data_J3L
#

_chem_comp.id                                   J3L
_chem_comp.name                                 "(2S)-3-methyl-2-[[(2S,4R)-1-methyl-4-[(2E,4E)-octa-2,4-dienoyl]-3,5-bis(oxidanylidene)pyrrolidin-2-yl]methyl]-2-oxidanyl-butanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H27 N O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-31
_chem_comp.pdbx_modified_date                   2021-06-25
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       365.421
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    J3L
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7EGV
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J3L  C13  C1   C  0  1  N  N  N  35.068  -20.899  37.011    2.158   3.159   1.280  C13  J3L   1  
J3L  C14  C2   C  0  1  N  N  S  32.790  -21.733  35.856    2.056   1.078  -0.257  C14  J3L   2  
J3L  C15  C3   C  0  1  N  N  N  32.167  -21.529  37.251    2.619   0.116   0.792  C15  J3L   3  
J3L  C16  C4   C  0  1  N  N  S  31.395  -22.634  38.073    3.525  -0.910   0.109  C16  J3L   4  
J3L  C24  C5   C  0  1  N  N  N  32.323  -20.863  34.873    0.980   0.385  -1.064  C24  J3L   5  
J3L  O22  O1   O  0  1  N  N  N  30.536  -24.847  37.870    5.382   0.698  -0.134  O22  J3L   6  
J3L  C01  C6   C  0  1  N  N  N  35.280  -13.929  32.960   -9.655  -1.160  -0.400  C01  J3L   7  
J3L  C02  C7   C  0  1  N  N  N  34.380  -13.600  31.747   -8.176  -1.483  -0.181  C02  J3L   8  
J3L  C03  C8   C  0  1  N  N  N  34.610  -14.601  30.557   -7.458  -0.244   0.360  C03  J3L   9  
J3L  C04  C9   C  0  1  N  N  N  33.917  -15.944  30.901   -6.001  -0.562   0.576  C04  J3L  10  
J3L  C05  C10  C  0  1  N  N  N  34.088  -17.045  30.137   -5.061   0.193   0.001  C05  J3L  11  
J3L  C06  C11  C  0  1  N  N  N  33.325  -18.298  30.614   -3.648  -0.115   0.210  C06  J3L  12  
J3L  C07  C12  C  0  1  N  N  N  33.489  -18.689  31.879   -2.692   0.651  -0.374  C07  J3L  13  
J3L  C08  C13  C  0  1  N  N  N  32.730  -19.919  32.430   -1.331   0.354  -0.172  C08  J3L  14  
J3L  C09  C14  C  0  1  N  N  R  33.171  -20.619  33.780   -0.270   1.205  -0.822  C09  J3L  15  
J3L  C10  C15  C  0  1  N  N  N  34.488  -20.518  34.477    0.137   2.323   0.105  C10  J3L  16  
J3L  C18  C16  C  0  1  N  N  N  32.070  -22.746  39.471    4.216  -1.767   1.172  C18  J3L  17  
J3L  C19  C17  C  0  1  N  N  N  31.494  -23.768  40.517    3.161  -2.493   2.007  C19  J3L  18  
J3L  C20  C18  C  0  1  N  N  N  33.586  -22.904  39.269    5.122  -2.793   0.489  C20  J3L  19  
J3L  C21  C19  C  0  1  N  N  N  31.407  -24.011  37.494    4.564  -0.194  -0.714  C21  J3L  20  
J3L  N12  N1   N  0  1  N  N  N  34.311  -21.309  35.831    1.442   2.228   0.403  N12  J3L  21  
J3L  O11  O2   O  0  1  N  N  N  35.668  -19.822  34.085   -0.608   3.185   0.520  O11  J3L  22  
J3L  O17  O3   O  0  1  N  N  N  30.058  -22.248  38.262    2.739  -1.748  -0.741  O17  J3L  23  
J3L  O23  O4   O  0  1  N  N  N  32.285  -24.341  36.660    4.661  -0.423  -1.897  O23  J3L  24  
J3L  O25  O5   O  0  1  N  N  N  31.276  -20.307  34.952    1.093  -0.603  -1.749  O25  J3L  25  
J3L  O26  O6   O  0  1  N  N  N  31.804  -20.330  31.818   -1.011  -0.588   0.525  O26  J3L  26  
J3L  H1   H1   H  0  1  N  N  N  34.819  -21.559  37.855    1.495   3.978   1.558  H1   J3L  27  
J3L  H2   H2   H  0  1  N  N  N  36.145  -20.967  36.798    2.484   2.634   2.177  H2   J3L  28  
J3L  H3   H3   H  0  1  N  N  N  34.811  -19.861  37.269    3.026   3.557   0.755  H3   J3L  29  
J3L  H4   H4   H  0  1  N  N  N  32.699  -22.787  35.555    2.856   1.413  -0.918  H4   J3L  30  
J3L  H5   H5   H  0  1  N  N  N  32.997  -21.210  37.898    3.196   0.678   1.527  H5   J3L  31  
J3L  H6   H6   H  0  1  N  N  N  31.454  -20.700  37.134    1.798  -0.398   1.290  H6   J3L  32  
J3L  H7   H7   H  0  1  N  N  N  30.682  -25.677  37.431    5.981   1.187  -0.715  H7   J3L  33  
J3L  H8   H8   H  0  1  N  N  N  35.087  -13.207  33.767  -10.106  -0.863   0.546  H8   J3L  34  
J3L  H9   H9   H  0  1  N  N  N  35.057  -14.945  33.317   -9.747  -0.345  -1.118  H9   J3L  35  
J3L  H10  H10  H  0  1  N  N  N  36.336  -13.870  32.659  -10.166  -2.042  -0.785  H10  J3L  36  
J3L  H11  H11  H  0  1  N  N  N  34.606  -12.580  31.403   -8.084  -2.298   0.537  H11  J3L  37  
J3L  H12  H12  H  0  1  N  N  N  33.327  -13.656  32.060   -7.724  -1.780  -1.128  H12  J3L  38  
J3L  H13  H13  H  0  1  N  N  N  35.688  -14.766  30.414   -7.550   0.571  -0.358  H13  J3L  39  
J3L  H14  H14  H  0  1  N  N  N  34.177  -14.186  29.635   -7.910   0.053   1.306  H14  J3L  40  
J3L  H15  H15  H  0  1  N  N  N  33.282  -16.001  31.773   -5.717  -1.399   1.196  H15  J3L  41  
J3L  H16  H16  H  0  1  N  N  N  34.713  -17.048  29.256   -5.345   1.030  -0.619  H16  J3L  42  
J3L  H17  H17  H  0  1  N  N  N  32.677  -18.843  29.943   -3.364  -0.953   0.830  H17  J3L  43  
J3L  H18  H18  H  0  1  N  N  N  34.159  -18.141  32.525   -2.976   1.489  -0.994  H18  J3L  44  
J3L  H19  H19  H  0  1  N  N  N  33.265  -21.646  33.399   -0.641   1.613  -1.762  H19  J3L  45  
J3L  H20  H20  H  0  1  N  N  N  31.939  -21.757  39.935    4.816  -1.127   1.820  H20  J3L  46  
J3L  H21  H21  H  0  1  N  N  N  32.085  -23.718  41.443    3.654  -3.103   2.764  H21  J3L  47  
J3L  H22  H22  H  0  1  N  N  N  30.446  -23.516  40.737    2.516  -1.762   2.494  H22  J3L  48  
J3L  H23  H23  H  0  1  N  N  N  31.548  -24.786  40.103    2.562  -3.133   1.359  H23  J3L  49  
J3L  H24  H24  H  0  1  N  N  N  34.080  -22.985  40.248    5.874  -2.276  -0.107  H24  J3L  50  
J3L  H25  H25  H  0  1  N  N  N  33.785  -23.813  38.682    5.615  -3.403   1.246  H25  J3L  51  
J3L  H26  H26  H  0  1  N  N  N  33.978  -22.028  38.732    4.523  -3.433  -0.159  H26  J3L  52  
J3L  H27  H27  H  0  1  N  N  N  29.601  -22.918  38.757    2.048  -2.241  -0.277  H27  J3L  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J3L  C05  C06  SING  N  N   1  
J3L  C05  C04  DOUB  N  E   2  
J3L  C03  C04  SING  N  N   3  
J3L  C03  C02  SING  N  N   4  
J3L  C06  C07  DOUB  N  E   5  
J3L  C02  C01  SING  N  N   6  
J3L  O26  C08  DOUB  N  N   7  
J3L  C07  C08  SING  N  N   8  
J3L  C08  C09  SING  N  N   9  
J3L  C09  C10  SING  N  N  10  
J3L  C09  C24  SING  N  N  11  
J3L  O11  C10  DOUB  N  N  12  
J3L  C10  N12  SING  N  N  13  
J3L  C24  O25  DOUB  N  N  14  
J3L  C24  C14  SING  N  N  15  
J3L  N12  C14  SING  N  N  16  
J3L  N12  C13  SING  N  N  17  
J3L  C14  C15  SING  N  N  18  
J3L  O23  C21  DOUB  N  N  19  
J3L  C15  C16  SING  N  N  20  
J3L  C21  O22  SING  N  N  21  
J3L  C21  C16  SING  N  N  22  
J3L  C16  O17  SING  N  N  23  
J3L  C16  C18  SING  N  N  24  
J3L  C20  C18  SING  N  N  25  
J3L  C18  C19  SING  N  N  26  
J3L  C13  H1   SING  N  N  27  
J3L  C13  H2   SING  N  N  28  
J3L  C13  H3   SING  N  N  29  
J3L  C14  H4   SING  N  N  30  
J3L  C15  H5   SING  N  N  31  
J3L  C15  H6   SING  N  N  32  
J3L  O22  H7   SING  N  N  33  
J3L  C01  H8   SING  N  N  34  
J3L  C01  H9   SING  N  N  35  
J3L  C01  H10  SING  N  N  36  
J3L  C02  H11  SING  N  N  37  
J3L  C02  H12  SING  N  N  38  
J3L  C03  H13  SING  N  N  39  
J3L  C03  H14  SING  N  N  40  
J3L  C04  H15  SING  N  N  41  
J3L  C05  H16  SING  N  N  42  
J3L  C06  H17  SING  N  N  43  
J3L  C07  H18  SING  N  N  44  
J3L  C09  H19  SING  N  N  45  
J3L  C18  H20  SING  N  N  46  
J3L  C19  H21  SING  N  N  47  
J3L  C19  H22  SING  N  N  48  
J3L  C19  H23  SING  N  N  49  
J3L  C20  H24  SING  N  N  50  
J3L  C20  H25  SING  N  N  51  
J3L  C20  H26  SING  N  N  52  
J3L  O17  H27  SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J3L  InChI             InChI                 1.03   "InChI=1S/C19H27NO6/c1-5-6-7-8-9-10-14(21)15-16(22)13(20(4)17(15)23)11-19(26,12(2)3)18(24)25/h7-10,12-13,15,26H,5-6,11H2,1-4H3,(H,24,25)/b8-7+,10-9+/t13-,15+,19-/m0/s1"  
J3L  InChIKey          InChI                 1.03   QTGRXFMVJJTPSQ-IGSUIHLESA-N  
J3L  SMILES_CANONICAL  CACTVS                3.385  "CCC/C=C/C=C/C(=O)[C@@H]1C(=O)[C@H](C[C@](O)(C(C)C)C(O)=O)N(C)C1=O"  
J3L  SMILES            CACTVS                3.385  "CCCC=CC=CC(=O)[CH]1C(=O)[CH](C[C](O)(C(C)C)C(O)=O)N(C)C1=O"  
J3L  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCC/C=C/C=C/C(=O)[C@@H]1C(=O)[C@@H](N(C1=O)C)C[C@](C(C)C)(C(=O)O)O"  
J3L  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCC=CC=CC(=O)C1C(=O)C(N(C1=O)C)CC(C(C)C)(C(=O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          J3L
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-3-methyl-2-[[(2~{S},4~{R})-1-methyl-4-[(2~{E},4~{E})-octa-2,4-dienoyl]-3,5-bis(oxidanylidene)pyrrolidin-2-yl]methyl]-2-oxidanyl-butanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J3L  "Create component"  2021-03-31  PDBJ  
J3L  "Initial release"   2021-06-30  RCSB  
##
