.927  -1.525 -1.999 H10A JZL 38 
JZL H11  H11  H  0 1 N N N -11.498 0.562  4.547  -0.672 -2.004 0.547  H11  JZL 39 
JZL H12  H12  H  0 1 N N N -9.669  2.387  5.916  1.764  -3.539 -0.184 H12  JZL 40 
JZL H12A H12A H  0 0 N N N -11.464 2.497  6.007  1.990  -1.834 0.289  H12A JZL 41 
JZL H13  H13  H  0 1 N N N -9.596  0.368  6.971  2.063  -2.970 2.363  H13  JZL 42 
JZL H13A H13A H  0 0 N N N -11.098 1.037  7.719  0.387  -2.401 2.273  H13A JZL 43 
JZL H14  H14  H  0 1 N N N -11.787 -1.046 7.153  1.371  -5.126 1.543  H14  JZL 44 
JZL H14A H14A H  0 0 N N N -12.238 -0.109 5.664  0.562  -4.672 3.054  H14A JZL 45 
JZL H15  H15  H  0 1 N N N -10.036 -2.094 6.121  -1.197 -5.564 1.746  H15  JZL 46 
JZL H15A H15A H  0 0 N N N -11.365 -2.064 4.861  -1.365 -3.807 1.492  H15A JZL 47 
JZL H16  H16  H  0 1 N N N -8.622  -1.152 4.808  0.486  -5.265 -0.317 H16  JZL 48 
JZL H16A H16A H  0 0 N N N -9.815  -1.554 3.465  -1.244 -5.590 -0.522 H16A JZL 49 
JZL H17  H17  H  0 1 N N N -9.625  0.425  2.788  -1.730 -3.348 -1.081 H17  JZL 50 
JZL HO18 HO18 H  0 0 N N N -7.581  0.608  3.908  -0.429 -4.464 -2.741 HO18 JZL 51 
JZL HN20 HN20 H  0 0 N N N -10.154 3.285  1.626  -2.019 0.090  -0.281 HN20 JZL 52 
JZL H21  H21  H  0 1 N N N -8.031  3.291  0.498  -1.972 1.931  1.860  H21  JZL 53 
JZL H21A H21A H  0 0 N N N -8.859  2.132  -0.617 -2.106 2.844  0.338  H21A JZL 54 
JZL H23  H23  H  0 1 N N N -10.621 4.999  1.122  -3.869 0.947  2.803  H23  JZL 55 
JZL H24  H24  H  0 1 N N N -11.646 6.867  -0.162 -6.277 0.440  2.711  H24  JZL 56 
JZL H25  H25  H  0 1 N N N -11.244 7.082  -2.609 -7.528 0.782  0.618  H25  JZL 57 
JZL H26  H26  H  0 1 N N N -9.845  5.388  -3.798 -6.372 1.630  -1.383 H26  JZL 58 
JZL H31  H31  H  0 1 N N N -12.954 -0.762 -1.434 3.018  3.214  1.163  H31  JZL 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JZL N1  C2   SING N N 1  
JZL C2  O3   DOUB N N 2  
JZL C2  C4   SING N N 3  
JZL C4  C5   DOUB Y N 4  
JZL C4  C31  SING Y N 5  
JZL C5  C6   SING Y N 6  
JZL C6  N7   SING N N 7  
JZL C6  C8   DOUB Y N 8  
JZL C8  N9   SING Y N 9  
JZL C8  C30  SING Y N 10 
JZL N9  C10  SING N N 11 
JZL N9  C19  SING Y N 12 
JZL C10 C11  SING N N 13 
JZL C11 C12  SING N N 14 
JZL C11 C17  SING N N 15 
JZL C12 C13  SING N N 16 
JZL C13 C14  SING N N 17 
JZL C14 C15  SING N N 18 
JZL C15 C16  SING N N 19 
JZL C16 C17  SING N N 20 
JZL C17 O18  SING N N 21 
JZL C19 N20  SING N N 22 
JZL C19 N29  DOUB Y N 23 
JZL N20 C21  SING N N 24 
JZL C21 C22  SING N N 25 
JZL C22 C23  DOUB Y N 26 
JZL C22 C27  SING Y N 27 
JZL C23 C24  SING Y N 28 
JZL C24 C25  DOUB Y N 29 
JZL C25 C26  SING Y N 30 
JZL C26 C27  DOUB Y N 31 
JZL C27 CL28 SING N N 32 
JZL N29 C30  SING Y N 33 
JZL C30 C31  DOUB Y N 34 
JZL N1  HN1  SING N N 35 
JZL N1  HN1A SING N N 36 
JZL C5  H5   SING N N 37 
JZL N7  HN7  SING N N 38 
JZL N7  HN7A SING N N 39 
JZL C10 H10  SING N N 40 
JZL C10 H10A SING N N 41 
JZL C11 H11  SING N N 42 
JZL C12 H12  SING N N 43 
JZL C12 H12A SING N N 44 
JZL C13 H13  SING N N 45 
JZL C13 H13A SING N N 46 
JZL C14 H14  SING N N 47 
JZL C14 H14A SING N N 48 
JZL C15 H15  SING N N 49 
JZL C15 H15A SING N N 50 
JZL C16 H16  SING N N 51 
JZL C16 H16A SING N N 52 
JZL C17 H17  SING N N 53 
JZL O18 HO18 SING N N 54 
JZL N20 HN20 SING N N 55 
JZL C21 H21  SING N N 56 
JZL C21 H21A SING N N 57 
JZL C23 H23  SING N N 58 
JZL C24 H24  SING N N 59 
JZL C25 H25  SING N N 60 
JZL C26 H26  SING N N 61 
JZL C31 H31  SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JZL SMILES           ACDLabs              11.02 "Clc1ccccc1CNc3nc2cc(cc(c2n3CC4CCCCCC4O)N)C(=O)N"                                                                                                                                                     
JZL SMILES_CANONICAL CACTVS               3.352 "NC(=O)c1cc(N)c2n(C[C@@H]3CCCCC[C@@H]3O)c(NCc4ccccc4Cl)nc2c1"                                                                                                                                         
JZL SMILES           CACTVS               3.352 "NC(=O)c1cc(N)c2n(C[CH]3CCCCC[CH]3O)c(NCc4ccccc4Cl)nc2c1"                                                                                                                                             
JZL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc(c(c1)CNc2nc3cc(cc(c3n2C[C@@H]4CCCCC[C@@H]4O)N)C(=O)N)Cl"                                                                                                                                       
JZL SMILES           "OpenEye OEToolkits" 1.7.0 "c1ccc(c(c1)CNc2nc3cc(cc(c3n2CC4CCCCCC4O)N)C(=O)N)Cl"                                                                                                                                                 
JZL InChI            InChI                1.03  "InChI=1S/C23H28ClN5O2/c24-17-8-5-4-6-14(17)12-27-23-28-19-11-16(22(26)31)10-18(25)21(19)29(23)13-15-7-2-1-3-9-20(15)30/h4-6,8,10-11,15,20,30H,1-3,7,9,12-13,25H2,(H2,26,31)(H,27,28)/t15-,20-/m0/s1" 
JZL InChIKey         InChI                1.03  AQAQDMCJHAROPH-YWZLYKJASA-N                                                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JZL "SYSTEMATIC NAME" ACDLabs              11.02 "7-amino-2-[(2-chlorobenzyl)amino]-1-{[(1S,2S)-2-hydroxycycloheptyl]methyl}-1H-benzimidazole-5-carboxamide"    
JZL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "7-azanyl-2-[(2-chlorophenyl)methylamino]-1-[[(1S,2S)-2-hydroxycycloheptyl]methyl]benzimidazole-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JZL "Create component"     2009-09-29 RCSB 
JZL "Modify aromatic_flag" 2011-06-04 RCSB 
JZL "Modify descriptor"    2011-06-04 RCSB 
# 
